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NBDC - LSDB Archive
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DK960131
Clone id TST39A01NGRL0006_J09
Library
Length 471
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_J09. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AGGGAGAGTGATTGTACGCAGTATTCAGTATGGCCATCTCCAGAGCCGCTTCCTCGGCAG
TTGTCGCTCCTAACTGCGCCCCCGCGGAGAGCTTGGCAAAGAGCTTCTCTGGTCTCAAGG
CCACTACCCTGTTCGCCCCCAAGAGCCCCAGACCCGCTCGCCATCTCTAATGGGAGCCGT
GTGAGCGCCAGTGCTATGTGTGGAAGCCGTAGGACAACCAGAAGTTCGAGACTCTGTCCT
AATTGCCGCCGTTGTCAAGTGAGCAGATAGCGAATCAGGAGGACTTCATGGTCAGAAAAG
GCTGGACCCCTTGCATTGAGTGCGACAAAAACGAGAGCGTGTAACGAGAGCACTTCCACG
GCTGCGGCTACTACCATGGGCGGTACTGGGTGATGTGGAAGCTGCGCATGTGTGGCTGCC
AAGATGCCGCTGCTGTGCTGCGTGAAATTGCAGAGTGCGCCCAGGAGTATC
■■Homology search results ■■ -
sp_hit_id O64416
Definition sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea
Align length 91
Score (bit) 112.0
E-value 1.0e-24
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960131|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_J09, 5'
         (471 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   112   1e-24
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   112   1e-24
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   111   1e-24
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   110   3e-24
sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha...   109   7e-24
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   107   3e-23
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha...   107   3e-23
sp|O22077|RBS_FAGCR Ribulose bisphosphate carboxylase small chai...   106   6e-23
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   106   6e-23
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   105   8e-23
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   105   1e-22
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   103   3e-22
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   103   3e-22
sp|P29684|RBS_HEVBR Ribulose bisphosphate carboxylase small chai...   103   3e-22
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   103   3e-22
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai...   103   5e-22
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   102   6e-22
sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small cha...   102   6e-22
sp|P08475|RBS2_CHLRE Ribulose bisphosphate carboxylase small cha...   102   6e-22
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   102   8e-22
sp|P00873|RBS1_CHLRE Ribulose bisphosphate carboxylase small cha...   102   1e-21
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   102   1e-21
sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai...   101   1e-21
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   101   1e-21
sp|P26573|RBS8_NICPL Ribulose bisphosphate carboxylase small cha...   101   1e-21
sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small cha...   101   1e-21
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   101   1e-21
sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha...   101   1e-21
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   101   1e-21
sp|Q42915|RBS_MANES Ribulose bisphosphate carboxylase small chai...   101   2e-21

>sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1
          Length = 180

 Score =  112 bits (279), Expect = 1e-24
 Identities = 52/91 (57%), Positives = 64/91 (70%)
 Frame = +3

Query: 198 VWKP*DNQKFETLS*LPPLSSEQIANQEDFMVRKGWTPCIECDKNESV*REHFHGCGYYH 377
           VW+P +N KFETLS LPPLS + +A Q D++++ GW PCIE D   +V RE     GYY 
Sbjct: 61  VWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQGTVTREGSTMPGYYD 120

Query: 378 GRYWVMWKLRMCGCQDAAAVLREIAECAQEY 470
           GRYW MWKL M GC D+A+VLREI EC + Y
Sbjct: 121 GRYWTMWKLPMFGCTDSASVLREIEECKKLY 151


>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  112 bits (279), Expect = 1e-24
 Identities = 59/131 (45%), Positives = 77/131 (58%), Gaps = 4/131 (3%)
 Frame = +3

Query: 90  SLAKSFSGLKATTLF--APKSPRPARHL*WEPCERQCY-VWKP*DNQKFETLS*LPPLSS 260
           SLA  F+GLK+   F    K+      L       QC  VW P   +K+ETLS LPPLS 
Sbjct: 21  SLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSD 80

Query: 261 EQIANQEDFMVRKGWTPCIECDKNES-V*REHFHGCGYYHGRYWVMWKLRMCGCQDAAAV 437
           E ++ + D+++R  W PC+E +     V REH H  GYY GRYW MWKL M GC D+A V
Sbjct: 81  EALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQV 140

