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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960103
Clone id TST39A01NGRL0006_H24
Library
Length 616
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_H24. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GTATGAAAGAAGATGCTTGTCATGATGTGATAATTTCACACGATACCATGGATGTATCAT
CTGATACACATGATAAGATGCAAGTGTCTATGTGTGTTTCTCGAGAAGTGTATGCAAACG
ATGATGATACAAAACAGGATAAGGATGGTATCATTGATGATGCTTTCATATATGGTTTAC
ATTCATATGGTTCAACATGTGATATTGCTTTCATATATGGTTTATATTCATATGGTTCAA
CATGTGGTGAAACCCCTACTGATGAAAATTCCTATTCAGAGGGGGTACCAATCTTATAGA
GTGAGGATGGGCTTCCAATTTACACAGGTATTTTTGAAGAAGACGTGACATGTATTTTTG
AAGAAGACCAGACAATGAACTTGTGCATAGACATTAGGAAAAATTTGAACTCTCAAAGGG
GCACTATAAGGAGGTTTGACTTTGCCTCTCTTATCCAAAGTGGGCAACCCAATGAAGTAC
ATAAACGCTTTGTCAAAACCCTATCAACCAACATATCATTGGAAAGATCTTCGAAAGTAG
GTTCTAAATCCCCAAACTCCAACAAATCTGGAGTTGATTTCTAGAAGTTATGGCCTCCCC
ACTGAAGCTGAAATCT
■■Homology search results ■■ -
sp_hit_id P61778
Definition sp|P61778|HIS5_BACC1 Imidazole glycerol phosphate synthase subunit hisH OS=Bacillus cereus (strain ATCC 10987)
Align length 44
Score (bit) 35.0
E-value 0.31
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960103|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_H24, 5'
         (616 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P61778|HIS5_BACC1 Imidazole glycerol phosphate synthase subun...    35   0.31 
sp|Q6HLE5|HIS5_BACHK Imidazole glycerol phosphate synthase subun...    34   0.52 
sp|Q63DX0|HIS5_BACCZ Imidazole glycerol phosphate synthase subun...    34   0.68 
sp|Q81T60|HIS5_BACAN Imidazole glycerol phosphate synthase subun...    34   0.68 
sp|P24862|CCNB_PATVU G2/mitotic-specific cyclin-B OS=Patella vul...    33   0.89 
sp|Q81G04|HIS5_BACCR Imidazole glycerol phosphate synthase subun...    32   2.6  
sp|Q6C835|DBP7_YARLI ATP-dependent RNA helicase DBP7 OS=Yarrowia...    31   4.5  
sp|Q69YN4|VIR_HUMAN Protein virilizer homolog OS=Homo sapiens GN...    30   7.5  
sp|Q66FC6|SYK3_YERPS Putative lysyl-tRNA synthetase OS=Yersinia ...    30   7.5  
sp|A4TRQ1|SYK3_YERPP Putative lysyl-tRNA synthetase OS=Yersinia ...    30   7.5  
sp|Q1CEE4|SYK3_YERPN Putative lysyl-tRNA synthetase OS=Yersinia ...    30   7.5  
sp|Q8ZIX3|SYK3_YERPE Putative lysyl-tRNA synthetase OS=Yersinia ...    30   7.5  
sp|Q1C0Y9|SYK3_YERPA Putative lysyl-tRNA synthetase OS=Yersinia ...    30   7.5  
sp|A7FMZ1|SYK3_YERP3 Putative lysyl-tRNA synthetase OS=Yersinia ...    30   7.5  
sp|A8G8T8|SYK3_SERP5 Putative lysyl-tRNA synthetase OS=Serratia ...    30   7.5  
sp|O35550|RABE1_RAT Rab GTPase-binding effector protein 1 OS=Rat...    30   9.8  
sp|Q15276|RABE1_HUMAN Rab GTPase-binding effector protein 1 OS=H...    30   9.8  
sp|P81872|NMU_LITCE Neuromedin-U OS=Litoria caerulea GN=nmu PE=1...    30   9.8  
sp|Q6C1H8|EIF3B_YARLI Eukaryotic translation initiation factor 3...    30   9.8  
sp|Q9V727|ASX_DROME Polycomb protein Asx OS=Drosophila melanogas...    30   9.8  
sp|P15305|DYHC_ONCMY Dynein heavy chain (Fragment) OS=Oncorhynch...    30   9.9  

>sp|P61778|HIS5_BACC1 Imidazole glycerol phosphate synthase subunit
           hisH OS=Bacillus cereus (strain ATCC 10987) GN=hisH PE=3
           SV=1
          Length = 209

