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NBDC - LSDB Archive
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DK960138
Clone id TST39A01NGRL0006_J16
Library
Length 580
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_J16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AAGGGAGAGTGATTGTACGCAGTATTCAGTATGGCCATCTCCATAGCCGCTTCCTCGGCA
GTTGTCGCTCCTAGCTGCGCCCCCGCAGAGAGCTTGTCAAAGAGCTTCTCTGGTCTCAAG
GCCACTACCCTGTTCGCCCCCAAGAGCCCCAACCCGCTCGCCATCTCTAATGGCAGCCGT
GTGAGCGCCATGCTTGTGTGGAAGCCGTATGACAACAAGAAGTTCGAGACTCTGTCCTAC
TTGCCGCCTTTGTCAAGTGAGCAGATTGCGAAGCAGGTGGACTTCATGGTCCGAAAAGGC
TGGACCCCTTGCATTGAGTTCGACAAAATCGGGAGCGTGTACCGAGAGCACTTCCACGGC
AGCGGCTACTACGATGGGCGGTACTGGGTGATGTGGAAGCTGCCCATGTTTGGCTGCCAA
GATGCCGCTGCTGCGCTGCGTGAAATTGCAGAGTGCGCCAAGGAGTATCCTGAAGCCTTC
ATCCGCGTGCTGGGCTTTGACGCTAAGAGGCAGGTGCAGGTCTCCGGCTTCCTTGTCCAG
AAGCCCTCTGTCTAAAACTTTCTTAAAGCAAGCCAATTTA
■■Homology search results ■■ -
sp_hit_id P19312
Definition sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba
Align length 152
Score (bit) 170.0
E-value 5.0e-42
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960138|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_J16, 5'
         (580 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   170   5e-42
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   170   5e-42
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   169   1e-41
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   167   3e-41
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   167   5e-41
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   167   5e-41
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   167   5e-41
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   166   1e-40
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha...   166   1e-40
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai...   165   1e-40
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   165   2e-40
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...   165   2e-40
sp|Q08186|RBS6_MESCR Ribulose bisphosphate carboxylase small cha...   165   2e-40
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...   164   3e-40
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   164   4e-40
sp|Q08183|RBS3_MESCR Ribulose bisphosphate carboxylase small cha...   163   5e-40
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   163   7e-40
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   162   9e-40
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha...   162   9e-40
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai...   162   1e-39
sp|Q08184|RBS4_MESCR Ribulose bisphosphate carboxylase small cha...   162   1e-39
sp|Q04450|RBS2_MESCR Ribulose bisphosphate carboxylase small cha...   162   1e-39
sp|P16032|RBS1_MESCR Ribulose bisphosphate carboxylase small cha...   162   1e-39
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   162   1e-39
sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai...   162   1e-39
sp|P26573|RBS8_NICPL Ribulose bisphosphate carboxylase small cha...   161   2e-39
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   161   2e-39
sp|P29684|RBS_HEVBR Ribulose bisphosphate carboxylase small chai...   160   4e-39
sp|O22077|RBS_FAGCR Ribulose bisphosphate carboxylase small chai...   160   6e-39
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   160   6e-39

>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
          Length = 177

 Score =  170 bits (430), Expect = 5e-42
 Identities = 83/152 (54%), Positives = 100/152 (65%), Gaps = 4/152 (2%)
 Frame = +1

Query: 106 FSGLKATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 273
           F+GL+++  F    K+ N L+   SNG RVS M VW P   KKFETLSYLPPLS E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 274 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDXXXXXXXXXX 453
           +VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC D          
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 454 XXKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 549
             K YPE F+R++GFD KRQVQ   F+  KP+
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
          Length = 177

 Score =  170 bits (430), Expect = 5e-42
 Identities = 83/152 (54%), Positives = 100/152 (65%), Gaps = 4/152 (2%)
 Frame = +1

Query: 106 FSGLKATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 273
           F+GL+++  F    K+ N L+   SNG RVS M VW P   KKFETLSYLPPLS E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 274 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDXXXXXXXXXX 453
           +VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC D          
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 454 XXKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 549
             K YPE F+R++GFD KRQVQ   F+  KP+
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  169 bits (427), Expect = 1e-41
 Identities = 83/156 (53%), Positives = 101/156 (64%), Gaps = 5/156 (3%)
 Frame = +1

Query: 94  LSKSFSGLKATTLF--APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSE 261
           L+  F+GLK+   F    K+ N  +   SNG RV  M VW P   KK+ETLSYLPPLS E
Sbjct: 22  LAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDE 81