Query: 438 LREIAECAQEY 470
           ++E+ EC +EY
Sbjct: 141 MKEVGECKKEY 151


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
           SV=1
          Length = 178

 Score =  111 bits (278), Expect = 1e-24
 Identities = 61/138 (44%), Positives = 82/138 (59%), Gaps = 7/138 (5%)
 Frame = +3

Query: 78  APAES-LAKSFSGLKA------TTLFAPKSPRPARHL*WEPCERQCYVWKP*DNQKFETL 236
           +PA+S +   F+GL +      T  FA  S  P+  L      R   VW P   +KFETL
Sbjct: 16  SPAQSNMVVPFAGLHSSAAFPVTRKFADSSKLPSNGL----RVRCMQVWPPEGKKKFETL 71

Query: 237 S*LPPLSSEQIANQEDFMVRKGWTPCIECDKNESV*REHFHGCGYYHGRYWVMWKLRMCG 416
           S LPPL+ EQ+  + D+++R GW PCIE  K   V RE+ +  GYY GRYW MWKL M G
Sbjct: 72  SYLPPLTREQLGQEVDYLIRNGWIPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFG 131

Query: 417 CQDAAAVLREIAECAQEY 470
           C D++ VL+E+ EC++ Y
Sbjct: 132 CTDSSQVLKEVDECSKAY 149


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
          Length = 171

 Score =  110 bits (275), Expect = 3e-24
 Identities = 56/138 (40%), Positives = 77/138 (55%), Gaps = 7/138 (5%)
 Frame = +3

Query: 78  APAESLAKSFSGLKATTLFAPKSPRPARHL*WEPCE-------RQCYVWKP*DNQKFETL 236
           A A ++  +F+GLK+T  F            WE          R   VW P  N KFETL
Sbjct: 7   AGAATVVSAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETL 66

Query: 237 S*LPPLSSEQIANQEDFMVRKGWTPCIECDKNESV*REHFHGCGYYHGRYWVMWKLRMCG 416
           S LP L+ EQ+  + ++++R  W PC+E D   S+ R++    GYY GRYWVMWKL M G
Sbjct: 67  SYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFG 126

Query: 417 CQDAAAVLREIAECAQEY 470
           C +A+ V+ E+ ECA+ Y
Sbjct: 127 CTEASQVINEVRECAKAY 144


>sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small chain
           1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2
           SV=1
          Length = 179

 Score =  109 bits (272), Expect = 7e-24
 Identities = 63/136 (46%), Positives = 81/136 (59%), Gaps = 5/136 (3%)
 Frame = +3

Query: 78  APAE-SLAKSFSGLKATTLFAPKSPRPARHL*WEPCER---QCY-VWKP*DNQKFETLS* 242
           APA+ S+   F GLK+T+ F P + +PA  L   P      QC  VW     +KFETLS 
Sbjct: 18  APAQASMVAPFVGLKSTSAF-PVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSY 76

Query: 243 LPPLSSEQIANQEDFMVRKGWTPCIECDKNESV*REHFHGCGYYHGRYWVMWKLRMCGCQ 422
           LP LS E +  Q ++++R GW PC+E      V R++    GYY GRYW MWKL M GC 
Sbjct: 77  LPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCT 136

Query: 423 DAAAVLREIAECAQEY 470
           DAA V++E AEC +EY
Sbjct: 137 DAAQVVKEAAECKKEY 152


>sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1
          Length = 178

 Score =  107 bits (267), Expect = 3e-23
 Identities = 59/135 (43%), Positives = 80/135 (59%), Gaps = 4/135 (2%)
 Frame = +3

Query: 78  APAES-LAKSFSGLKATTLF-APKSPRPARHL*WEPCERQCY-VWKP*DNQKFETLS*LP 248
           APA++ +   F+GLK+   F   K       L       QC  VW P   +K+ETLS LP
Sbjct: 15  APAQANMVAPFTGLKSNAAFPTTKKANDFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLP 74

