DK960119 |
Clone id |
TST39A01NGRL0006_I20 |
Library |
TST39 |
Length |
630 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_I20. 5' end sequence. |
Accession |
DK960119 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1404Contig1 |
Sequence |
TCATCTGATAACATCATCAGCATATCAGGGGTGGTTTCAGATAATGTCGTTCACTCTTTC CTTCAAGCATGCAGAACAGGACTGTTTGATCAGGCTCAGAAAGCCGTAGCTGACTGCACA TCTTATTGCTACCTCGATTCACAAATACTCTCACAGCTCTATGATGTGGTTGTACCTGAT GAGGAACTTTCAGATACCCAAAAGGCTCAGATTTGTGAAAGAATTGCACAAGCTGACAAA TGCCTAATTGATGGTGCAGACGAGTACTTGCAAATGCTTGATGTGGCTAGTGGTACCATG CGGTCTTTCTGTAATATGCCACAAGACTCTACTTTCGTATGACTACCTGGTATAAATGTG TGCAGCAGGATGGTCTACTTGTTTCCCCTGAATCAAGGGTGGTAAGATAATCAGTGTTTA ATGCTTGTGCAGAAGCTTGAGGTTTTCTAGTTCTTATGATTTTGAAATTAGGGCCCAGGT AGAACAGCTAAACTCATGCCCAAGGTTGGGTCTACTGTTGACGAGACAGTTCATGTTACC GTGATCCTAAAAGTTCATATGCTCCCAGATGTTGAAAATTTTCAGGTGCAGCGGGTAATT ATGTTACTTATTTTTTAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q99J62 |
Definition |
sp|Q99J62|RFC4_MOUSE Replication factor C subunit 4 OS=Mus musculus |
Align length |
101 |
Score (bit) |
79.3 |
E-value |
1.0e-14 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NSN9 |
Definition |
tr|A9NSN9|A9NSN9_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
112 |
Score (bit) |
132.0 |
E-value |
2.0e-29 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960119|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0006_I20, 5' (616 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NSN9|A9NSN9_PICSI Putative uncharacterized protein OS=Picea... 132 2e-29 tr|A9SMZ4|A9SMZ4_PHYPA Predicted protein OS=Physcomitrella paten... 125 2e-27 tr|A7NVH0|A7NVH0_VITVI Chromosome chr18 scaffold_1, whole genome... 123 8e-27 tr|A5BRZ3|A5BRZ3_VITVI Putative uncharacterized protein OS=Vitis... 123 8e-27 tr|B4FQT5|B4FQT5_MAIZE Putative uncharacterized protein OS=Zea m... 119 1e-25 tr|B6T4T0|B6T4T0_MAIZE Replication factor C subunit 2 OS=Zea may... 118 3e-25 tr|B7FK39|B7FK39_MEDTR Putative uncharacterized protein OS=Medic... 117 7e-25 tr|Q9FXM3|Q9FXM3_ORYSJ cDNA clone:J033138A02, full insert sequen... 115 3e-24 tr|Q0IPQ0|Q0IPQ0_ORYSJ Os12g0176500 protein (Fragment) OS=Oryza ... 115 3e-24 tr|A2ZIL4|A2ZIL4_ORYSI Putative uncharacterized protein OS=Oryza... 115 3e-24 tr|Q93ZX1|Q93ZX1_ARATH Putative replication factor (At1g21690) (... 