Query: 262 QIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDXXXXX 438
            ++K++D+++R  W PC+EF+ + G VYREH H  GYYDGRYW MWKLPMFGC D     
Sbjct: 82  ALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVM 141

Query: 439 XXXXXXXKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 546
                  KEYP AFIRV+GFD  RQVQ   F+V KP
Sbjct: 142 KEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  167 bits (424), Expect = 3e-41
 Identities = 84/152 (55%), Positives = 101/152 (66%), Gaps = 5/152 (3%)
 Frame = +1

Query: 106 FSGLKATTLF--APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 273
           F+ LK+T+ F    K+ N +    SNG RV  M VW P   KKFETLSYLPPLSSEQ+AK
Sbjct: 28  FTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAK 87

Query: 274 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDXXXXXXXXX 450
           +VD+++RK   PC+EF+ + G VYREH    GYYDGRYW MWKLPMFGC D         
Sbjct: 88  EVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELE 147

Query: 451 XXXKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 546
              K YP AFIR++GFD KRQVQ+  F+  KP
Sbjct: 148 ECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179


>sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1
          Length = 183

 Score =  167 bits (422), Expect = 5e-41
 Identities = 82/152 (53%), Positives = 103/152 (67%), Gaps = 4/152 (2%)
 Frame = +1

Query: 106 FSGLKATTLF--APKSPNPLAI-SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 276
           F+GLK+++ F    KS +  +I SNG RV  M VW P   KKFETLSYLPPLSSE +AK+
Sbjct: 30  FNGLKSSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKE 89

Query: 277 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDXXXXXXXXXX 453
           VD+++RK W PC+EF+ + G VYRE+    GYYDGRYW MWKLPMFGC D          
Sbjct: 90  VDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEE 149

Query: 454 XXKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 549
             K YP++FIR++GFD  RQVQ   F+  KP+
Sbjct: 150 AKKAYPQSFIRIIGFDNVRQVQCISFIAYKPA 181


>sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1
          Length = 187

 Score =  167 bits (422), Expect = 5e-41
 Identities = 80/158 (50%), Positives = 100/158 (63%), Gaps = 5/158 (3%)
 Frame = +1

Query: 103 SFSGLKATTLFAPKSPNPLAI----SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIA 270
           SF+GLK+   F       L I    SNG RV  MLVW P + KK+ETLSYLP LS EQ+ 
Sbjct: 25  SFNGLKSAASFPVTRKQDLDITSIASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLL 84

Query: 271 KQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDXXXXXXXX 447
           K+++++++KGW PC+EF+ + G VYREH    GYYDGRYW MWKLPMFGC D        
Sbjct: 85  KEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEV 144

Query: 448 XXXXKEYPEAFIRVLGFDAKRQVQVSGFLVQKPSV*NF 561
               K YP+A+IR++GFD  RQVQ   F+  KP    F
Sbjct: 145 QEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEATKF 182


>sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1
          Length = 177

 Score =  167 bits (422), Expect = 5e-41
 Identities = 82/153 (53%), Positives = 100/153 (65%), Gaps = 5/153 (3%)
 Frame = +1

Query: 106 FSGLKATTLF-----APKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIA 270
           F+GL+++  F     A K+ + L  SNG +VS M VW P   KKFETLSYLPPLS E +A
Sbjct: 26  FNGLRSSVAFPATRKANKNLSTLP-SNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLA 84

Query: 271 KQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDXXXXXXXXX 450
           K+VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC D         
Sbjct: 85  KEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVE 144

Query: 451 XXXKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 549
              K YPE F+R++GFD KRQVQ   F+  KP+
Sbjct: 145 EAKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1
          Length = 177

 Score =  166 bits (419), Expect = 1e-40
 Identities = 76/128 (59%), Positives = 87/128 (67%)
 Frame = +1

Query: 166 SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYR 345
           SNG RVS M VW P   KKFETLSYLPPLS E +AK+VD+++R  W PCIEF K G VYR
Sbjct: 50  SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYR 109

Query: 346 EHFHGSGYYDGRYWVMWKLPMFGCQDXXXXXXXXXXXXKEYPEAFIRVLGFDAKRQVQVS 525
           E+    GYYDGRYW MWKLPMFGC D            K YPE F+R++GFD KRQVQ  
Sbjct: 110 ENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCI 169

