DK960089 |
Clone id |
TST39A01NGRL0006_H10 |
Library |
TST39 |
Length |
633 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_H10. 5' end sequence. |
Accession |
DK960089 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL2913Contig1 |
Sequence |
TCCGGAAGAATTTTGCATTTATTCAGTATGAGACGCAAGAAGAGGCAACAAAAGCTTTGG AAGCCACGAATATGAGCAAAATATTGGATAGAGTCATAACAGTTGAATATGCAACCCGTG AAGATGGGGACCGGGATCGTGGCAGTGTCAGTCCAGGGCGTGGAAGAGGAAGACGTGAGA GCCCTGACTATGGACGAGGAAGAAGTCCTGCTTTCAGGCGATCAAGCCGATCACCACCTC GTCGATATCGCAGTCAATCTCCCGATTATGGACCTTATGGAGGCCAACGCTAGAGAGGAG ATACTTATCATCTAAGTAATGTGTATAATGCATGTAGGTGAAGCTCTTCACACTGTTCAG CTGACGCAATTGATCATGCGTGAGAATCAGGAATTGTTTGTGTCAAGACATTGGAGTAAA AGTGTCATCGTGTGCTACTTTTGAGAGGTCTCAAGTATTGAAAGTCGTAAAAAGTACCTT CTAGAAGGCATTTATCCTGTCAAGCTTATAGATGTTCATAAAAAAAATGCCCACAAAAGC AGGGAGTGTGGCATTTTTTTGAAGTAAATGCTACATTTCTTGCCAGCGAAGGACTTAAAG GAGCTTTTACTNAAAAACAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P92964 |
Definition |
sp|P92964|RSP31_ARATH Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis thaliana |
Align length |
40 |
Score (bit) |
63.5 |
E-value |
8.0e-10 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9T025 |
Definition |
tr|A9T025|A9T025_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
40 |
Score (bit) |
72.8 |
E-value |
1.0e-11 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960089|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0006_H10, 5' (612 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9T025|A9T025_PHYPA Predicted protein OS=Physcomitrella paten... 73 1e-11 tr|B7FJ95|B7FJ95_MEDTR Putative uncharacterized protein (Fragmen... 70 7e-11 tr|B7FHI0|B7FHI0_MEDTR Putative uncharacterized protein OS=Medic... 70 7e-11 tr|Q6R4Q7|Q6R4Q7_VITRI Splicing factor-like protein OS=Vitis rip... 69 2e-10 tr|A5AVS4|A5AVS4_VITVI Putative uncharacterized protein OS=Vitis... 69 2e-10 tr|A7QWH6|A7QWH6_VITVI Chromosome undetermined scaffold_203, who... 69 3e-10 tr|Q0KIM7|Q0KIM7_SOLDE Arginine/serine-rich splicing factor RSP4... 68 5e-10 tr|A9NRJ0|A9NRJ0_PICSI Putative uncharacterized protein OS=Picea... 67 1e-09 tr|A7PY01|A7PY01_VITVI Chromosome chr15 scaffold_37, whole genom... 67 1e-09 tr|Q7XTJ6|Q7XTJ6_ORYSJ Os04g0118900 protein OS=Oryza sativa subs... 65 2e-09 tr|Q01MR9|Q01MR9_ORYSA H0716A07.4 protein OS=Oryza sativa GN=H07... 65 2e-09 tr|B8AUJ5|B8AUJ5_ORYSI Putative uncharacterized protein OS=Oryza... 65 2e-09 tr|A9NTP2|A9NTP2_PICSI Putative uncharacterized protein OS=Picea... 64 5e-09 tr|B8LPT2|B8LPT2_PICSI Putative uncharacterized protein OS=Picea... 64 7e-09 tr|Q3E8C5|Q3E8C5_ARATH Uncharacterized protein At5g52040.2 OS=Ar... 63 2e-08 tr|B7FHT4|B7FHT4_MEDTR Putative uncharacterized protein OS=Medic... 62 3e-08 tr|Q6Z725|Q6Z725_ORYSJ Os02g0122800 protein OS=Oryza sativa subs... 62 3e-08 tr|B8AGX7|B8AGX7_ORYSI Putative uncharacterized protein OS=Oryza... 62 3e-08 tr|A3A2L5|A3A2L5_ORYSJ Putative uncharacterized protein OS=Oryza... 62 3e-08 tr|Q3E9W5|Q3E9W5_ARATH Uncharacterized protein At4g25500.2 OS=Ar... 61 6e-08 tr|A8MRZ9|A8MRZ9_ARATH Uncharacterized protein At4g25500.3 OS=Ar... 61 6e-08 tr|Q9ZPX8|Q9ZPX8_ARATH Putative arginine/serine-rich splicing fa... 60 8e-08 tr|Q3EBF1|Q3EBF1_ARATH Uncharacterized protein At2g46610.2 OS=Ar... 60 8e-08 tr|Q6IVD0|Q6IVD0_MAIZE Arginine/serine-rich splicing factor 2 OS... 60 1e-07 tr|Q6IVC8|Q6IVC8_MAIZE Arginine/serine-rich splicing factor 2 va... 60 1e-07 tr|B4FFF9|B4FFF9_MAIZE Putative uncharacterized protein OS=Zea m... 60 1e-07 tr|A9NM66|A9NM66_PICSI Putative uncharacterized protein OS=Picea... 60 1e-07 tr|Q9M0K9|Q9M0K9_ARATH Splicing factor At-SRp40 (Fragment) OS=Ar... 59 2e-07 tr|B6TFI3|B6TFI3_MAIZE Arginine/serine-rich splicing factor RSP4... 59 2e-07 tr|B6SU77|B6SU77_MAIZE Arginine/serine-rich splicing factor RSP4... 59 2e-07
