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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960089
Clone id TST39A01NGRL0006_H10
Library
Length 633
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_H10. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TCCGGAAGAATTTTGCATTTATTCAGTATGAGACGCAAGAAGAGGCAACAAAAGCTTTGG
AAGCCACGAATATGAGCAAAATATTGGATAGAGTCATAACAGTTGAATATGCAACCCGTG
AAGATGGGGACCGGGATCGTGGCAGTGTCAGTCCAGGGCGTGGAAGAGGAAGACGTGAGA
GCCCTGACTATGGACGAGGAAGAAGTCCTGCTTTCAGGCGATCAAGCCGATCACCACCTC
GTCGATATCGCAGTCAATCTCCCGATTATGGACCTTATGGAGGCCAACGCTAGAGAGGAG
ATACTTATCATCTAAGTAATGTGTATAATGCATGTAGGTGAAGCTCTTCACACTGTTCAG
CTGACGCAATTGATCATGCGTGAGAATCAGGAATTGTTTGTGTCAAGACATTGGAGTAAA
AGTGTCATCGTGTGCTACTTTTGAGAGGTCTCAAGTATTGAAAGTCGTAAAAAGTACCTT
CTAGAAGGCATTTATCCTGTCAAGCTTATAGATGTTCATAAAAAAAATGCCCACAAAAGC
AGGGAGTGTGGCATTTTTTTGAAGTAAATGCTACATTTCTTGCCAGCGAAGGACTTAAAG
GAGCTTTTACTNAAAAACAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P92964
Definition sp|P92964|RSP31_ARATH Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis thaliana
Align length 40
Score (bit) 63.5
E-value 8.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960089|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_H10, 5'
         (612 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P92964|RSP31_ARATH Arginine/serine-rich-splicing factor RSP31...    64   8e-10
sp|P92966|RSP41_ARATH Arginine/serine-rich-splicing factor RSP41...    63   1e-09
sp|P92965|RSP40_ARATH Arginine/serine-rich-splicing factor RSP40...    61   5e-09
sp|P38741|YHC4_YEAST Uncharacterized RNA-binding protein YHL024W...    36   0.18 
sp|Q8CGC6|RBM28_MOUSE RNA-binding protein 28 OS=Mus musculus GN=...    35   0.30 
sp|Q28G87|LARP7_XENTR La-related protein 7 OS=Xenopus tropicalis...    34   0.52 
sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4 OS=Caenorhabd...    33   0.88 
sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein...    33   0.88 
sp|Q9NW13|RBM28_HUMAN RNA-binding protein 28 OS=Homo sapiens GN=...    33   1.2  
sp|Q10422|YDC1_SCHPO Uncharacterized RNA-binding protein C25G10....    33   1.5  
sp|Q9V3G3|PPIE_DROME Peptidyl-prolyl cis-trans isomerase E OS=Dr...    33   1.5  
sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sa...    33   1.5  
sp|Q7ZWE3|LARP7_DANRE La-related protein 7 OS=Danio rerio GN=lar...    33   1.5  
sp|O42847|YFH9_SCHPO Uncharacterized RNA-binding protein C23A1.0...    32   2.0  
sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing prot...    32   2.0  
sp|O94290|IST3_SCHPO U2 snRNP component ist3 OS=Schizosaccharomy...    32   2.6  
sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic ...    32   3.3  
sp|Q5XI01|LARP7_RAT La-related protein 7 OS=Rattus norvegicus GN...    32   3.3  
sp|Q05CL8|LARP7_MOUSE La-related protein 7 OS=Mus musculus GN=La...    32   3.3  
sp|Q4R627|LARP7_MACFA La-related protein 7 OS=Macaca fasciculari...    32   3.3  
sp|Q4G0J3|LARP7_HUMAN La-related protein 7 OS=Homo sapiens GN=LA...    32   3.3  
sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=...    31   5.7  
sp|Q754W7|NCBP2_ASHGO Nuclear cap-binding protein subunit 2 OS=A...    31   5.7  
sp|Q11113|YX06_CAEEL Uncharacterized protein C03B1.6 OS=Caenorha...    31   5.8  
sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norve...    30   7.5  
sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus muscul...    30   7.5  
sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapie...    30   7.5  
sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic ...    30   7.5  
sp|P15771|NUCL_CHICK Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1       30   7.5  
sp|Q9UXS5|RLA0_PYRAB Acidic ribosomal protein P0 homolog OS=Pyro...    30   7.5  

>sp|P92964|RSP31_ARATH Arginine/serine-rich-splicing factor RSP31
           OS=Arabidopsis thaliana GN=RSP31 PE=1 SV=2
          Length = 264