Query: 526 GFLVQKPS 549
            F+  KP+
Sbjct: 170 SFIAYKPT 177


>sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2
          Length = 173

 Score =  166 bits (419), Expect = 1e-40
 Identities = 81/153 (52%), Positives = 100/153 (65%), Gaps = 4/153 (2%)
 Frame = +1

Query: 103 SFSGLKATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIA 270
           +F+G +++  F    K+ N L+   S+G RVS M VW P   KKFETLSYLPPLS E +A
Sbjct: 21  AFNGCRSSVAFPATRKANNDLSTLPSSGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLA 80

Query: 271 KQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDXXXXXXXXX 450
           K+VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC D         
Sbjct: 81  KEVDYLLRNDWVPCIEFSKEGFVYRENNASPGYYDGRYWTMWKLPMFGCTDASQVIAEVE 140

Query: 451 XXXKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 549
              K YPE F+R++GFD KRQVQ   F+  KP+
Sbjct: 141 EAKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 173


>sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1
          Length = 170

 Score =  165 bits (418), Expect = 1e-40
 Identities = 79/150 (52%), Positives = 96/150 (64%), Gaps = 3/150 (2%)
 Frame = +1

Query: 106 FSGLKATTLF--APKSPNPLA-ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 276
           F GLK+T     A +S   L  +SNG R+  M VW  Y NKKFETLSYLPPLS++ + KQ
Sbjct: 17  FQGLKSTASLPVARRSSRSLGNVSNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQ 76

Query: 277 VDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDXXXXXXXXXXX 456
           VD+++R GW PC+EF K+G VYRE+     YYDGRYW MWKLPMFGC D           
Sbjct: 77  VDYLLRNGWIPCLEFSKVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEA 136

Query: 457 XKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 546
            K YP+AF RV+GFD  +Q Q   F+  KP
Sbjct: 137 IKSYPDAFHRVIGFDNIKQTQCVSFIAYKP 166
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 152
Score (bit) 266.0
E-value 5.0e-70
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960138|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_J16, 5'
         (580 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   266   5e-70
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   184   2e-45
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   182   2e-44
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   182   2e-44
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   182   2e-44
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   181   2e-44
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   179   1e-43
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   172   2e-41
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   171   2e-41
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   171   3e-41
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   171   3e-41
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   169   8e-41
tr|A7LIT5|A7LIT5_9ROSI Ribulose bisphosphate carboxylase small c...   169   1e-40
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...   168   2e-40
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   168   2e-40
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   167   3e-40
tr|Q8CFJ2|Q8CFJ2_MOUSE Putative uncharacterized protein OS=Mus m...   167   4e-40
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   167   4e-40
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   167   4e-40
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c...   167   5e-40
tr|Q6RWD8|Q6RWD8_CAPAN Ribulose bisphosphate carboxylase small c...   166   9e-40
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   166   9e-40
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   166   9e-40
tr|Q9ZWG3|Q9ZWG3_9POAL Ribulose bisphosphate carboxylase small c...   166   1e-39
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...   166   1e-39
tr|B4FSJ3|B4FSJ3_MAIZE Putative uncharacterized protein OS=Zea m...   165   1e-39
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   165   1e-39
tr|Q9FEE4|Q9FEE4_WHEAT Ribulose bisphosphate carboxylase small c...   165   2e-39
tr|Q9SAW7|Q9SAW7_TRITU Ribulose bisphosphate carboxylase small c...   164   3e-39
tr|Q9SDY9|Q9SDY9_9POAL Ribulose bisphosphate carboxylase small c...   164   3e-39

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  266 bits (681), Expect = 5e-70
 Identities = 125/152 (82%), Positives = 134/152 (88%)
 Frame = +1

Query: 94  LSKSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 273
           LSKSFSGLKA TLFAPK  NPLAISNGSR+SAMLVWKPYDNKKFETLSYLPPL+++QIAK
Sbjct: 22  LSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQIAK 81

Query: 274 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDXXXXXXXXXX 453
           QV++MVRKGWTPCIEFD IGSVYREHFHGSGYYDGRYW+MWKLPMFGC D          
Sbjct: 82  QVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLREIAE 141

Query: 454 XXKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 549
             KEYP AFIRVLGFDAKRQVQV+GFLV+KPS
Sbjct: 142 CAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPS 173


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  184 bits (468), Expect = 2e-45
 Identities = 87/153 (56%), Positives = 107/153 (69%), Gaps = 3/153 (1%)
 Frame = +1