Query: 249 PLSSEQIANQEDFMVRKGWTPCIECDKNES-V*REHFHGCGYYHGRYWVMWKLRMCGCQD 425
           PL+  Q+A + D+++RK W PC+E +     V RE+    GYY GRYW MWKL M GC D
Sbjct: 75  PLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTD 134

Query: 426 AAAVLREIAECAQEY 470
           +A V++E+AEC +EY
Sbjct: 135 SAQVMKELAECKKEY 149


>sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small chain
           3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2
           SV=1
          Length = 179

 Score =  107 bits (267), Expect = 3e-23
 Identities = 62/136 (45%), Positives = 80/136 (58%), Gaps = 5/136 (3%)
 Frame = +3

Query: 78  APAE-SLAKSFSGLKATTLFAPKSPRPARHL*WEPCER---QCY-VWKP*DNQKFETLS* 242
           APA+ S+   F GLK+ + F P + +PA  L   P      QC  VW     +KFETLS 
Sbjct: 18  APAQASMVAPFVGLKSASAF-PVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSY 76

Query: 243 LPPLSSEQIANQEDFMVRKGWTPCIECDKNESV*REHFHGCGYYHGRYWVMWKLRMCGCQ 422
           LP LS E +  Q ++++R GW PC+E      V R++    GYY GRYW MWKL M GC 
Sbjct: 77  LPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCT 136

Query: 423 DAAAVLREIAECAQEY 470
           DAA V++E AEC +EY
Sbjct: 137 DAAQVVKEAAECKKEY 152


>sp|O22077|RBS_FAGCR Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  106 bits (264), Expect = 6e-23
 Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 5/135 (3%)
 Frame = +3

Query: 81  PAES-LAKSFSGLKATTLFAP--KSPRPARHL*WEPCERQCY-VWKP*DNQKFETLS*LP 248
           PA++ +   F+GLK+T  F    KS      L       QC  VW P   QKFETLS LP
Sbjct: 19  PAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLP 78

Query: 249 PLSSEQIANQEDFMVRKGWTPCIECD-KNESV*REHFHGCGYYHGRYWVMWKLRMCGCQD 425
           PLS E +A Q ++++ KGW PC+E + ++  V RE+    GYY GRYWVMWKL M GC D
Sbjct: 79  PLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTD 138

Query: 426 AAAVLREIAECAQEY 470
           A  VL E+ E ++ Y
Sbjct: 139 ATQVLAELQEASKTY 153


>sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small chain
           2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1
          Length = 180

 Score =  106 bits (264), Expect = 6e-23
 Identities = 59/134 (44%), Positives = 80/134 (59%), Gaps = 4/134 (2%)
 Frame = +3

Query: 81  PAE-SLAKSFSGLKATTLF-APKSPRPARHL*WEPCERQCY-VWKP*DNQKFETLS*LPP 251
           PA+ S+   F+GLK+T  F A K       L       QC  VW   + +++ETLS LPP
Sbjct: 18  PAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKVWPTQNMKRYETLSYLPP 77

Query: 252 LSSEQIANQEDFMVRKGWTPCIECDKNES-V*REHFHGCGYYHGRYWVMWKLRMCGCQDA 428
           L+++Q+A Q D+++   W PC+E + +   V REH +  GYY GRYW MWKL M GC D 
Sbjct: 78  LTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDP 137

Query: 429 AAVLREIAECAQEY 470
           A VL E+ EC +EY
Sbjct: 138 AQVLNELEECKKEY 151


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
          Length = 178

 Score =  105 bits (263), Expect = 8e-23
 Identities = 58/137 (42%), Positives = 81/137 (59%), Gaps = 4/137 (2%)
 Frame = +3

Query: 72  NCAPAES-LAKSFSGLKATTLF-APKSPRPARHL*WEPCERQCY-VWKP*DNQKFETLS* 242
           N AP ++ LA  F+GLK++  F   K       +        C  VW P   +KFETLS 
Sbjct: 13  NRAPVQANLATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSY 72

Query: 243 LPPLSSEQIANQEDFMVRKGWTPCIECDKNES-V*REHFHGCGYYHGRYWVMWKLRMCGC 419
           LPPL+ EQ+  + ++++RKGW PC+E +  +  V R++    GYY GRYW MW+L + G 
Sbjct: 73  LPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGT 132

