DK960143
Clone id TST39A01NGRL0006_J21
Library
Length 643
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_J21. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GGGGAAGCACAAAAGAAGAGGAAGGCTATGTTTAGTTTTGCAGAGGATGTGGAAGGTGGG
AATCTATCTTCTGCAAGTCTGAGGCTAGAGAATTCCGCAAGAAGCGTAGAAAAATCTTGT
AGCTGGGTTAGTGAAAAAGAGGAACTCATCTCCTCTGTTATAAGCATTGCAAAACAAAAA
GTTGTCGAGGCTAAGAAAGTGATAGCCAAGAGGAAGGGGAAGCACAAAAGAAGAGGAAGA
TTTTCACTCCCAAGGTCAAAACGATCCACTAAACCAATGTCTTCGGAAAAACATGAAGCC
TTTGAATGGAAAGATCCATGTCTTGCCCCTGATAGCTCAAAAGAGAATTGTAGTGGCCAA
AGTCATGATAGTAATGTCCCCTCTTCGGTGACATCAGCACGGAAAAGAATGAAGCAGATG
GTTCCACCACCACTTCCTTCACCAGTAGTGTCAATATCAACACAACTTGTTTCAAAAGCT
TTTGGTTTAAAAACCTCAAAATCTGGTAGACTACTTGTTCCACCATTAGCACATTGGTGT
GGCCAAAGTCTTGTACGAGATAAGGATGGAGGTATTATAGCTATTGAGGATGGATCGAAA
AGTATTCCAACTGAAACAGGGTGTTTTTATTTCAAGCCACCCA
■■Homology search results ■■ -
sp_hit_id O88413
Definition sp|O88413|TULP3_MOUSE Tubby-related protein 3 OS=Mus musculus
Align length 27
Score (bit) 30.4
E-value 8.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960143|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_J21, 5'
(643 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O88413|TULP3_MOUSE Tubby-related protein 3 OS=Mus musculus GN... 30 8.2
sp|A2BUN8|CINAL_PROM5 CinA-like protein OS=Prochlorococcus marin... 30 8.2

>sp|O88413|TULP3_MOUSE Tubby-related protein 3 OS=Mus musculus
GN=Tulp3 PE=2 SV=1
Length = 460

Score = 30.4 bits (67), Expect = 8.2
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +1

Query: 43 EDVEGGNLSSASLRLENSARSVEKSCS 123
E+ EGGNLSS S R E SA + +K+ S
Sbjct: 158 EEDEGGNLSSPSARSEESAAASQKAAS 184


>sp|A2BUN8|CINAL_PROM5 CinA-like protein OS=Prochlorococcus marinus
(strain MIT 9515) GN=P9515_02901 PE=3 SV=1
Length = 433

Score = 30.4 bits (67), Expect = 8.2
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +1

Query: 16 KRKAMFSFAEDVEGGNLSSASLRLENSARSVEKSCSWVSEKEELISSVISIAKQKV 183
KRK FAE GG LSS ++ S++ + S +S EL S+++I + ++
Sbjct: 284 KRKESLGFAESCTGGLLSSTITKVSGSSQVFKGSI--ISYSNELKQSLLNIPEDRI 337


tr_hit_id A9TVU2
Definition tr|A9TVU2|A9TVU2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 58
Score (bit) 83.2
E-value 1.0e-14
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960143|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_J21, 5'
(643 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9TVU2|A9TVU2_PHYPA Predicted protein OS=Physcomitrella paten... 83 1e-14
tr|A9S6D4|A9S6D4_PHYPA Predicted protein OS=Physcomitrella paten... 65 4e-09
tr|Q8JFV2|Q8JFV2_DANRE Putative uncharacterized protein OS=Danio... 41 0.055
tr|A4QP48|A4QP48_DANRE Si:busm1-142b24.1 protein (Fragment) OS=D... 41 0.055
tr|A0CAB4|A0CAB4_PARTE Chromosome undetermined scaffold_161, who... 39 0.27
tr|Q9LZ50|Q9LZ50_ARATH Putative uncharacterized protein T22P11_1... 39 0.36
tr|Q94A31|Q94A31_ARATH AT5g02520/T22P11_110 OS=Arabidopsis thali... 39 0.36
tr|A7RJ45|A7RJ45_NEMVE Predicted protein OS=Nematostella vectens... 37 1.4
tr|A1U540|A1U540_MARAV Putative uncharacterized protein OS=Marin... 35 5.1
tr|B1I082|B1I082_LYSSC Putative uncharacterized protein OS=Lysin... 34 6.7

