NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960098
Clone id TST39A01NGRL0006_H19
Library
Length 616
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_H19. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TAAGTGGTAGTCGACGAGCTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGTGGGAGAGA
GAGAGAGAGAGATGGCTTCCAGTAAGGGCATAGTCGCACTGTTCCTGGTGCTCATGGTCT
CTTTGGCCGGACTGATGGGTGCCGCCGCGCAGCCTCCTCCTCCGGCTCTGCAGTGCACTC
CCCTGCTAAACCTTGTGCCGGCTTGCCAGGCTTTAACTCTCTTCCCCGCCCTTGCCCCAG
TGCTCACCTCCGTCTGCTGCAACGCTCTCTCCACCGCCAACCTCCTGGGCGTAGGACTGG
GTCCCAACGCCATCTGCCTCTGCGTGAAGCTCACCTTGCCCAACCTATCGCTCACCACCT
GCCCTGGCCTCAGCATCGACCTCGCCCGCATCATCTTCGGCTCCCACGGAAGCTGCGTCT
GATCTCCTACATCGTCAGCCTGCAGCAGCTTCATGCAGTTCTGTTCATGTCTTGTTGTAT
TTCTGTATGCGGATTTTATGTTCTCCGCCATGCTAGCTCGTTTCTGTACTACCTTGTAGA
TTTGGATTGATGCTTTGTTCTCTGGCCCTCTCTCGATCTGGTTGGACGTAGAGTTTTAAT
GATGACGTTGTTTGGT
■■Homology search results ■■ -
sp_hit_id P26328
Definition sp|P26328|VSI3_TRYBB Variant surface glycoprotein ILTAT 1.23 OS=Trypanosoma brucei brucei
Align length 114
Score (bit) 34.3
E-value 0.53
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960098|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_H19, 5'
         (616 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P26328|VSI3_TRYBB Variant surface glycoprotein ILTAT 1.23 OS=...    34   0.53 
sp|Q8K3T3|PER1_SPAJD Period circadian protein homolog 1 OS=Spala...    32   2.6  
sp|Q93Z00|TCP14_ARATH Transcription factor TCP14 OS=Arabidopsis ...    32   3.4  
sp|P24868|CG21_YEAST G2/mitotic-specific cyclin-1 OS=Saccharomyc...    32   3.4  
sp|Q2VIS4|FILA2_MOUSE Filaggrin-2 OS=Mus musculus GN=Flg2 PE=2 SV=2    31   4.4  
sp|Q9UJ04|TSYL4_HUMAN Testis-specific Y-encoded-like protein 4 O...    31   5.8  
sp|O15534|PER1_HUMAN Period circadian protein homolog 1 OS=Homo ...    30   9.8  

>sp|P26328|VSI3_TRYBB Variant surface glycoprotein ILTAT 1.23
           OS=Trypanosoma brucei brucei PE=2 SV=1
          Length = 532

 Score = 34.3 bits (77), Expect = 0.53
 Identities = 28/114 (24%), Positives = 48/114 (42%)
 Frame = -1

Query: 538 YKVVQKRASMAENIKSAYRNTTRHEQNCMKLLQADDVGDQTQLPWEPKMMRARSMLRPGQ 359
           Y       S AE I   ++ T + E   +K           Q+PW   +  A  M+R  Q
Sbjct: 311 YSATGCTGSDAEGICVMFKTTAKGEGKAVK-----------QIPWVLTLHNAAEMIRKQQ 359

Query: 358 VVSDRLGKVSFTQRQMALGPSPTPRRLAVERALQQTEVSTGARAGKRVKAWQAG 197
            V+ ++  ++   + +         +L + + LQQT  +  AR GK++   QAG
Sbjct: 360 AVNGKIDSLNQELQAIQTAAYALKPQLEMYKRLQQT--TEKARPGKQLTEMQAG 411


>sp|Q8K3T3|PER1_SPAJD Period circadian protein homolog 1 OS=Spalax
            judaei GN=PER1 PE=2 SV=1
          Length = 1285

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = -3

Query: 329  LHAEADGVGTQSYAQEVGGGESVAADGGEHWGKGGEES 216
            L +E DG+G +    E GGGE     GG   G+GGEE+
Sbjct: 1212 LFSELDGLGLEP--MEEGGGEGGGGGGGGGEGEGGEEA 1247


>sp|Q93Z00|TCP14_ARATH Transcription factor TCP14 OS=Arabidopsis
           thaliana GN=TCP14 PE=2 SV=1
          Length = 489

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
 Frame = -3

Query: 293 YAQEVGGGESVAADGGEHWGK--------GGEES*SLASRHKV*QGSALQSRRRRLRGGT 138
           Y   V G  S A   G H+           G++  +  S H++ + S      R   GG 
Sbjct: 381 YRSGVSGVPSGAVSSGLHFMNFAAPMAFLTGQQQLATTSNHEINEDSNNNEGGRSDGGGD 440

Query: 137 HQSGQRDHEHQEQ 99
           H + QR H HQ+Q
Sbjct: 441 HHNTQRHHHHQQQ 453


>sp|P24868|CG21_YEAST G2/mitotic-specific cyclin-1 OS=Saccharomyces
           cerevisiae GN=CLB1 PE=1 SV=1
          Length = 471

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = -1

Query: 559 NKASIQIYKVVQKRASMAENIKSAYRNTTRHEQNCMKLLQADDVGDQTQLPWEPKMMRAR 380
           NK +I  Y   ++      N  S + N+T    +C +L+ +++    TQ+ W+ K+MR  
Sbjct: 99  NKENIPEYGYSEQEKQQCSNDDSFHTNSTA--LSCNRLIYSENKSISTQMEWQKKIMRED 156