Query: 420 QDAAAVLREIAECAQEY 470
            DAA VL+E+AEC  EY
Sbjct: 133 TDAAQVLKEVAECKAEY 149
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 135
Score (bit) 173.0
E-value 3.0e-42
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960131|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_J09, 5'
         (471 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   173   3e-42
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   121   2e-26
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   118   1e-25
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   117   4e-25
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   115   1e-24
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   113   5e-24
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   112   7e-24
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   112   7e-24
tr|Q9SPL1|Q9SPL1_LACSA Ribulose bisphosphate carboxylase small c...   112   1e-23
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c...   112   1e-23
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   111   2e-23
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   111   2e-23
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   111   2e-23
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   110   4e-23
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...   110   4e-23
tr|A9U380|A9U380_PHYPA Ribulose bisphosphate carboxylase small c...   110   5e-23
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   110   5e-23
tr|Q67IU5|Q67IU5_ORYSJ Ribulose bisphosphate carboxylase small c...   109   8e-23
tr|O49130|O49130_FRIAG Ribulose bisphosphate carboxylase small c...   109   8e-23
tr|B8AHT7|B8AHT7_ORYSI Putative uncharacterized protein OS=Oryza...   109   8e-23
tr|A3A381|A3A381_ORYSJ Ribulose bisphosphate carboxylase small c...   109   8e-23
tr|O49128|O49128_FRIAG Ribulose bisphosphate carboxylase small c...   108   1e-22
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   108   1e-22
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   108   1e-22
tr|O50053|O50053_FRIAG Ribulose bisphosphate carboxylase small c...   108   1e-22
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   108   1e-22
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   108   1e-22
tr|A7Q6D7|A7Q6D7_VITVI Ribulose bisphosphate carboxylase small c...   108   1e-22
tr|O49131|O49131_FRIAG Ribulose bisphosphate carboxylase small c...   108   2e-22
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   108   2e-22

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  173 bits (439), Expect = 3e-42
 Identities = 88/135 (65%), Positives = 100/135 (74%), Gaps = 1/135 (0%)
 Frame = +3

Query: 69  PNCAPA-ESLAKSFSGLKATTLFAPKSPRPARHL*WEPCERQCYVWKP*DNQKFETLS*L 245
           P+CA A ESL+KSFSGLKA TLFAPK   P              VWKP DN+KFETLS L
Sbjct: 13  PSCAAAAESLSKSFSGLKANTLFAPKCANPLAISNGSRISAML-VWKPYDNKKFETLSYL 71

Query: 246 PPLSSEQIANQEDFMVRKGWTPCIECDKNESV*REHFHGCGYYHGRYWVMWKLRMCGCQD 425
           PPL+++QIA Q ++MVRKGWTPCIE D   SV REHFHG GYY GRYW+MWKL M GC D
Sbjct: 72  PPLTNDQIAKQVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTD 131

Query: 426 AAAVLREIAECAQEY 470
           + +VLREIAECA+EY
Sbjct: 132 SGSVLREIAECAKEY 146


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  121 bits (304), Expect = 2e-26
 Identities = 69/131 (52%), Positives = 80/131 (61%), Gaps = 4/131 (3%)
 Frame = +3

Query: 90  SLAKSFSGLKATTLFAPKSPRPARHL*WEPCERQCY-VWKP*DNQKFETLS*LPPLSSEQ 266
           S  K FSGLK+TTLFA K+ R +          QC  VW P    KFET S LPPL+ +Q
Sbjct: 24  SSVKQFSGLKSTTLFASKARRLSSV--HNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQ 81

Query: 267 IANQEDFMVRKGWTPCIECDKNESV*REHFHG---CGYYHGRYWVMWKLRMCGCQDAAAV 437
           IA Q DFM+++   PCIE D   SV R +F G    GYY GRYW MWKL M GC D+A V
Sbjct: 82  IAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQV 141

Query: 438 LREIAECAQEY 470
           LREI EC Q +
Sbjct: 142 LREIQECKQSF 152


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  118 bits (296), Expect = 1e-25
 Identities = 68/131 (51%), Positives = 79/131 (60%), Gaps = 4/131 (3%)
 Frame = +3