Query: 100 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 279
           K FSGLK+TTLFA K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 27  KQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 280 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDXXXXXXXXX 450
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D         
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 451 XXXKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 549
              + +P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  182 bits (461), Expect = 2e-44
 Identities = 84/153 (54%), Positives = 107/153 (69%), Gaps = 3/153 (1%)
 Frame = +1

Query: 100 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 279
           K+FSGLK+ TLF+ K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 62  KAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 121

Query: 280 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDXXXXXXXXX 450
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D         
Sbjct: 122 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 181

Query: 451 XXXKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 549
               ++P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 182 ECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 214


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  182 bits (461), Expect = 2e-44
 Identities = 85/153 (55%), Positives = 105/153 (68%), Gaps = 3/153 (1%)
 Frame = +1

Query: 100 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 279
           K+FSGLK+ TLF  KS    ++ NGSRV  M VW P    KFET SYLPPLS +QIA+QV
Sbjct: 32  KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQV 91

Query: 280 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDXXXXXXXXX 450
           D+M+++   PCIEFD +G+V R +F G   SGYYDGRYW MWKLPMFGC D         
Sbjct: 92  DYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 451 XXXKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 549
                YP  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 152 ECKTSYPSCWVRVLGFDSKKQVQICGFLVARPN 184


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  182 bits (461), Expect = 2e-44
 Identities = 85/153 (55%), Positives = 106/153 (69%), Gaps = 3/153 (1%)
 Frame = +1

Query: 100 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 279
           K+FSGLK  TLF+ K+    A+ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 32  KAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 91

Query: 280 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDXXXXXXXXX 450
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D         
Sbjct: 92  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 451 XXXKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 549
               ++P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 152 ECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 184


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  181 bits (460), Expect = 2e-44
 Identities = 86/153 (56%), Positives = 106/153 (69%), Gaps = 3/153 (1%)
 Frame = +1

Query: 100 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 279
           K FSGLK+TTL A K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 27  KQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 280 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDXXXXXXXXX 450
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D         
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 451 XXXKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 549
              + +P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  179 bits (454), Expect = 1e-43
 Identities = 82/153 (53%), Positives = 107/153 (69%), Gaps = 3/153 (1%)
 Frame = +1

Query: 100 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 279
           K+FSGLK+ TLF+ ++    ++ NGSRV  M VW P    KFET SYLPPL+ ++IAKQV
Sbjct: 31  KAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQV 90

Query: 280 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDXXXXXXXXX 450
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D         
Sbjct: 91  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 150

Query: 451 XXXKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 549
               ++P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 151 ECKTQFPSCWVRVLGFDSKKQVQICGFLVSRPN 183


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_146969 PE=3 SV=1
          Length = 181

 Score =  172 bits (435), Expect = 2e-41
 Identities = 80/150 (53%), Positives = 101/150 (67%)
 Frame = +1

Query: 100 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 279
           K+FSGLK++TLF+ K+ +  ++ NGSRV  M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 280 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDXXXXXXXXXXXX 459
           D+M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD            
Sbjct: 92  DYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDPAQVLREIEECK 151

Query: 460 KEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 549
           K +P  F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  171 bits (434), Expect = 2e-41
 Identities = 79/150 (52%), Positives = 100/150 (66%)
 Frame = +1

Query: 100 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 279
           K+FSGLK+ T+F+ K+ N  ++ NGSRV  M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSATVFSGKAQNSSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 280 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDXXXXXXXXXXXX 459
           ++M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD            
Sbjct: 92  EYMIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 460 KEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 549
           K +P  F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small
           chain OS=Lactuca sativa PE=2 SV=1
          Length = 181

 Score =  171 bits (433), Expect = 3e-41
 Identities = 83/156 (53%), Positives = 102/156 (65%), Gaps = 5/156 (3%)
 Frame = +1

Query: 94  LSKSFSGLKATTLF--APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSE 261
           L+  F+GLK+   F    K+ N  +   SNG RV  M VW P   KK+ETLSYLPPLS E
Sbjct: 22  LAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDE 81

Query: 262 QIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDXXXXX 438
            ++K++D+++R  W PC+EF+ + G VYREH H  GYYDGRYW MWKLPMFGC D     
Sbjct: 82  ALSKEIDYLIRNKWVPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVM 141

Query: 439 XXXXXXXKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 546
                  KEYP AFIRV+GFD+ RQVQ   F+V KP
Sbjct: 142 KEVGECKKEYPNAFIRVIGFDSVRQVQCISFIVSKP 177