Query: 379 S 377
           S
Sbjct: 157 S 157


>sp|Q2VIS4|FILA2_MOUSE Filaggrin-2 OS=Mus musculus GN=Flg2 PE=2 SV=2
          Length = 2362

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
 Frame = -3

Query: 296 SYAQEVGGGESVAADGGEHWGKGGEES*S----LASRHKV*QGSALQSRRRRLRGGTHQS 129
           S +Q+ GGG   +   GEH    G  S S      SRH    G     R +    G H S
Sbjct: 577 SGSQQHGGGSGQSTGFGEHESSSGHSSSSGQHRSGSRHSSGSGKHESGRSQSSGSGHHGS 636

Query: 128 GQRDH 114
           G + H
Sbjct: 637 GSQQH 641


>sp|Q9UJ04|TSYL4_HUMAN Testis-specific Y-encoded-like protein 4
           OS=Homo sapiens GN=TSPYL4 PE=2 SV=2
          Length = 414

 Score = 30.8 bits (68), Expect = 5.8
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = -1

Query: 616 TKQRHH*NSTSNQIERGPENKASIQIYKVVQKRASMAENIKSAYRNTTRHEQNCMKLLQA 437
           TK+R    + S  +E+  E  A+++  KVVQK   +A  +K   R       NCM  L+A
Sbjct: 154 TKKR----AISAAVEKEGEAGAAMEEKKVVQKEKKVAGGVKEETRPRAPKINNCMDSLEA 209

Query: 436 DD 431
            D
Sbjct: 210 ID 211


>sp|O15534|PER1_HUMAN Period circadian protein homolog 1 OS=Homo
            sapiens GN=PER1 PE=1 SV=2
          Length = 1290

 Score = 30.0 bits (66), Expect = 9.8
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -3

Query: 329  LHAEADGVGTQSYAQEVGGGESVAADGGEHWGKGGEES 216
            L +E DG+G +    E GGGE  ++ GG   G+G EE+
Sbjct: 1219 LFSELDGLGLEP--MEEGGGEQGSSGGGSGEGEGCEEA 1254
tr_hit_id Q0F377
Definition tr|Q0F377|Q0F377_9PROT TraG OS=Mariprofundus ferrooxydans PV-1
Align length 66
Score (bit) 40.4
E-value 0.084
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960098|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_H19, 5'
         (616 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0F377|Q0F377_9PROT TraG OS=Mariprofundus ferrooxydans PV-1 G...    40   0.084
tr|Q3JSX2|Q3JSX2_BURP1 Putative uncharacterized protein OS=Burkh...    35   2.7  
tr|B1XZJ9|B1XZJ9_LEPCP Putative metal dependent phosphohydrolase...    35   4.6  

>tr|Q0F377|Q0F377_9PROT TraG OS=Mariprofundus ferrooxydans PV-1
           GN=SPV1_04568 PE=4 SV=1
          Length = 974

 Score = 40.4 bits (93), Expect = 0.084
 Identities = 23/66 (34%), Positives = 29/66 (43%)
 Frame = -1

Query: 445 LQADDVGDQTQLPWEPKMMRARSMLRPGQVVSDRLGKVSFTQRQMALGPSPTPRRLAVER 266
           +  D  GD     WE +M  A   L PG  VSD  G V   QR+  L PS  P    V++
Sbjct: 790 MDIDIDGDGRVAGWEAEMQEATGTLEPGHRVSDPTGTVDHKQREADLDPSKQPALPHVDQ 849

Query: 265 ALQQTE 248
            +   E
Sbjct: 850 KISDAE 855


>tr|Q3JSX2|Q3JSX2_BURP1 Putative uncharacterized protein
           OS=Burkholderia pseudomallei (strain 1710b)
           GN=BURPS1710b_1933 PE=4 SV=1
          Length = 1038

 Score = 35.4 bits (80), Expect = 2.7
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
 Frame = -3

Query: 287 QEVGGGESVAADGGEHWGK-----GGEES*SLASRHKV*QGSALQSRRRRLRGGTHQSGQ 123
           +  G G   A DG E  G+     GG    +   RH+   G     RRR   G   ++G 
Sbjct: 582 ERAGDGRHEAGDGRERAGRARRAAGGAGECAGDRRHEARDGRERARRRRAAGGAGERAGD 641

Query: 122 RDHEHQEQCDYALTG 78
           R H+ +E+C+    G
Sbjct: 642 RRHDVRERCERGARG 656


>tr|B1XZJ9|B1XZJ9_LEPCP Putative metal dependent phosphohydrolase
           OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 /
           SP-6) GN=Lcho_4311 PE=4 SV=1
          Length = 408

 Score = 34.7 bits (78), Expect = 4.6
 Identities = 30/123 (24%), Positives = 50/123 (40%)
 Frame = -1

Query: 616 TKQRHH*NSTSNQIERGPENKASIQIYKVVQKRASMAENIKSAYRNTTRHEQNCMKLLQA 437
           T + HH  S      RG   K +  + +V++       NI    +      Q  ++ L  
Sbjct: 236 TVEDHHEQSDGGGYPRGV--KEASDLARVLRAADIYMANISPRAQRPALAPQVAVRQLFQ 293

Query: 436 DDVGDQTQLPWEPKMMRARSMLRPGQVVSDRLGKVSFTQRQMALGPSPTPRRLAVERALQ 257
            + G     P    M+RA  +  PG VV  R G+++   R+ A GP+P    ++  R + 
Sbjct: 294 QEQGS----PIATAMLRAIGIFPPGDVVQLRSGEIAVVTRRAAKGPAPLAASVSNARGVP 349

Query: 256 QTE 248
             E
Sbjct: 350 VLE 352