Query: 90  SLAKSFSGLKATTLFAPKSPRPARHL*WEPCERQCY-VWKP*DNQKFETLS*LPPLSSEQ 266
           S  K FSGLK+TTL A K+ R +          QC  VW P    KFET S LPPL+ +Q
Sbjct: 24  SSVKQFSGLKSTTLSASKARRLSSV--HNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQ 81

Query: 267 IANQEDFMVRKGWTPCIECDKNESV*REHFHG---CGYYHGRYWVMWKLRMCGCQDAAAV 437
           IA Q DFM+++   PCIE D   SV R +F G    GYY GRYW MWKL M GC D+A V
Sbjct: 82  IAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQV 141

Query: 438 LREIAECAQEY 470
           LREI EC Q +
Sbjct: 142 LREIQECKQSF 152


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  117 bits (292), Expect = 4e-25
 Identities = 66/136 (48%), Positives = 85/136 (62%), Gaps = 5/136 (3%)
 Frame = +3

Query: 78  APAESLA-KSFSGLKATTLFAPKSPRPARHL*WEPCERQCY-VWKP*DNQKFETLS*LPP 251
           AP+ES + K+FSGLK+ TLF+ K+ + +          QC  VW P    KFET S LPP
Sbjct: 54  APSESSSVKAFSGLKSATLFSGKTQKLSSVQ--NGSRVQCMQVWNPIGQPKFETFSYLPP 111

Query: 252 LSSEQIANQEDFMVRKGWTPCIECDKNESV*REHFHGC---GYYHGRYWVMWKLRMCGCQ 422
           L+ +QIA Q D+M+++   PCIE D   SV R +F G    GYY GRYW MWKL M GC 
Sbjct: 112 LTDDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCT 171

Query: 423 DAAAVLREIAECAQEY 470
           D++ VLREI EC  ++
Sbjct: 172 DSSQVLREIQECKSQF 187


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  115 bits (288), Expect = 1e-24
 Identities = 65/131 (49%), Positives = 78/131 (59%), Gaps = 4/131 (3%)
 Frame = +3

Query: 90  SLAKSFSGLKATTLFAPKSPRPARHL*WEPCERQCY-VWKP*DNQKFETLS*LPPLSSEQ 266
           S  K+FSGLK+ TLF  KS + +          QC  VW P    KFET S LPPLS +Q
Sbjct: 29  SSVKAFSGLKSATLFTSKSQQLSSVQ--NGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQ 86

Query: 267 IANQEDFMVRKGWTPCIECDKNESV*REHFHG---CGYYHGRYWVMWKLRMCGCQDAAAV 437
           IA Q D+M+++   PCIE D   +V R +F G    GYY GRYW MWKL M GC D++ V
Sbjct: 87  IARQVDYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQV 146

Query: 438 LREIAECAQEY 470
           LREI EC   Y
Sbjct: 147 LREIQECKTSY 157


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  113 bits (282), Expect = 5e-24
 Identities = 62/128 (48%), Positives = 77/128 (60%), Gaps = 4/128 (3%)
 Frame = +3

Query: 99  KSFSGLKATTLFAPKSPRPARHL*WEPCERQCY-VWKP*DNQKFETLS*LPPLSSEQIAN 275
           K+FSGLK  TLF+ K+ +            QC  VW P    KFET S LPPL+ +QIA 
Sbjct: 32  KAFSGLKPATLFSSKTQKLGAVQ--NGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAK 89

Query: 276 QEDFMVRKGWTPCIECDKNESV*REHFHGC---GYYHGRYWVMWKLRMCGCQDAAAVLRE 446
           Q D+M+++   PCIE D   SV R +F G    GYY GRYW MWKL M GC D++ VLRE
Sbjct: 90  QVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLRE 149

Query: 447 IAECAQEY 470
           I EC  ++
Sbjct: 150 IQECKSQF 157


>tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small
           chain OS=Lactuca sativa PE=2 SV=1
          Length = 181

 Score =  112 bits (281), Expect = 7e-24
 Identities = 61/135 (45%), Positives = 80/135 (59%), Gaps = 5/135 (3%)
 Frame = +3

