DK960109 |
Clone id |
TST39A01NGRL0006_I07 |
Library |
TST39 |
Length |
670 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_I07. 5' end sequence. |
Accession |
DK960109 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL2946Contig1 |
Sequence |
CTCTACAGGCTCCCCATTGTCGTCCCCAGCATCTTGAGTTCCTCTATAAGGCCAAGCTCT CATGGGTTTCTCCCTCCCCGCTTCGAGCTGACTCCTCGCCACTCATGGCTGCATCCTCTG CCACTATGGTACCCTCATCCTCCTTCTCATCCGCCTTCTCCAACAGCATCGCCGCCGGCC ACACAGGTAAGATTGACCTCTCCTTCCTCTCTTCTTCATTCCGTGGCTTCTCTGTGTCGT CAAGGTCTCCATTCTTCCCTTTCCAATTGCATCGTCCGGGACCGTCCGCATTTGTTGTGG CGACCCTCGCCAATGAGGTCATCTCCCCAGAACGAGTCCAAGAAACCCTACCTGATGTCT TCGACTTCAAGGCCTACATGAAATCCAAGGCTGCTTCTGTGCATAAAGCCCTTGAGGAGT GCGTGCCAATGCGCTCCCCAGAGAGGATTCATGACTCCATGCGCTACTCCTTACTGGCTG GAGGAAAGCGGATAAGACCAGCGTTATGTATAGCCGCATGCGAGCTCTTTGGAGGGACGG AAGCCATGGCCATGCCCTCTGCATGTGCATTAGAGATGATTCATACAATGTCACTAATCC ATGATGACCTTCCCTGCATGGATAATGATGATCTCAGGCGCGGAAAGCCTACAAACCACA AGGTCTTTGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q42698 |
Definition |
sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus |
Align length |
119 |
Score (bit) |
181.0 |
E-value |
2.0e-45 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960109|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0006_I07, 5' (670 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthetase, c... 181 2e-45 sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthetase, c... 179 1e-44 sp|P34802|GGPP1_ARATH Geranylgeranyl pyrophosphate synthetase 1,... 174 3e-43 sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthetase, c... 169 9e-42 sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthetase, c... 161 3e-39 sp|O04046|GGPP2_ARATH Geranylgeranyl pyrophosphate synthetase 2 ... 160 7e-39 sp|Q9LUD9|GGPP3_ARATH Geranylgeranyl pyrophosphate synthetase 3,... 159 1e-38 sp|Q9SLG2|GGPP4_ARATH Geranylgeranyl pyrophosphate synthetase 4 ... 157 4e-38 sp|O22043|GGPP6_ARATH Geranylgeranyl pyrophosphate synthetase 6,... 137 4e-32 sp|P48368|CRTE_CYAPA Geranylgeranyl pyrophosphate synthetase hom... 135 1e-31 sp|Q39108|GGR_ARATH Geranylgeranyl pyrophosphate synthase-relate... 128 2e-29 sp|Q08291|ISPA_BACST Geranyltranstransferase OS=Bacillus stearot... 109 2e-23 sp|P54383|ISPA_BACSU Geranyltranstransferase OS=Bacillus subtili... 108 3e-23 sp|O66126|ISPA_MICLU Geranyltranstransferase OS=Micrococcus lute... 97 1e-19 sp|O66952|ISPA_AQUAE Geranyltranstransferase OS=Aquifex aeolicus... 85 4e-16 sp|Q53479|IDSA_METTM Bifunctional short chain isoprenyl diphosph... 80 1e-14 sp|P45204|ISPA_HAEIN Geranyltranstransferase OS=Haemophilus infl... 77 6e-14 sp|P22939|ISPA_ECOLI Geranyltranstransferase OS=Escherichia coli... 76 1e-13 sp|P54976|CRTE_RHOS4 Geranylgeranyl pyrophosphate synthetase OS=... 74 9e-13 sp|P22873|CRTE_ESCVU Geranylgeranyl pyrophosphate synthetase OS=... 74 9e-13 sp|Q45220|ISPA_BRAJA Probable geranyltranstransferase OS=Bradyrh... 73 2e-12 sp|P55539|ISPA_RHISN Probable geranyltranstransferase OS=Rhizobi... 72 2e-12 sp|O26156|IDSA_METTH Bifunctional short chain isoprenyl diphosph... 71 6e-12 sp|Q58270|IDSA_METJA Bifunctional short chain isoprenyl diphosph... 71 6e-12 sp|Q8K9A0|ISPA_BUCAP Geranyltranstransferase OS=Buchnera aphidic... 69 2e-11 sp|P17060|CRTE_RHOCA Geranylgeranyl pyrophosphate synthetase OS=... 69 2e-11 sp|P21684|CRTE_PANAN Geranylgeranyl pyrophosphate synthetase OS=... 67 7e-11 sp|P95999|GGPS_SULSO Geranylgeranyl pyrophosphate synthetase OS=... 66 1e-10 sp|P39464|GGPS_SULAC Geranylgeranyl pyrophosphate synthetase OS=... 66 1e-10 sp|P57537|ISPA_BUCAI Geranyltranstransferase OS=Buchnera aphidic... 66 2e-10
>sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1 Length = 357
Score = 181 bits (460), Expect = 2e-45 Identities = 88/119 (73%), Positives = 101/119 (84%) Frame = +3
Query: 312 NEVISPERVQETLPDVFDFKAYMKSKAASVHKALEECVPMRSPERIHDSMRYSLLAGGKR 491 +E S + V + FDFKAYM KA SV+KALE+ V +R P +IH+SMRYSLLAGGKR Sbjct: 48 SESKSKKEVAFSSSSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKR 107
Query: 492 IRPALCIAACELFGGTEAMAMPSACALEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVF 668 +RP LCIAACELFGGTE++AMPSACA+EMIHTMSL+HDDLPCMDNDDLRRGKPTNHKVF Sbjct: 108 VRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKVF 166
>sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1 Length = 370
Score = 179 bits (454), Expect = 1e-44 Identities = 85/132 (64%), Positives = 102/132 (77%) Frame = +3
Query: 273 RPGPSAFVVATLANEVISPERVQETLPDVFDFKAYMKSKAASVHKALEECVPMRSPERIH 452 RP S + T E + E Q P FDFK+YM K S+++ALE +P++ P +IH Sbjct: 50 RPISSVSAIITKEEETLQEE--QNNPPPSFDFKSYMLQKGNSINQALEAAIPLQEPAKIH 107
Query: 453 DSMRYSLLAGGKRIRPALCIAACELFGGTEAMAMPSACALEMIHTMSLIHDDLPCMDNDD 632 +SMRYSLLAGGKR+RPALC+AACEL GG ++MAMP+ACA+EMIHTMSLIHDDLPCMDNDD Sbjct: 108 ESMRYSLLAGGKRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDD 167
Query: 633 LRRGKPTNHKVF 668 LRRGKPTNH VF Sbjct: 168 LRRGKPTNHIVF 179
>sp|P34802|GGPP1_ARATH Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2 Length = 371
Score = 174 bits (442), Expect = 3e-43 Identities = 80/117 (68%), Positives = 98/117 (83%) Frame = +3
Query: 318 VISPERVQETLPDVFDFKAYMKSKAASVHKALEECVPMRSPERIHDSMRYSLLAGGKRIR 497 V + ++++ P FDF +Y+ +KA V+KAL+ VP+R P +IH++MRYSLLAGGKR+R Sbjct: 60 VTKEDNLRQSEPSSFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVR 119
Query: 498 PALCIAACELFGGTEAMAMPSACALEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVF 668 P LCIAACEL GG E+ AMP+ACA+EMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVF Sbjct: 120 PVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVF 176
>sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1 Length = 366
Score = 169 bits (429), Expect = 9e-42 Identities = 77/103 (74%), Positives = 91/103 (88%) Frame = +3
Query: 360 FDFKAYMKSKAASVHKALEECVPMRSPERIHDSMRYSLLAGGKRIRPALCIAACELFGGT 539 FDF +Y+ KA SV+KAL+ VP+R P +IH++MRYSLLAGGKR+RP LCIAACEL GG Sbjct: 70 FDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGE 129
Query: 540 EAMAMPSACALEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVF 668 E++AMP+ CA+EMIHTMSLIHDDLPCMDNDDLRRGKPTNHKV+ Sbjct: 130 ESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVY 172
>sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1 Length = 369
Score = 161 bits (407), Expect = 3e-39 Identities = 76/125 (60%), Positives = 96/125 (76%) Frame = +3
Query: 294 VVATLANEVISPERVQETLPDVFDFKAYMKSKAASVHKALEECVPMRSPERIHDSMRYSL 473 + T +E I + +E F+FK Y+ KA SV+KAL+E + ++ P IH++MRYSL Sbjct: 58 IATTKEDERIEAAQTEEP----FNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSL 113
Query: 474 LAGGKRIRPALCIAACELFGGTEAMAMPSACALEMIHTMSLIHDDLPCMDNDDLRRGKPT 653 LAGGKR+RP LC+AACEL GG + AM +ACA+EMIHTMSLIHDDLPCMDNDDLRRGKPT Sbjct: 114 LAGGKRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPT 173
Query: 654 NHKVF 668 NHK++ Sbjct: 174 NHKIY 178