100 1e-19 tr|Q3ED76|Q3ED76_ARATH Uncharacterized protein At1g21690.2 OS=Ar... 100 1e-19 tr|Q9XI09|Q9XI09_ARATH F8K7.11 protein OS=Arabidopsis thaliana G... 91 5e-17 tr|Q6DRF4|Q6DRF4_DANRE Replication factor C subunit RFC4 OS=Dani... 89 2e-16 tr|A7S5R5|A7S5R5_NEMVE Predicted protein OS=Nematostella vectens... 89 2e-16 tr|B6NXS8|B6NXS8_BRAFL Putative uncharacterized protein OS=Branc... 85 4e-15 tr|B5X7D2|B5X7D2_SALSA Replication factor C subunit 4 OS=Salmo s... 84 5e-15 tr|B6P218|B6P218_BRAFL Putative uncharacterized protein OS=Branc... 84 9e-15 tr|B3RUC9|B3RUC9_TRIAD Putative uncharacterized protein OS=Trich... 82 2e-14 tr|B4F778|B4F778_RAT Rfc4 protein (Replication factor C (Activat... 82 3e-14 tr|Q5ZHL1|Q5ZHL1_CHICK Putative uncharacterized protein OS=Gallu... 81 4e-14 tr|Q76LD2|Q76LD2_XENLA Replication factor C p37 subunit (RFC2 pr... 80 1e-13 tr|Q28GP1|Q28GP1_XENTR Replication factor C (Activator 1) 4, 37k... 79 3e-13 tr|Q4SDY0|Q4SDY0_TETNG Chromosome undetermined SCAF14628, whole ... 76 1e-12 tr|B7QHT5|B7QHT5_IXOSC Replication factor C, subunit RFC4, putat... 69 2e-10 tr|Q29G67|Q29G67_DROPS GA20846 OS=Drosophila pseudoobscura pseud... 69 3e-10 tr|B4GW04|B4GW04_DROPE GL14564 OS=Drosophila persimilis GN=GL145... 69 3e-10 tr|B6JX85|B6JX85_SCHJP Replication factor C subunit 2 OS=Schizos... 67 6e-10 tr|B3MQX5|B3MQX5_DROAN GF21175 OS=Drosophila ananassae GN=GF2117... 67 8e-10 tr|A7EGJ1|A7EGJ1_SCLS1 Putative uncharacterized protein OS=Scler... 67 8e-10
>tr|A9NSN9|A9NSN9_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 339
Score = 132 bits (332), Expect = 2e-29 Identities = 66/112 (58%), Positives = 84/112 (75%) Frame = +1
Query: 1 SSDNIISISGVVSDNVVHSFLQACRTGLFDQAQKAVADCTSYCYLDSQILSQLYDVVVPD 180 SS+N+IS+SG+V VV S QAC+TG FD AQK V+D + + SQI SQLYD+VV Sbjct: 228 SSNNLISVSGIVPKEVVQSLYQACKTGQFDLAQKEVSDIIAEGHPASQIFSQLYDMVVQA 287
Query: 181 EELSDTQKAQICERIAQADKCLIDGADEYLQMLDVASGTMRSFCNMPQDSTF 336 ++SD KA+I +R+A+ADKCLIDGADEYLQ+LDVAS MRS CNM Q+ + Sbjct: 288 TDISDETKARISQRLAEADKCLIDGADEYLQLLDVASNAMRSLCNMTQECCY 339
>tr|A9SMZ4|A9SMZ4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_186629 PE=4 SV=1 Length = 338
Score = 125 bits (315), Expect = 2e-27 Identities = 62/112 (55%), Positives = 82/112 (73%) Frame = +1
Query: 1 SSDNIISISGVVSDNVVHSFLQACRTGLFDQAQKAVADCTSYCYLDSQILSQLYDVVVPD 180 SS IIS+SG+V D+V+ L+AC++G FD A + V D + + SQILSQL+D VV Sbjct: 227 SSKEIISVSGIVPDSVLEGLLKACQSGQFDLAHQEVRDIIAEGHPVSQILSQLFDFVVQS 286
Query: 181 EELSDTQKAQICERIAQADKCLIDGADEYLQMLDVASGTMRSFCNMPQDSTF 336 +SD QKA+I ER+A+ DKCLIDGADEYLQ++DVAS TMR+ CN Q+ T+ Sbjct: 287 PNISDIQKARITERLAETDKCLIDGADEYLQLMDVASNTMRALCNQTQECTY 338