 Score = 35.0 bits (79), Expect = 0.31
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 144 DGIIDDAFIYGLHSYGSTCDIAFIYGLYSYGSTCGETPTDENSY 275
           +G+ D +F+Y +HSY + C    +YG+  YG         EN Y
Sbjct: 132 NGVEDGSFVYYVHSYYADCPNEIVYGISDYGVKVPGFVAKENIY 175


>sp|Q6HLE5|HIS5_BACHK Imidazole glycerol phosphate synthase subunit
           hisH OS=Bacillus thuringiensis subsp. konkukian GN=hisH
           PE=3 SV=1
          Length = 209

 Score = 34.3 bits (77), Expect = 0.52
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 144 DGIIDDAFIYGLHSYGSTCDIAFIYGLYSYG 236
           +G+ D +F+Y +HSY + C    +YG+  YG
Sbjct: 132 NGVEDSSFVYYVHSYYADCPNEIVYGISDYG 162


>sp|Q63DX0|HIS5_BACCZ Imidazole glycerol phosphate synthase subunit
           hisH OS=Bacillus cereus (strain ZK / E33L) GN=hisH PE=3
           SV=1
          Length = 209

 Score = 33.9 bits (76), Expect = 0.68
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 144 DGIIDDAFIYGLHSYGSTCDIAFIYGLYSYG 236
           +G+ D +F+Y +HSY + C    +YG+  YG
Sbjct: 132 NGVEDGSFVYYVHSYYADCPNEIVYGISDYG 162


>sp|Q81T60|HIS5_BACAN Imidazole glycerol phosphate synthase subunit
           hisH OS=Bacillus anthracis GN=hisH PE=3 SV=1
          Length = 209

 Score = 33.9 bits (76), Expect = 0.68
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 144 DGIIDDAFIYGLHSYGSTCDIAFIYGLYSYG 236
           +G+ D +F+Y +HSY + C    +YG+  YG
Sbjct: 132 NGVEDGSFVYYVHSYYADCPNEIVYGISDYG 162


>sp|P24862|CCNB_PATVU G2/mitotic-specific cyclin-B OS=Patella
           vulgata PE=2 SV=1
          Length = 408

 Score = 33.5 bits (75), Expect = 0.89
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +3

Query: 9   EDACHDVIISHDTMDVSSDTHDKMQVSMCVSREVYANDDDTKQDKDGIIDDAFIYGLH 182
           +DA   ++ + D MD+S D  D     +    ++ AND D  Q     ++D + Y  H
Sbjct: 105 KDAIEPIVSTVDLMDISEDKPDAFSKVLLTVEDIDANDKDNPQLVSDYVNDIYHYMRH 162


>sp|Q81G04|HIS5_BACCR Imidazole glycerol phosphate synthase subunit
           hisH OS=Bacillus cereus (strain ATCC 14579 / DSM 31)
           GN=hisH PE=3 SV=1
          Length = 209

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 144 DGIIDDAFIYGLHSYGSTCDIAFIYGLYSYG 236
           +G++D +F+Y +HSY + C    + G+  YG
Sbjct: 132 NGLVDGSFVYYVHSYYADCPDEIVCGVSDYG 162


>sp|Q6C835|DBP7_YARLI ATP-dependent RNA helicase DBP7 OS=Yarrowia
           lipolytica GN=DBP7 PE=3 SV=1
          Length = 799

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 247 PHVEPYEYKPYMKAISHVEPYECKPYMKASSMIP 146
           P+ +PYE KPY K     +PYE K Y K  +  P
Sbjct: 74  PYDKPYEKKPYEKKPFEKKPYEKKSYDKPVASKP 107


>sp|Q69YN4|VIR_HUMAN Protein virilizer homolog OS=Homo sapiens
           GN=KIAA1429 PE=1 SV=2
          Length = 1812

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +3

Query: 111 YANDDDTKQDKDGIIDDAFIYGLHSYGSTCDIAFIYGLYSYGSTCGETPTDENSYSE 281
           Y  D++     DG+IDDAF   L    ST  +  I  L+S+   C  T ++E  +S+
Sbjct: 739 YDQDEEEGLQSDGVIDDAFALWLQD--STQTLQCITELFSHFQRC--TASEETDHSD 791


>sp|Q66FC6|SYK3_YERPS Putative lysyl-tRNA synthetase OS=Yersinia
           pseudotuberculosis GN=poxA PE=3 SV=1
          Length = 325

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 17/70 (24%), Positives = 35/70 (50%)
 Frame = +3

Query: 72  DKMQVSMCVSREVYANDDDTKQDKDGIIDDAFIYGLHSYGSTCDIAFIYGLYSYGSTCGE 251
           +K Q+    ++   +N  DT++D+D ++   F  G+  Y      AFIY   +  ++  E
Sbjct: 165 EKAQLREVAAKLDLSNIADTEEDRDTLLQLLFTVGVEPYIGRDKPAFIYHFPASQASLAE 224