>tr|A9TVU2|A9TVU2_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_97950 PE=4 SV=1
Length = 1315

Score = 83.2 bits (204), Expect = 1e-14
Identities = 39/58 (67%), Positives = 47/58 (81%)
Frame = +1

Query: 469 VSKAFGLKTSKSGRLLVPPLAHWCGQSLVRDKDGGIIAIEDGSKSIPTETGCFYFKPP 642
V +AFGLKTS+SGRLLVP LA+W QS+ DKDGGIIAI DG ++ P++TGCF F PP
Sbjct: 1199 VPEAFGLKTSRSGRLLVPALAYWRSQSIEYDKDGGIIAIFDGFQATPSDTGCFNFTPP 1256


>tr|A9S6D4|A9S6D4_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_75176 PE=4 SV=1
Length = 1232

Score = 65.1 bits (157), Expect = 4e-09
Identities = 31/42 (73%), Positives = 36/42 (85%)
Frame = +1

Query: 469 VSKAFGLKTSKSGRLLVPPLAHWCGQSLVRDKDGGIIAIEDG 594
V +AFGLKTS+SGRLLVPPLA+W Q++ DKDGGIIAI DG
Sbjct: 1189 VPEAFGLKTSRSGRLLVPPLAYWRSQTIEYDKDGGIIAIFDG 1230


>tr|Q8JFV2|Q8JFV2_DANRE Putative uncharacterized protein OS=Danio
rerio GN=si:busm1-142b24.1 PE=2 SV=2
Length = 1010

Score = 41.2 bits (95), Expect = 0.055
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +1

Query: 490 KTSKSGRLLVPPLAHWCGQSLVRDKDGGIIAIEDGSKSIPT 612
K S+SGRL+ PPL +W G +V D + + ED S S+P+
Sbjct: 461 KVSRSGRLIKPPLEYWKGGRIVMDSEMNVTVHEDYSTSVPS 501


>tr|A4QP48|A4QP48_DANRE Si:busm1-142b24.1 protein (Fragment)
OS=Danio rerio GN=si:busm1-142b24.1 PE=2 SV=1
Length = 857

Score = 41.2 bits (95), Expect = 0.055
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +1

Query: 490 KTSKSGRLLVPPLAHWCGQSLVRDKDGGIIAIEDGSKSIPT 612
K S+SGRL+ PPL +W G +V D + + ED S S+P+
Sbjct: 490 KVSRSGRLIKPPLEYWKGGRIVMDSEMNVTVHEDYSTSVPS 530


>tr|A0CAB4|A0CAB4_PARTE Chromosome undetermined scaffold_161, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00036511001 PE=4 SV=1
Length = 677

Score = 38.9 bits (89), Expect = 0.27
Identities = 32/126 (25%), Positives = 57/126 (45%)
Frame = +1

Query: 40 AEDVEGGNLSSASLRLENSARSVEKSCSWVSEKEELISSVISIAKQKVVEAKKVIAXXXX 219
AED+ +S ++ N +++S S S+ E L IS ++KVVE KKV
Sbjct: 530 AEDI----MSKENIIYTNLQSQIDESSSHFSQGESLDDDQISEYQEKVVEQKKVPNQKNF 585

Query: 220 XXXXXXXFSLPRSKRSTKPMSSEKHEAFEWKDPCLAPDSSKENCSGQSHDSNVPSSVTSA 399
F++P ++ + SS+ E ++ KDP P S E ++ + S +
Sbjct: 586 NLFQRVEFTIP-TQLTMNTQSSQ--ECWDTKDPIFLPQDSDEEMLDKNSVQRLESMLNQI 642