>sp|O04046|GGPP2_ARATH Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2 Length = 376
Score = 160 bits (404), Expect = 7e-39 Identities = 79/141 (56%), Positives = 101/141 (71%), Gaps = 7/141 (4%) Frame = +3
Query: 267 LHRPGPSAFVVATLANEVISPERVQETLPDV-------FDFKAYMKSKAASVHKALEECV 425 L R +AF+ + + + ER +E + F+F YM SKA SV+KALEE + Sbjct: 45 LSRKEVAAFLDSPIVEDEEGEEREEEEEGGIVSNANFTFEFDPYMMSKAESVNKALEEAI 104
Query: 426 PMRSPERIHDSMRYSLLAGGKRIRPALCIAACELFGGTEAMAMPSACALEMIHTMSLIHD 605 P+ P +IH++MRY++LA GKR+RP LC+A+CEL GG E AMP+ACA+EMIHTMSLI D Sbjct: 105 PVGEPLKIHEAMRYAILAAGKRVRPILCLASCELVGGQENAAMPAACAVEMIHTMSLIKD 164
Query: 606 DLPCMDNDDLRRGKPTNHKVF 668 DLPCMDNDDLRRGKPT HKV+ Sbjct: 165 DLPCMDNDDLRRGKPTTHKVY 185
>sp|Q9LUD9|GGPP3_ARATH Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1 Length = 360
Score = 159 bits (403), Expect = 1e-38 Identities = 78/129 (60%), Positives = 94/129 (72%) Frame = +3
Query: 282 PSAFVVATLANEVISPERVQETLPDVFDFKAYMKSKAASVHKALEECVPMRSPERIHDSM 461 PS+ + + ++I PE FDFK YM KA SV+ AL+ VP+R P + +++ Sbjct: 38 PSSALTSQGGRDMIPPEGKCNDHNSAFDFKLYMIRKAESVNAALDVSVPLREPLTVQEAV 97
Query: 462 RYSLLAGGKRIRPALCIAACELFGGTEAMAMPSACALEMIHTMSLIHDDLPCMDNDDLRR 641 RYSLLAGGKR+RP LCIA CEL GG EA AM +ACA+EMIHT SLIHDDLPCMDN DLRR Sbjct: 98 RYSLLAGGKRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRR 157
Query: 642 GKPTNHKVF 668 GKPTNHKV+ Sbjct: 158 GKPTNHKVY 166
>sp|Q9SLG2|GGPP4_ARATH Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1 Length = 372
Score = 157 bits (398), Expect = 4e-38 Identities = 71/103 (68%), Positives = 87/103 (84%) Frame = +3
Query: 360 FDFKAYMKSKAASVHKALEECVPMRSPERIHDSMRYSLLAGGKRIRPALCIAACELFGGT 539 FDFK YM SKA ++++AL+E +P+ P IH +MRY++LAGGKR+RP LC+AACEL GG Sbjct: 79 FDFKPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGE 138
Query: 540 EAMAMPSACALEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVF 668 E +A+ +ACA+EMIHTMSLI DDLPCMDNDDLRRGKPT HKVF Sbjct: 139 ERLAIQAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVF 181
>sp|O22043|GGPP6_ARATH Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2 Length = 336
Score = 137 bits (346), Expect = 4e-32 Identities = 65/110 (59%), Positives = 82/110 (74%), Gaps = 8/110 (7%) Frame = +3
Query: 363 DFKAYMKSKAASVHKALEECVPM--------RSPERIHDSMRYSLLAGGKRIRPALCIAA 518 +F +YMK+KA S++KAL+ +P+ +H +MRY+LL GGKR+RP LC+ A Sbjct: 31 EFISYMKNKAKSINKALDNSIPLCNNFVPLWEPVLEVHKAMRYTLLPGGKRVRPMLCLVA 90
Query: 519 CELFGGTEAMAMPSACALEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVF 668 CEL GG E+ AMP+ACA+EMIH SLI DDLPCMD+D LRRGKPTNHKVF Sbjct: 91 CELVGGQESTAMPAACAVEMIHAASLILDDLPCMDDDSLRRGKPTNHKVF 140
>sp|P48368|CRTE_CYAPA Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1 Length = 300
Score = 135 bits (341), Expect = 1e-31 Identities = 63/103 (61%), Positives = 77/103 (74%) Frame = +3
Query: 360 FDFKAYMKSKAASVHKALEECVPMRSPERIHDSMRYSLLAGGKRIRPALCIAACELFGGT 539 F+ Y+ + V L + +P +P I+DS+RYSL AGGKRIRP LC+A+CEL GGT Sbjct: 8 FNLLTYLYERKEIVEDTLNKSIPRGNPTFIYDSIRYSLSAGGKRIRPILCLASCELAGGT 67
Query: 540 EAMAMPSACALEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVF 668 MA+P+ACALEMIHTMSLIHDDLP MDND RRGKPTNH ++ Sbjct: 68 MEMALPTACALEMIHTMSLIHDDLPAMDNDSYRRGKPTNHIIY 110
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q8W1R9 |
Definition |
tr|Q8W1R9|Q8W1R9_ABIGR Geranylgeranyl diphosphate synthase OS=Abies grandis |
Align length |
122 |
Score (bit) |
184.0 |
E-value |
6.0e-45 |
Report |
 |