Query: 252 TPTDENSYSE 281
             T+++  +E
Sbjct: 225 ISTEDHRVAE 234


>sp|A4TRQ1|SYK3_YERPP Putative lysyl-tRNA synthetase OS=Yersinia
           pestis (strain Pestoides F) GN=poxA PE=3 SV=1
          Length = 325

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 17/70 (24%), Positives = 35/70 (50%)
 Frame = +3

Query: 72  DKMQVSMCVSREVYANDDDTKQDKDGIIDDAFIYGLHSYGSTCDIAFIYGLYSYGSTCGE 251
           +K Q+    ++   +N  DT++D+D ++   F  G+  Y      AFIY   +  ++  E
Sbjct: 165 EKAQLREVAAKLDLSNIADTEEDRDTLLQLLFTVGVEPYIGRDKPAFIYHFPASQASLAE 224

Query: 252 TPTDENSYSE 281
             T+++  +E
Sbjct: 225 ISTEDHRVAE 234
tr_hit_id A7CP34
Definition tr|A7CP34|A7CP34_9BACT Putative uncharacterized protein OS=Opitutaceae bacterium TAV2
Align length 111
Score (bit) 36.2
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960103|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_H24, 5'
         (616 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7CP34|A7CP34_9BACT Putative uncharacterized protein OS=Opitu...    36   1.6  
tr|A6DDJ4|A6DDJ4_9PROT Imidazole glycerol phosphate synthase, gl...    35   2.7  
tr|A0RBM0|A0RBM0_BACAH Imidazole glycerol phosphate synthase sub...    34   7.7  
tr|Q4MSN4|Q4MSN4_BACCE Imidazole glycerol phosphate synthase, gl...    34   7.7  
tr|B7HKD2|B7HKD2_BACCE Imidazole glycerol phosphate synthase, gl...    34   7.7  
tr|B5VAY7|B5VAY7_BACCE Imidazole glycerol phosphate synthase, gl...    34   7.7  
tr|B3ZVW9|B3ZVW9_BACCE Imidazole glycerol phosphate synthase, gl...    34   7.7  
tr|B3ZGF0|B3ZGF0_BACCE Imidazole glycerol phosphate synthase, gl...    34   7.7  
tr|B3YX06|B3YX06_BACCE Imidazole glycerol phosphate synthase, gl...    34   7.7  
tr|B3J969|B3J969_BACAN Imidazole glycerol phosphate synthase, gl...    34   7.7  
tr|B1UPQ8|B1UPQ8_BACAN Imidazole glycerol phosphate synthase, gl...    34   7.7  
tr|B1GH92|B1GH92_BACAN Imidazole glycerol phosphate synthase, gl...    34   7.7  
tr|B1EXM4|B1EXM4_BACAN Imidazole glycerol phosphate synthase, gl...    34   7.7  
tr|B0QJ35|B0QJ35_BACAN Imidazole glycerol phosphate synthase, gl...    34   7.7  
tr|B0Q2G4|B0Q2G4_BACAN Imidazole glycerol phosphate synthase, gl...    34   7.7  
tr|B0AQK3|B0AQK3_BACAN Imidazole glycerol phosphate synthase, gl...    34   7.7  

>tr|A7CP34|A7CP34_9BACT Putative uncharacterized protein
           OS=Opitutaceae bacterium TAV2 GN=ObacDRAFT_0224 PE=4
           SV=1
          Length = 2708

 Score = 36.2 bits (82), Expect = 1.6
 Identities = 27/111 (24%), Positives = 49/111 (44%)
 Frame = +3

Query: 246 GETPTDENSYSEGVPIL*SEDGLPIYTGIFEEDVTCIFEEDQTMNLCIDIRKNLNSQRGT 425
           GE P D+++ +E   +   +DGLP+Y+G        I   ++T  L    R+ ++ Q   
Sbjct: 162 GEAPIDKSALAEVTTLADPDDGLPVYSG------QRIGPNEKTTKLRKGYRREVDGQAD- 214

Query: 426 IRRFDFASLIQSGQPNEVHKRFVKTLSTNISLERSSKVGSKSPNSNKSGVD 578
                  + I +  P E  ++     +  +S   S+KVG +  N    G+D
Sbjct: 215 ------GTAIVTDYPLEAFRKTADGSADLVSSALSAKVGQRIENGEGVGID 259


>tr|A6DDJ4|A6DDJ4_9PROT Imidazole glycerol phosphate synthase,
           glutamine amidotransferase subunit OS=Caminibacter
           mediatlanticus TB-2 GN=CMTB2_08970 PE=4 SV=1
          Length = 200

 Score = 35.4 bits (80), Expect = 2.7
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
 Frame = +3