 Score = 63.5 bits (153), Expect = 8e-10
 Identities = 28/40 (70%), Positives = 37/40 (92%)
 Frame = +3

Query: 3   RKNFAFIQYETQEEATKALEATNMSKILDRVITVEYATRE 122
           R+NF+F+Q+ETQE+ATKALEAT  SKILDRV++VEYA ++
Sbjct: 126 RRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKD 165


>sp|P92966|RSP41_ARATH Arginine/serine-rich-splicing factor RSP41
           OS=Arabidopsis thaliana GN=RSP41 PE=1 SV=2
          Length = 356

 Score = 62.8 bits (151), Expect = 1e-09
 Identities = 27/40 (67%), Positives = 37/40 (92%)
 Frame = +3

Query: 3   RKNFAFIQYETQEEATKALEATNMSKILDRVITVEYATRE 122
           R+NFAFIQYE QE+AT+AL+ATN SK++D+VI+VEYA ++
Sbjct: 129 RRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKD 168


>sp|P92965|RSP40_ARATH Arginine/serine-rich-splicing factor RSP40
           OS=Arabidopsis thaliana GN=RSP40 PE=1 SV=2
          Length = 350

 Score = 60.8 bits (146), Expect = 5e-09
 Identities = 26/40 (65%), Positives = 37/40 (92%)
 Frame = +3

Query: 3   RKNFAFIQYETQEEATKALEATNMSKILDRVITVEYATRE 122
           R+NFAFIQYE QE+AT+AL+A+N SK++D+VI+VEYA ++
Sbjct: 130 RRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKD 169


>sp|P38741|YHC4_YEAST Uncharacterized RNA-binding protein YHL024W
           OS=Saccharomyces cerevisiae GN=YHL024W PE=1 SV=1
          Length = 713

 Score = 35.8 bits (81), Expect = 0.18
 Identities = 16/33 (48%), Positives = 24/33 (72%)
 Frame = +3

Query: 12  FAFIQYETQEEATKALEATNMSKILDRVITVEY 110
           FAFI+YET+E A  ALE+ N +  L++ + V+Y
Sbjct: 385 FAFIKYETEEAAAAALESENHAIFLNKTMHVQY 417


>sp|Q8CGC6|RBM28_MOUSE RNA-binding protein 28 OS=Mus musculus
           GN=Rbm28 PE=1 SV=3
          Length = 750

 Score = 35.0 bits (79), Expect = 0.30
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +3

Query: 6   KNFAFIQYETQEEATKALEATNMSKILDRVITVEYA 113
           + FAF+Q++   EA KAL+  NM +I  R + V++A
Sbjct: 154 RGFAFVQFKNLLEAGKALKGANMKEIKGRTVAVDWA 189


>sp|Q28G87|LARP7_XENTR La-related protein 7 OS=Xenopus tropicalis
           GN=larp7 PE=2 SV=1
          Length = 593

 Score = 34.3 bits (77), Expect = 0.52
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +3

Query: 6   KNFAFIQYETQEEATKALEATN 71
           K FAFI++ETQE+A KA+E  N
Sbjct: 168 KGFAFIEFETQEQAAKAIEVLN 189


>sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4
           OS=Caenorhabditis elegans GN=sap-49 PE=3 SV=2
          Length = 388

 Score = 33.5 bits (75), Expect = 0.88
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +3

Query: 6   KNFAFIQYETQEEATKALEATNMSKILDRVITVEYA 113
           K FAFI + + E +  ALEA N   + +R ITV YA
Sbjct: 142 KGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 177


>sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25
           OS=Oryza sativa subsp. japonica GN=Os03g0826400 PE=2
           SV=1
          Length = 312

 Score = 33.5 bits (75), Expect = 0.88
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 6   KNFAFIQYETQEEATKALEATNMSKILDRVITVEYATR 119
           K FAF+ YE Q     A++  N +K+L R++ V++ ++
Sbjct: 77  KGFAFLAYEDQRSTILAVDNLNGAKVLGRIVRVDHVSK 114


>sp|Q9NW13|RBM28_HUMAN RNA-binding protein 28 OS=Homo sapiens
           GN=RBM28 PE=1 SV=3
          Length = 759

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 6   KNFAFIQYETQEEATKALEATNMSKILDRVITVEYA 113
           + F F+Q++   EA KAL+  NM +I  R + V++A
Sbjct: 154 RGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWA 189


>sp|Q10422|YDC1_SCHPO Uncharacterized RNA-binding protein C25G10.01
           OS=Schizosaccharomyces pombe GN=SPAC25G10.01 PE=1 SV=1
          Length = 297