>tr|A7NVH0|A7NVH0_VITVI Chromosome chr18 scaffold_1, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00015431001 PE=4 SV=1 Length = 341
Score = 123 bits (309), Expect = 8e-27 Identities = 61/109 (55%), Positives = 84/109 (77%) Frame = +1
Query: 1 SSDNIISISGVVSDNVVHSFLQACRTGLFDQAQKAVADCTSYCYLDSQILSQLYDVVVPD 180 SS ++IS+SGVV +VV + AC++G FD A K V + + Y SQ+L QL+DVVV + Sbjct: 229 SSKDLISVSGVVPQHVVQALFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVV-E 287
Query: 181 EELSDTQKAQICERIAQADKCLIDGADEYLQMLDVASGTMRSFCNMPQD 327 ++SD QKA+IC+R+A+ADKCL+DGADEYLQ+LDVAS MR+ CNMP++ Sbjct: 288 ADISDEQKARICKRLAEADKCLVDGADEYLQLLDVASNAMRALCNMPEE 336
>tr|A5BRZ3|A5BRZ3_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019805 PE=4 SV=1 Length = 341
Score = 123 bits (309), Expect = 8e-27 Identities = 61/109 (55%), Positives = 84/109 (77%) Frame = +1
Query: 1 SSDNIISISGVVSDNVVHSFLQACRTGLFDQAQKAVADCTSYCYLDSQILSQLYDVVVPD 180 SS ++IS+SGVV +VV + AC++G FD A K V + + Y SQ+L QL+DVVV + Sbjct: 229 SSKDLISVSGVVPQHVVQALFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVV-E 287
Query: 181 EELSDTQKAQICERIAQADKCLIDGADEYLQMLDVASGTMRSFCNMPQD 327 ++SD QKA+IC+R+A+ADKCL+DGADEYLQ+LDVAS MR+ CNMP++ Sbjct: 288 ADISDEQKARICKRLAEADKCLVDGADEYLQLLDVASNAMRALCNMPEE 336
>tr|B4FQT5|B4FQT5_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 339
Score = 119 bits (298), Expect = 1e-25 Identities = 57/112 (50%), Positives = 82/112 (73%) Frame = +1
Query: 1 SSDNIISISGVVSDNVVHSFLQACRTGLFDQAQKAVADCTSYCYLDSQILSQLYDVVVPD 180 SS ++IS+SGV+ ++VV S L ACR+G FD A K V+ + Y SQ+++Q DV+V Sbjct: 228 SSSDLISVSGVIPEDVVKSLLAACRSGEFDVANKEVSSIIADGYPVSQLMAQFLDVIVSA 287
Query: 181 EELSDTQKAQICERIAQADKCLIDGADEYLQMLDVASGTMRSFCNMPQDSTF 336 +++ D QKA+IC+++ + DKCL+DGADEYLQ+LDVAS T+RS NMP+ F Sbjct: 288 DDIPDDQKARICKKLGETDKCLVDGADEYLQLLDVASETIRSLFNMPRTLVF 339
>tr|B6T4T0|B6T4T0_MAIZE Replication factor C subunit 2 OS=Zea mays PE=2 SV=1 Length = 339
Score = 118 bits (295), Expect = 3e-25 Identities = 56/112 (50%), Positives = 82/112 (73%) Frame = +1
Query: 1 SSDNIISISGVVSDNVVHSFLQACRTGLFDQAQKAVADCTSYCYLDSQILSQLYDVVVPD 180 SS ++IS+SGV+ ++VV S L ACR+G FD A K V+ + Y SQ+++Q DV+V Sbjct: 228 SSSDLISVSGVIPEDVVKSLLAACRSGEFDVANKEVSSIIADGYPVSQLMAQFLDVIVSA 287
Query: 181 EELSDTQKAQICERIAQADKCLIDGADEYLQMLDVASGTMRSFCNMPQDSTF 336 +++ D QKA+IC+++ + DKCL+DGADEYLQ+LDVAS T+R+ NMP+ F Sbjct: 288 DDIPDDQKARICKKLGETDKCLVDGADEYLQLLDVASETIRALFNMPRTLVF 339