Query: 153 IDDAFIYGLHSYGSTCDIAFIYGLYSYG----------STCGETPTDENSYSEGVPIL 296
           +D+ ++Y +HSY + CD  ++ G   YG          +  G  P  E S++EG+ IL
Sbjct: 137 LDNPYLYFVHSYHTVCDEKYVIGKTIYGYEFVSAVNKDNVFGLQPHPEKSHNEGLKIL 194


>tr|A0RBM0|A0RBM0_BACAH Imidazole glycerol phosphate synthase
           subunit hisH OS=Bacillus thuringiensis (strain Al Hakam)
           GN=BALH_1263 PE=4 SV=1
          Length = 209

 Score = 33.9 bits (76), Expect = 7.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 144 DGIIDDAFIYGLHSYGSTCDIAFIYGLYSYG 236
           +G+ D +F+Y +HSY + C    +YG+  YG
Sbjct: 132 NGVEDGSFVYYVHSYYADCPNEIVYGISDYG 162


>tr|Q4MSN4|Q4MSN4_BACCE Imidazole glycerol phosphate synthase,
           glutamine amidotransferase subunit OS=Bacillus cereus
           G9241 GN=hisH PE=4 SV=1
          Length = 209

 Score = 33.9 bits (76), Expect = 7.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 144 DGIIDDAFIYGLHSYGSTCDIAFIYGLYSYG 236
           +G+ D +F+Y +HSY + C    +YG+  YG
Sbjct: 132 NGVEDGSFVYYVHSYYADCPNEIVYGISEYG 162


>tr|B7HKD2|B7HKD2_BACCE Imidazole glycerol phosphate synthase,
           glutamine amidotransferase OS=Bacillus cereus AH187
           GN=hisH PE=4 SV=1
          Length = 209

 Score = 33.9 bits (76), Expect = 7.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 144 DGIIDDAFIYGLHSYGSTCDIAFIYGLYSYG 236
           +G+ D +F+Y +HSY + C    +YG+  YG
Sbjct: 132 NGVEDGSFVYYVHSYYADCPNEIVYGISEYG 162


>tr|B5VAY7|B5VAY7_BACCE Imidazole glycerol phosphate synthase,
           glutamine amidotransferase OS=Bacillus cereus H3081.97
           GN=hisH PE=4 SV=1
          Length = 209

 Score = 33.9 bits (76), Expect = 7.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 144 DGIIDDAFIYGLHSYGSTCDIAFIYGLYSYG 236
           +G+ D +F+Y +HSY + C    +YG+  YG
Sbjct: 132 NGVEDGSFVYYVHSYYADCPNEIVYGISEYG 162


>tr|B3ZVW9|B3ZVW9_BACCE Imidazole glycerol phosphate synthase,
           glutamine amidotransferase OS=Bacillus cereus 03BB108
           GN=hisH PE=4 SV=1
          Length = 209

 Score = 33.9 bits (76), Expect = 7.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 144 DGIIDDAFIYGLHSYGSTCDIAFIYGLYSYG 236
           +G+ D +F+Y +HSY + C    +YG+  YG
Sbjct: 132 NGVEDGSFVYYVHSYYADCPNEIVYGISDYG 162


>tr|B3ZGF0|B3ZGF0_BACCE Imidazole glycerol phosphate synthase,
           glutamine amidotransferase OS=Bacillus cereus NVH0597-99
           GN=hisH PE=4 SV=1
          Length = 209

 Score = 33.9 bits (76), Expect = 7.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 144 DGIIDDAFIYGLHSYGSTCDIAFIYGLYSYG 236
           +G+ D +F+Y +HSY + C    +YG+  YG
Sbjct: 132 NGVEDGSFVYYVHSYYADCPNEIVYGISDYG 162


>tr|B3YX06|B3YX06_BACCE Imidazole glycerol phosphate synthase,
           glutamine amidotransferase OS=Bacillus cereus W GN=hisH
           PE=4 SV=1
          Length = 209

 Score = 33.9 bits (76), Expect = 7.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 144 DGIIDDAFIYGLHSYGSTCDIAFIYGLYSYG 236
           +G+ D +F+Y +HSY + C    +YG+  YG
Sbjct: 132 NGVEDGSFVYYVHSYYADCPNEIVYGISDYG 162


>tr|B3J969|B3J969_BACAN Imidazole glycerol phosphate synthase,
           glutamine amidotransferase OS=Bacillus anthracis
           Tsiankovskii-I GN=hisH PE=4 SV=1
          Length = 209

 Score = 33.9 bits (76), Expect = 7.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 144 DGIIDDAFIYGLHSYGSTCDIAFIYGLYSYG 236
           +G+ D +F+Y +HSY + C    +YG+  YG
Sbjct: 132 NGVEDGSFVYYVHSYYADCPNEIVYGISDYG 162