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 6   KNFAFIQYETQEEATKALEATNMSKILDRVITVEYATR 119
           + F F+ + T EEAT A++  N  +   RV+ V+ A R
Sbjct: 142 RGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKR 179
tr_hit_id A9T025
Definition tr|A9T025|A9T025_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 40
Score (bit) 72.8
E-value 1.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960089|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_H10, 5'
         (612 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T025|A9T025_PHYPA Predicted protein OS=Physcomitrella paten...    73   1e-11
tr|B7FJ95|B7FJ95_MEDTR Putative uncharacterized protein (Fragmen...    70   7e-11
tr|B7FHI0|B7FHI0_MEDTR Putative uncharacterized protein OS=Medic...    70   7e-11
tr|Q6R4Q7|Q6R4Q7_VITRI Splicing factor-like protein OS=Vitis rip...    69   2e-10
tr|A5AVS4|A5AVS4_VITVI Putative uncharacterized protein OS=Vitis...    69   2e-10
tr|A7QWH6|A7QWH6_VITVI Chromosome undetermined scaffold_203, who...    69   3e-10
tr|Q0KIM7|Q0KIM7_SOLDE Arginine/serine-rich splicing factor RSP4...    68   5e-10
tr|A9NRJ0|A9NRJ0_PICSI Putative uncharacterized protein OS=Picea...    67   1e-09
tr|A7PY01|A7PY01_VITVI Chromosome chr15 scaffold_37, whole genom...    67   1e-09
tr|Q7XTJ6|Q7XTJ6_ORYSJ Os04g0118900 protein OS=Oryza sativa subs...    65   2e-09
tr|Q01MR9|Q01MR9_ORYSA H0716A07.4 protein OS=Oryza sativa GN=H07...    65   2e-09
tr|B8AUJ5|B8AUJ5_ORYSI Putative uncharacterized protein OS=Oryza...    65   2e-09
tr|A9NTP2|A9NTP2_PICSI Putative uncharacterized protein OS=Picea...    64   5e-09
tr|B8LPT2|B8LPT2_PICSI Putative uncharacterized protein OS=Picea...    64   7e-09
tr|Q3E8C5|Q3E8C5_ARATH Uncharacterized protein At5g52040.2 OS=Ar...    63   2e-08
tr|B7FHT4|B7FHT4_MEDTR Putative uncharacterized protein OS=Medic...    62   3e-08
tr|Q6Z725|Q6Z725_ORYSJ Os02g0122800 protein OS=Oryza sativa subs...    62   3e-08
tr|B8AGX7|B8AGX7_ORYSI Putative uncharacterized protein OS=Oryza...    62   3e-08
tr|A3A2L5|A3A2L5_ORYSJ Putative uncharacterized protein OS=Oryza...    62   3e-08
tr|Q3E9W5|Q3E9W5_ARATH Uncharacterized protein At4g25500.2 OS=Ar...    61   6e-08
tr|A8MRZ9|A8MRZ9_ARATH Uncharacterized protein At4g25500.3 OS=Ar...    61   6e-08
tr|Q9ZPX8|Q9ZPX8_ARATH Putative arginine/serine-rich splicing fa...    60   8e-08
tr|Q3EBF1|Q3EBF1_ARATH Uncharacterized protein At2g46610.2 OS=Ar...    60   8e-08
tr|Q6IVD0|Q6IVD0_MAIZE Arginine/serine-rich splicing factor 2 OS...    60   1e-07
tr|Q6IVC8|Q6IVC8_MAIZE Arginine/serine-rich splicing factor 2 va...    60   1e-07
tr|B4FFF9|B4FFF9_MAIZE Putative uncharacterized protein OS=Zea m...    60   1e-07
tr|A9NM66|A9NM66_PICSI Putative uncharacterized protein OS=Picea...    60   1e-07
tr|Q9M0K9|Q9M0K9_ARATH Splicing factor At-SRp40 (Fragment) OS=Ar...    59   2e-07
tr|B6TFI3|B6TFI3_MAIZE Arginine/serine-rich splicing factor RSP4...    59   2e-07
tr|B6SU77|B6SU77_MAIZE Arginine/serine-rich splicing factor RSP4...    59   2e-07

>tr|A9T025|A9T025_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_167387 PE=4 SV=1
          Length = 233

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 33/40 (82%), Positives = 38/40 (95%)
 Frame = +3

Query: 3   RKNFAFIQYETQEEATKALEATNMSKILDRVITVEYATRE 122
           RKNF F+QYETQ+EATKALE+TNMSK++DRVITVEYA RE
Sbjct: 133 RKNFGFVQYETQDEATKALESTNMSKVMDRVITVEYAARE 172


>tr|B7FJ95|B7FJ95_MEDTR Putative uncharacterized protein (Fragment)
           OS=Medicago truncatula PE=2 SV=1
          Length = 242