>tr|A9T025|A9T025_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_167387 PE=4 SV=1 Length = 233
Score = 72.8 bits (177), Expect = 1e-11 Identities = 33/40 (82%), Positives = 38/40 (95%) Frame = +3
Query: 3 RKNFAFIQYETQEEATKALEATNMSKILDRVITVEYATRE 122 RKNF F+QYETQ+EATKALE+TNMSK++DRVITVEYA RE Sbjct: 133 RKNFGFVQYETQDEATKALESTNMSKVMDRVITVEYAARE 172
>tr|B7FJ95|B7FJ95_MEDTR Putative uncharacterized protein (Fragment) OS=Medicago truncatula PE=2 SV=1 Length = 242
Score = 70.5 bits (171), Expect = 7e-11 Identities = 32/40 (80%), Positives = 38/40 (95%) Frame = +3
Query: 3 RKNFAFIQYETQEEATKALEATNMSKILDRVITVEYATRE 122 R+NFAF+QYETQE+ATKALE TNMSKILDRV++VEYA R+ Sbjct: 124 RRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRD 163
>tr|B7FHI0|B7FHI0_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 294
Score = 70.5 bits (171), Expect = 7e-11 Identities = 33/40 (82%), Positives = 38/40 (95%) Frame = +3
Query: 3 RKNFAFIQYETQEEATKALEATNMSKILDRVITVEYATRE 122 R+NFAFIQ+ETQEEATKALEATN+SK +DRVITVEYA R+ Sbjct: 129 RRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRD 168
>tr|Q6R4Q7|Q6R4Q7_VITRI Splicing factor-like protein OS=Vitis riparia PE=2 SV=1 Length = 478
Score = 68.9 bits (167), Expect = 2e-10 Identities = 31/40 (77%), Positives = 39/40 (97%) Frame = +3
Query: 3 RKNFAFIQYETQEEATKALEATNMSKILDRVITVEYATRE 122 R+NFAFIQYE+QE+AT+ALEATNMSK++DRVI+VEYA R+ Sbjct: 128 RRNFAFIQYESQEDATRALEATNMSKLMDRVISVEYAVRD 167
>tr|A5AVS4|A5AVS4_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021436 PE=4 SV=1 Length = 479
Score = 68.9 bits (167), Expect = 2e-10 Identities = 31/40 (77%), Positives = 39/40 (97%) Frame = +3
Query: 3 RKNFAFIQYETQEEATKALEATNMSKILDRVITVEYATRE 122 R+NFAFIQYE+QE+AT+ALEATNMSK++DRVI+VEYA R+ Sbjct: 128 RRNFAFIQYESQEDATRALEATNMSKLMDRVISVEYAVRD 167
>tr|A7QWH6|A7QWH6_VITVI Chromosome undetermined scaffold_203, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00008658001 PE=4 SV=1 Length = 185
Score = 68.6 bits (166), Expect = 3e-10 Identities = 31/40 (77%), Positives = 38/40 (95%) Frame = +3
Query: 3 RKNFAFIQYETQEEATKALEATNMSKILDRVITVEYATRE 122 R+NFAF+QYETQE+ATKALE T+MSKILDRV++VEYA R+ Sbjct: 126 RRNFAFVQYETQEDATKALECTHMSKILDRVVSVEYALRD 165
>tr|Q0KIM7|Q0KIM7_SOLDE Arginine/serine-rich splicing factor RSP41, putative OS=Solanum demissum GN=SDM1_4t00006 PE=4 SV=1 Length = 373
Score = 67.8 bits (164), Expect = 5e-10 Identities = 29/40 (72%), Positives = 39/40 (97%) Frame = +3
Query: 3 RKNFAFIQYETQEEATKALEATNMSKILDRVITVEYATRE 122 R+NFAF+QYETQE+AT+AL+ATNMSK++D+VITVEYA ++ Sbjct: 149 RRNFAFVQYETQEDATRALDATNMSKLMDQVITVEYANKD 188
>tr|A9NRJ0|A9NRJ0_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 299
Score = 66.6 bits (161), Expect = 1e-09 Identities = 31/40 (77%), Positives = 38/40 (95%) Frame = +3
Query: 3 RKNFAFIQYETQEEATKALEATNMSKILDRVITVEYATRE 122 R+NFAF+QYE+QE+ATKALE+T+MSK+LDRVITVEYA E Sbjct: 129 RRNFAFVQYESQEDATKALESTHMSKMLDRVITVEYAQGE 168
>tr|A7PY01|A7PY01_VITVI Chromosome chr15 scaffold_37, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00026247001 PE=4 SV=1 Length = 248
Score = 66.6 bits (161), Expect = 1e-09 Identities = 30/40 (75%), Positives = 38/40 (95%) Frame = +3
Query: 3 RKNFAFIQYETQEEATKALEATNMSKILDRVITVEYATRE 122 R+NFAFIQ+E+QE+ATKAL+ATNMSK +DRVI+VEYA R+ Sbjct: 128 RRNFAFIQFESQEDATKALDATNMSKFMDRVISVEYAARD 167
>tr|Q7XTJ6|Q7XTJ6_ORYSJ Os04g0118900 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0020P07.8 PE=4 SV=2 Length = 245
Score = 65.5 bits (158), Expect = 2e-09 Identities = 30/40 (75%), Positives = 38/40 (95%) Frame = +3
Query: 3 RKNFAFIQYETQEEATKALEATNMSKILDRVITVEYATRE 122 R+NFAF+Q+ETQEEATKALEAT+ +K+LDRVI+VEYA R+ Sbjct: 127 RRNFAFVQFETQEEATKALEATHSTKLLDRVISVEYAFRD 166
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