Query: 81  PAE-SLAKSFSGLKATTLF--APKSPRPARHL*WEPCERQCY-VWKP*DNQKFETLS*LP 248
           PA+ SLA  F+GLK+   F    K+      L       QC  VW P   +K+ETLS LP
Sbjct: 17  PAQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLP 76

Query: 249 PLSSEQIANQEDFMVRKGWTPCIECDKNES-V*REHFHGCGYYHGRYWVMWKLRMCGCQD 425
           PLS E ++ + D+++R  W PC+E +     V REH H  GYY GRYW MWKL M GC D
Sbjct: 77  PLSDEALSKEIDYLIRNKWVPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTD 136

Query: 426 AAAVLREIAECAQEY 470
           +A V++E+ EC +EY
Sbjct: 137 SAQVMKEVGECKKEY 151


>tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small
           chain OS=Panax ginseng PE=2 SV=1
          Length = 183

 Score =  112 bits (281), Expect = 7e-24
 Identities = 60/134 (44%), Positives = 80/134 (59%), Gaps = 4/134 (2%)
 Frame = +3

Query: 81  PAE-SLAKSFSGLKATTLF-APKSPRPARHL*WEPCERQCY-VWKP*DNQKFETLS*LPP 251
           PA+ S+   F+GLK+T  F   +       L       QC  VW P   +KFETLS LP 
Sbjct: 19  PAQASMVAPFTGLKSTAAFPVTRKVNDITSLPSNGGRVQCMKVWPPLGLKKFETLSYLPQ 78

Query: 252 LSSEQIANQEDFMVRKGWTPCIECDKNES-V*REHFHGCGYYHGRYWVMWKLRMCGCQDA 428
           L+ EQ++ + D+++R GW PC+E +     V REH H  GYY GRYW MWKL M GC D+
Sbjct: 79  LTQEQLSKEVDYLLRSGWVPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDS 138

Query: 429 AAVLREIAECAQEY 470
           + VL+E+ EC +EY
Sbjct: 139 SQVLKEVEECKKEY 152


>tr|Q9SPL1|Q9SPL1_LACSA Ribulose bisphosphate carboxylase small
           chain OS=Lactuca sativa PE=2 SV=1
          Length = 174

 Score =  112 bits (279), Expect = 1e-23
 Identities = 59/131 (45%), Positives = 77/131 (58%), Gaps = 4/131 (3%)
 Frame = +3

Query: 90  SLAKSFSGLKATTLF--APKSPRPARHL*WEPCERQCY-VWKP*DNQKFETLS*LPPLSS 260
           SLA  F+GLK+   F    K+      L       QC  VW P   +K+ETLS LPPLS 
Sbjct: 21  SLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSCLPPLSD 80

Query: 261 EQIANQEDFMVRKGWTPCIECDKNES-V*REHFHGCGYYHGRYWVMWKLRMCGCQDAAAV 437
           E ++ + D+++R  W PC+E +     V REH H  GYY GRYW MWKL M GC D+A V
Sbjct: 81  EALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQV 140

Query: 438 LREIAECAQEY 470
           ++E+ EC +EY
Sbjct: 141 MKEVGECKKEY 151


>tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small
           chain OS=Populus trichocarpa PE=2 SV=1
          Length = 170

 Score =  112 bits (279), Expect = 1e-23
 Identities = 50/90 (55%), Positives = 63/90 (70%)
 Frame = +3

Query: 201 WKP*DNQKFETLS*LPPLSSEQIANQEDFMVRKGWTPCIECDKNESV*REHFHGCGYYHG 380
           W P +N+KFE LS LPPLS + IA + D+M++KGW PC+E D+  SV REH    GYY G
Sbjct: 53  WNPINNKKFEALSYLPPLSEDSIAKEIDYMMKKGWIPCLEFDEVGSVRREHSRMPGYYDG 112

Query: 381 RYWVMWKLRMCGCQDAAAVLREIAECAQEY 470
           RYW +WKL M GC D++ VL EI EC + Y
Sbjct: 113 RYWTLWKLPMFGCTDSSQVLEEIHECKKAY 142