 Score = 70.5 bits (171), Expect = 7e-11
 Identities = 32/40 (80%), Positives = 38/40 (95%)
 Frame = +3

Query: 3   RKNFAFIQYETQEEATKALEATNMSKILDRVITVEYATRE 122
           R+NFAF+QYETQE+ATKALE TNMSKILDRV++VEYA R+
Sbjct: 124 RRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRD 163


>tr|B7FHI0|B7FHI0_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 294

 Score = 70.5 bits (171), Expect = 7e-11
 Identities = 33/40 (82%), Positives = 38/40 (95%)
 Frame = +3

Query: 3   RKNFAFIQYETQEEATKALEATNMSKILDRVITVEYATRE 122
           R+NFAFIQ+ETQEEATKALEATN+SK +DRVITVEYA R+
Sbjct: 129 RRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRD 168


>tr|Q6R4Q7|Q6R4Q7_VITRI Splicing factor-like protein OS=Vitis
           riparia PE=2 SV=1
          Length = 478

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 31/40 (77%), Positives = 39/40 (97%)
 Frame = +3

Query: 3   RKNFAFIQYETQEEATKALEATNMSKILDRVITVEYATRE 122
           R+NFAFIQYE+QE+AT+ALEATNMSK++DRVI+VEYA R+
Sbjct: 128 RRNFAFIQYESQEDATRALEATNMSKLMDRVISVEYAVRD 167


>tr|A5AVS4|A5AVS4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_021436 PE=4 SV=1
          Length = 479

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 31/40 (77%), Positives = 39/40 (97%)
 Frame = +3

Query: 3   RKNFAFIQYETQEEATKALEATNMSKILDRVITVEYATRE 122
           R+NFAFIQYE+QE+AT+ALEATNMSK++DRVI+VEYA R+
Sbjct: 128 RRNFAFIQYESQEDATRALEATNMSKLMDRVISVEYAVRD 167


>tr|A7QWH6|A7QWH6_VITVI Chromosome undetermined scaffold_203, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00008658001 PE=4 SV=1
          Length = 185

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 31/40 (77%), Positives = 38/40 (95%)
 Frame = +3

Query: 3   RKNFAFIQYETQEEATKALEATNMSKILDRVITVEYATRE 122
           R+NFAF+QYETQE+ATKALE T+MSKILDRV++VEYA R+
Sbjct: 126 RRNFAFVQYETQEDATKALECTHMSKILDRVVSVEYALRD 165


>tr|Q0KIM7|Q0KIM7_SOLDE Arginine/serine-rich splicing factor RSP41,
           putative OS=Solanum demissum GN=SDM1_4t00006 PE=4 SV=1
          Length = 373

 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 29/40 (72%), Positives = 39/40 (97%)
 Frame = +3

Query: 3   RKNFAFIQYETQEEATKALEATNMSKILDRVITVEYATRE 122
           R+NFAF+QYETQE+AT+AL+ATNMSK++D+VITVEYA ++
Sbjct: 149 RRNFAFVQYETQEDATRALDATNMSKLMDQVITVEYANKD 188


>tr|A9NRJ0|A9NRJ0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 299

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 31/40 (77%), Positives = 38/40 (95%)
 Frame = +3

Query: 3   RKNFAFIQYETQEEATKALEATNMSKILDRVITVEYATRE 122
           R+NFAF+QYE+QE+ATKALE+T+MSK+LDRVITVEYA  E
Sbjct: 129 RRNFAFVQYESQEDATKALESTHMSKMLDRVITVEYAQGE 168


>tr|A7PY01|A7PY01_VITVI Chromosome chr15 scaffold_37, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026247001
           PE=4 SV=1
          Length = 248

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 30/40 (75%), Positives = 38/40 (95%)
 Frame = +3

Query: 3   RKNFAFIQYETQEEATKALEATNMSKILDRVITVEYATRE 122
           R+NFAFIQ+E+QE+ATKAL+ATNMSK +DRVI+VEYA R+
Sbjct: 128 RRNFAFIQFESQEDATKALDATNMSKFMDRVISVEYAARD 167


>tr|Q7XTJ6|Q7XTJ6_ORYSJ Os04g0118900 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0020P07.8 PE=4 SV=2
          Length = 245

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 30/40 (75%), Positives = 38/40 (95%)
 Frame = +3

Query: 3   RKNFAFIQYETQEEATKALEATNMSKILDRVITVEYATRE 122
           R+NFAF+Q+ETQEEATKALEAT+ +K+LDRVI+VEYA R+
Sbjct: 127 RRNFAFVQFETQEEATKALEATHSTKLLDRVISVEYAFRD 166