DK960141
Clone id TST39A01NGRL0006_J19
Library
Length 630
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_J19. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GGAAATTTGCCGGGCTTCGACGTCGATGGGCTGATTGATTACCACAGCTACTTCCAGCTG
AAGGAACACCCCCAGCACAAGGAAAAATCTGTGATCCAGTGGCGCTACACCTCCAAGCCC
TCGCCCTACCTGTCAAAGACCGAGGCGGACGAGGTCTGTTTCAGTCTTTACGACACGGCC
GTCGGGGATCTCCGCGCCCGCCTCGCTAGCCCACTCAAGACTGGTATTGCCCACCGCCGC
TCTCCGCCCACCGAGCCCGTCGCCTTCCTCAAGGCAGCCTTTTCTGAGGTCTGAGGGCCA
TCTCACAACCAGATGGGCTAATTTGGGCATTTTGGGAATTTCGACAAGTTAGAGGGCTAT
TTTGGTAATTTTTCCTTCTGTTTAGTGCTTGATATACTCGTCCCTCAGCTTCTTCGGTTA
AGATGTCCACTTTTAGCTTCTTTGTCAAACTACGTCATGTCAAAGTCCGCTCGAGTGTGG
CTGTACTTGCGTCATCTTGATAGTCAATAAAAGTTTCTTTTGTAACATCGATGTATTTTT
GGTAGTTGGTGGAACCTTGTACTTGATATCTATGCCTTGCTCTAGTTTCTAGCTTTGGTT
TATGGAATAAACTCTTCAAAATATGATCAT
■■Homology search results ■■ -
sp_hit_id A1S3Z1
Definition sp|A1S3Z1|RIMM_SHEAM Ribosome maturation factor rimM OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
Align length 32
Score (bit) 33.5
E-value 0.93
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960141|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_J19, 5'
(630 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A1S3Z1|RIMM_SHEAM Ribosome maturation factor rimM OS=Shewanel... 33 0.93
sp|Q0HSK2|RIMM_SHESR Ribosome maturation factor rimM OS=Shewanel... 32 2.7
sp|Q0HGA9|RIMM_SHESM Ribosome maturation factor rimM OS=Shewanel... 32 2.7
sp|A0KZM2|RIMM_SHESA Ribosome maturation factor rimM OS=Shewanel... 32 2.7
sp|Q8EH71|RIMM_SHEON Ribosome maturation factor rimM OS=Shewanel... 32 2.7
sp|Q9VFJ0|CP131_DROME Probable cytochrome P450 313a1 OS=Drosophi... 31 6.1
sp|Q7M962|NAPA_WOLSU Periplasmic nitrate reductase OS=Wolinella ... 30 7.9

>sp|A1S3Z1|RIMM_SHEAM Ribosome maturation factor rimM OS=Shewanella
amazonensis (strain ATCC BAA-1098 / SB2B) GN=rimM PE=3
SV=1
Length = 176

Score = 33.5 bits (75), Expect = 0.93
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +1

Query: 22 VDGLIDYHSYFQLKEHPQHKEKSVIQWRYTSK 117
V+G+ DY +F LKEH + +E V QWR+ K
Sbjct: 32 VEGIFDYSPWF-LKEHGEWREVKVSQWRFHGK 62


>sp|Q0HSK2|RIMM_SHESR Ribosome maturation factor rimM OS=Shewanella
sp. (strain MR-7) GN=rimM PE=3 SV=1
Length = 176

Score = 32.0 bits (71), Expect = 2.7
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1

Query: 22 VDGLIDYHSYFQLKEHPQHKEKSVIQWRYTSK 117
V+G+ DY + +KE+ + +E VIQWRY K
Sbjct: 32 VEGIFDYSPWL-IKENGEWREVKVIQWRYQGK 62


>sp|Q0HGA9|RIMM_SHESM Ribosome maturation factor rimM OS=Shewanella
sp. (strain MR-4) GN=rimM PE=3 SV=1
Length = 176

Score = 32.0 bits (71), Expect = 2.7
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1

Query: 22 VDGLIDYHSYFQLKEHPQHKEKSVIQWRYTSK 117
V+G+ DY + +KE+ + +E VIQWRY K
Sbjct: 32 VEGIFDYSPWL-IKENGEWREVKVIQWRYQGK 62


>sp|A0KZM2|RIMM_SHESA Ribosome maturation factor rimM OS=Shewanella
sp. (strain ANA-3) GN=rimM PE=3 SV=1
Length = 176

Score = 32.0 bits (71), Expect = 2.7
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1

Query: 22 VDGLIDYHSYFQLKEHPQHKEKSVIQWRYTSK 117
V+G+ DY + +KE+ + +E VIQWRY K
Sbjct: 32 VEGIFDYSPWL-IKENGEWREVKVIQWRYQGK 62


>sp|Q8EH71|RIMM_SHEON Ribosome maturation factor rimM OS=Shewanella
oneidensis GN=rimM PE=3 SV=1
Length = 177

Score = 32.0 bits (71), Expect = 2.7
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1

Query: 22 VDGLIDYHSYFQLKEHPQHKEKSVIQWRYTSK 117
V+G+ DY + +KE+ + +E VIQWRY K
Sbjct: 33 VEGIFDYSPWL-IKENGEWREVKVIQWRYQGK 63


>sp|Q9VFJ0|CP131_DROME Probable cytochrome P450 313a1 OS=Drosophila
melanogaster GN=Cyp313a1 PE=2 SV=2
Length = 492

Score = 30.8 bits (68), Expect = 6.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1

Query: 13 GFDVDGLIDYHSYFQLKEHPQHKE 84
G+D L YH+ F L HP+H+E
Sbjct: 298 GYDTSALTVYHALFLLANHPEHQE 321


>sp|Q7M962|NAPA_WOLSU Periplasmic nitrate reductase OS=Wolinella
succinogenes GN=napA PE=3 SV=2
Length = 928

Score = 30.4 bits (67), Expect = 7.9
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +1

Query: 1 GNLPGFDVDGLIDYHSYFQLKEHPQHKEKSVIQWRYTSKPSPYLSKTEADEVCFSLYDTA 180
GN G D+ YH LK +++ QWR+ +K PY K + E F+ Y A
Sbjct: 715 GNGHGHDLADFDTYHKVRGLKWPVVDGKET--QWRFNAKYDPYARKAGSGE--FAFYGDA 770

Query: 181 VGDL-RARLASP 213
+ +L R L SP
Sbjct: 771 MKELPRGDLLSP 782


tr_hit_id A4SAI8
Definition tr|A4SAI8|A4SAI8_OSTLU Predicted protein (Fragment) OS=Ostreococcus lucimarinus (strain CCE9901)
Align length 35
Score (bit) 35.4
E-value 2.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960141|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_J19, 5'
(630 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A4SAI8|A4SAI8_OSTLU Predicted protein (Fragment) OS=Ostreococ... 35 2.9

>tr|A4SAI8|A4SAI8_OSTLU Predicted protein (Fragment) OS=Ostreococcus
lucimarinus (strain CCE9901) GN=OSTLU_94026 PE=4 SV=1
Length = 110

Score = 35.4 bits (80), Expect = 2.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1

Query: 58 LKEHPQHKEKSVIQWRYTSKPSPYLSKTEADEVCF 162
L E+ QHK+ ++WRY +P ++TEA C+
Sbjct: 10 LSEYEQHKDYETLKWRYVKRPGAQAARTEAWYGCY 44