>tr|B7FK39|B7FK39_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 339
Score = 117 bits (292), Expect = 7e-25 Identities = 54/108 (50%), Positives = 82/108 (75%) Frame = +1
Query: 1 SSDNIISISGVVSDNVVHSFLQACRTGLFDQAQKAVADCTSYCYLDSQILSQLYDVVVPD 180 SS ++IS+SG+V VV + L+ACR+G FD A K V + + Y SQ+L+QL++ +V + Sbjct: 229 SSKDLISVSGIVPAEVVEALLKACRSGNFDLANKEVNNFIAEGYPVSQMLTQLFEAIVEE 288
Query: 181 EELSDTQKAQICERIAQADKCLIDGADEYLQMLDVASGTMRSFCNMPQ 324 ++SD QKA+I +++ +ADKCL+DGADEYLQ+LDV S T+++ CNMP+ Sbjct: 289 NDISDEQKARISKKLGEADKCLVDGADEYLQLLDVVSNTIQALCNMPE 336
>tr|Q9FXM3|Q9FXM3_ORYSJ cDNA clone:J033138A02, full insert sequence OS=Oryza sativa subsp. japonica GN=OsRFC2 PE=2 SV=1 Length = 339
Score = 115 bits (287), Expect = 3e-24 Identities = 55/112 (49%), Positives = 82/112 (73%) Frame = +1
Query: 1 SSDNIISISGVVSDNVVHSFLQACRTGLFDQAQKAVADCTSYCYLDSQILSQLYDVVVPD 180 SS ++IS+SG + ++VV S L +C++G FD A K V + + Y SQ++SQ DV+V Sbjct: 228 SSTDLISVSGAIPEDVVKSLLASCKSGEFDVANKEVNNIIADGYPVSQLISQFLDVIVNA 287
Query: 181 EELSDTQKAQICERIAQADKCLIDGADEYLQMLDVASGTMRSFCNMPQDSTF 336 +++ D QKA+IC+++ +ADKCL+DGADEYLQ+LDVAS T+R+ +MPQ F Sbjct: 288 DDIPDEQKARICKKLGEADKCLVDGADEYLQLLDVASETIRALFDMPQTLVF 339
>tr|Q0IPQ0|Q0IPQ0_ORYSJ Os12g0176500 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os12g0176500 PE=4 SV=1 Length = 379
Score = 115 bits (287), Expect = 3e-24 Identities = 55/112 (49%), Positives = 82/112 (73%) Frame = +1
Query: 1 SSDNIISISGVVSDNVVHSFLQACRTGLFDQAQKAVADCTSYCYLDSQILSQLYDVVVPD 180 SS ++IS+SG + ++VV S L +C++G FD A K V + + Y SQ++SQ DV+V Sbjct: 268 SSTDLISVSGAIPEDVVKSLLASCKSGEFDVANKEVNNIIADGYPVSQLISQFLDVIVNA 327
Query: 181 EELSDTQKAQICERIAQADKCLIDGADEYLQMLDVASGTMRSFCNMPQDSTF 336 +++ D QKA+IC+++ +ADKCL+DGADEYLQ+LDVAS T+R+ +MPQ F Sbjct: 328 DDIPDEQKARICKKLGEADKCLVDGADEYLQLLDVASETIRALFDMPQTLVF 379
>tr|A2ZIL4|A2ZIL4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_37665 PE=4 SV=1 Length = 339
Score = 115 bits (287), Expect = 3e-24 Identities = 55/112 (49%), Positives = 82/112 (73%) Frame = +1
Query: 1 SSDNIISISGVVSDNVVHSFLQACRTGLFDQAQKAVADCTSYCYLDSQILSQLYDVVVPD 180 SS ++IS+SG + ++VV S L +C++G FD A K V + + Y SQ++SQ DV+V Sbjct: 228 SSTDLISVSGAIPEDVVKSLLASCKSGEFDVANKEVNNIIADGYPVSQLISQFLDVIVNA 287
Query: 181 EELSDTQKAQICERIAQADKCLIDGADEYLQMLDVASGTMRSFCNMPQDSTF 336 +++ D QKA+IC+++ +ADKCL+DGADEYLQ+LDVAS T+R+ +MPQ F Sbjct: 288 DDIPDEQKARICKKLGEADKCLVDGADEYLQLLDVASETIRALFDMPQTLVF 339
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