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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960073
Clone id TST39A01NGRL0006_G16
Library
Length 489
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_G16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GGAAGAGTTTAAAGCCAAGTCAATGCTTTGGAAGAAATCATGCATGCAGGAAGGAAAAAG
AATGCTTGAAGGAGCTCCTGCCAAAGAGGTGAAATCACTAGAGAGAGAGAATACCCAACA
CAGGTCTTTTCTAGAGAGAGGAGATGGGCTGACGCATTACCAAAGCAGGACATGGCCTCT
GCATCTAGACATGACCCATCTTTAACATCAAGAAATAAAACTCCTCGACTCGCTTGTTGC
TACTTGACAACCTCAATGAAAACTCGGTTCTCAGCTAATGCTCGAGGAATCTCTTCCTTC
AAGCAGAAAAGCAAAGGTTACATACAATAATGTCTGAGACAGGCCTACAGACAAATAAGC
TCGTTTGAAATTTTTGTCAACATCAAGCTATTCCTATTCTTGACTATTAAACCCCATTAT
TGATTCTCTAATTCATTGCCTTTAAGGGTTTAGGGTTAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O88573
Definition sp|O88573|AFF1_MOUSE AF4/FMR2 family member 1 OS=Mus musculus
Align length 95
Score (bit) 31.2
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960073|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_G16, 5'
         (457 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O88573|AFF1_MOUSE AF4/FMR2 family member 1 OS=Mus musculus GN...    31   2.3  
sp|P40146|ADCY8_RAT Adenylate cyclase type 8 OS=Rattus norvegicu...    30   6.6  
sp|P97490|ADCY8_MOUSE Adenylate cyclase type 8 OS=Mus musculus G...    30   6.6  
sp|P40145|ADCY8_HUMAN Adenylate cyclase type 8 OS=Homo sapiens G...    30   6.6  

>sp|O88573|AFF1_MOUSE AF4/FMR2 family member 1 OS=Mus musculus GN=Aff1
            PE=2 SV=1
          Length = 1217

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 26/95 (27%), Positives = 44/95 (46%)
 Frame = +1

Query: 25   ALEEIMHAGRKKNA*RSSCQRGEITREREYPTQVFSRERRWADALPKQDMASASRHDPSL 204
            A ++ + AG+K+++   SC       ++   TQ  S   R  + + ++  +S+S H  S 
Sbjct: 791  AEDKQLSAGKKQDSETKSCDSSSRVTKKRRVTQKKSTVTRDTNWISRKTASSSSSHTES- 849

Query: 205  TSRNKTPRLACCYLTTSMKTRFSANARGISSFKQK 309
             SR K PR +       M    SA++   SS  QK
Sbjct: 850  -SRTKAPRSSSENSRKEMLPPASASSVSSSSSSQK 883


>sp|P40146|ADCY8_RAT Adenylate cyclase type 8 OS=Rattus norvegicus
           GN=Adcy8 PE=2 SV=1
          Length = 1248

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -1

Query: 367 QTSLFVCRPVSDIIVCNLCFSA*RKRFLEH*LRTEFSLRLSSSNKRVEEFYFLML 203
           Q  LF+C   + I +  L   A R+ FLE     E  LRL + N+R E     +L
Sbjct: 321 QVVLFMCMNTAGIFISYLSDRAQRQAFLETRRCVEARLRLETENQRQERLVLSVL 375


>sp|P97490|ADCY8_MOUSE Adenylate cyclase type 8 OS=Mus musculus
           GN=Adcy8 PE=2 SV=1
          Length = 1249

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -1

Query: 367 QTSLFVCRPVSDIIVCNLCFSA*RKRFLEH*LRTEFSLRLSSSNKRVEEFYFLML 203
           Q  LF+C   + I +  L   A R+ FLE     E  LRL + N+R E     +L
Sbjct: 322 QVVLFMCMNTAGIFISYLSDRAQRQAFLETRRCVEARLRLETENQRQERLVLSVL 376


>sp|P40145|ADCY8_HUMAN Adenylate cyclase type 8 OS=Homo sapiens
           GN=ADCY8 PE=1 SV=1
          Length = 1251

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -1

Query: 367 QTSLFVCRPVSDIIVCNLCFSA*RKRFLEH*LRTEFSLRLSSSNKRVEEFYFLML 203
           Q  LF+C   + I +  L   A R+ FLE     E  LRL + N+R E     +L
Sbjct: 324 QAVLFMCMNTAGIFISYLSDRAQRQAFLETRRCVEARLRLETENQRQERLVLSVL 378
tr_hit_id B3M4Q5
Definition tr|B3M4Q5|B3M4Q5_DROAN GF25314 OS=Drosophila ananassae
Align length 86
Score (bit) 36.2
E-value 0.84
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960073|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_G16, 5'
         (457 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3M4Q5|B3M4Q5_DROAN GF25314 OS=Drosophila ananassae GN=GF2531...    36   0.84 

>tr|B3M4Q5|B3M4Q5_DROAN GF25314 OS=Drosophila ananassae GN=GF25314
           PE=4 SV=1
          Length = 336

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 15/86 (17%)
 Frame = -3

Query: 230 SRGVLFLDVKDGSCLDAEAMSCFGNASAHLLSLEKT---------CVGY----SLSLV-- 96
           S+   + DV+ GSC++   + C  ++  ++ S  KT         C GY    +L +V  
Sbjct: 184 SKNRKYFDVESGSCVEPNKIDCASHSKLNVCSASKTAVYKSDGATCRGYFLCKALEIVAD 243

Query: 95  ISPLWQELLQAFFFLPACMISSKALT 18
           + P+W +  + +FF     +  KA T
Sbjct: 244 LDPIWMQCPEGYFFDEDLQVCGKANT 269