Query: 400 RKRMKQ 417
+ ++ Q
Sbjct: 643 QHKLPQ 648


>tr|Q9LZ50|Q9LZ50_ARATH Putative uncharacterized protein T22P11_110
OS=Arabidopsis thaliana GN=T22P11_110 PE=4 SV=1
Length = 584

Score = 38.5 bits (88), Expect = 0.36
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Frame = +1

Query: 253 RSKRSTKPMSSEKHEAFEWKDPCLAPDSSKENCSGQSHDSNVPSSV-TSARKRMKQMXXX 429
+SK+S K + S + + ++EN S + + V + K++KQ
Sbjct: 471 KSKKSEKTLQSNSNVVEPMNHFRSEAEEAEENLSWEKIKRKIDFDVEVTPEKKVKQQKTN 530

Query: 430 XXXXXXXXXXTQLVSKAFGLKTSKSGRLLVPPLAHWCGQSLVRDKDGGIIAIEDGSKS 603
+ + G K S+SGR+LV L W Q V D D +I ++DGS++
Sbjct: 531 AAS-----------TDSLGQKRSRSGRVLVSSLEFWRNQIPVYDMDRNLIQVKDGSET 577


>tr|Q94A31|Q94A31_ARATH AT5g02520/T22P11_110 OS=Arabidopsis thaliana
GN=At5g02520 PE=2 SV=1
Length = 236

Score = 38.5 bits (88), Expect = 0.36
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Frame = +1

Query: 253 RSKRSTKPMSSEKHEAFEWKDPCLAPDSSKENCSGQSHDSNVPSSV-TSARKRMKQMXXX 429
+SK+S K + S + + ++EN S + + V + K++KQ
Sbjct: 109 KSKKSEKTLQSNSNVVEPMNHFRSEAEEAEENLSWEKIKRKIDFDVEVTPEKKVKQQKTN 168

Query: 430 XXXXXXXXXXTQLVSKAFGLKTSKSGRLLVPPLAHWCGQSLVRDKDGGIIAIEDGSKS 603
+ + G K S+SGR+LV L W Q V D D +I ++DGS++
Sbjct: 169 AAS-----------TDSLGQKRSRSGRVLVSSLEFWRNQIPVYDMDRNLIQVKDGSET 215


>tr|A7RJ45|A7RJ45_NEMVE Predicted protein OS=Nematostella vectensis
GN=v1g238672 PE=4 SV=1
Length = 957

Score = 36.6 bits (83), Expect = 1.4
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +1

Query: 487 LKTSKSGRLLVPPLAHWCGQSLVRDKDGGIIAIEDGSK---SIPTETGCFYFKPP 642
L+ S+SGRL+ PP+A W GQ +V D + I+ G + S+ T +Y + P
Sbjct: 316 LRRSRSGRLIKPPMAWWRGQRVVTDGLHNLTTIDPGGEEHTSLSTGLYNYYVRLP 370


>tr|A1U540|A1U540_MARAV Putative uncharacterized protein
OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM
11845 / VT8) GN=Maqu_3035 PE=4 SV=1
Length = 486

Score = 34.7 bits (78), Expect = 5.1
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = +1

Query: 508 RLLVPPL---AHWCGQSLVRDKDGGIIAIED 591
R PPL AH CG LVRDKDG + +ED
Sbjct: 141 RGFTPPLGVWAHICGSDLVRDKDGKVYVLED 171


>tr|B1I082|B1I082_LYSSC Putative uncharacterized protein
OS=Lysinibacillus sphaericus (strain C3-41) GN=Bsph_p011
PE=4 SV=1
Length = 283

Score = 34.3 bits (77), Expect = 6.7
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +1

Query: 22 KAMFSFAEDVEGGNLSSASLRLENSARSVEKSCSWVSEKEELISSVISIAKQKVVEA 192
+A+F+F V NL + SL L S+ + CSW +KE IS++ ++K V++
Sbjct: 62 EAVFTFPFTVTLHNLKNCSLELFRSSLNTFSKCSWHFDKETAISALKGYWEEKKVDS 118