DK960143 |
Clone id |
TST39A01NGRL0006_J21 |
Library |
TST39 |
Length |
643 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_J21. 5' end sequence. |
Accession |
DK960143 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL2550Contig1 |
Sequence |
GGGGAAGCACAAAAGAAGAGGAAGGCTATGTTTAGTTTTGCAGAGGATGTGGAAGGTGGG AATCTATCTTCTGCAAGTCTGAGGCTAGAGAATTCCGCAAGAAGCGTAGAAAAATCTTGT AGCTGGGTTAGTGAAAAAGAGGAACTCATCTCCTCTGTTATAAGCATTGCAAAACAAAAA GTTGTCGAGGCTAAGAAAGTGATAGCCAAGAGGAAGGGGAAGCACAAAAGAAGAGGAAGA TTTTCACTCCCAAGGTCAAAACGATCCACTAAACCAATGTCTTCGGAAAAACATGAAGCC TTTGAATGGAAAGATCCATGTCTTGCCCCTGATAGCTCAAAAGAGAATTGTAGTGGCCAA AGTCATGATAGTAATGTCCCCTCTTCGGTGACATCAGCACGGAAAAGAATGAAGCAGATG GTTCCACCACCACTTCCTTCACCAGTAGTGTCAATATCAACACAACTTGTTTCAAAAGCT TTTGGTTTAAAAACCTCAAAATCTGGTAGACTACTTGTTCCACCATTAGCACATTGGTGT GGCCAAAGTCTTGTACGAGATAAGGATGGAGGTATTATAGCTATTGAGGATGGATCGAAA AGTATTCCAACTGAAACAGGGTGTTTTTATTTCAAGCCACCCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O88413 |
Definition |
sp|O88413|TULP3_MOUSE Tubby-related protein 3 OS=Mus musculus |
Align length |
27 |
Score (bit) |
30.4 |
E-value |
8.2 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TVU2 |
Definition |
tr|A9TVU2|A9TVU2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
58 |
Score (bit) |
83.2 |
E-value |
1.0e-14 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960143|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0006_J21, 5' (643 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TVU2|A9TVU2_PHYPA Predicted protein OS=Physcomitrella paten... 83 1e-14 tr|A9S6D4|A9S6D4_PHYPA Predicted protein OS=Physcomitrella paten... 65 4e-09 tr|Q8JFV2|Q8JFV2_DANRE Putative uncharacterized protein OS=Danio... 41 0.055 tr|A4QP48|A4QP48_DANRE Si:busm1-142b24.1 protein (Fragment) OS=D... 41 0.055 tr|A0CAB4|A0CAB4_PARTE Chromosome undetermined scaffold_161, who... 39 0.27 tr|Q9LZ50|Q9LZ50_ARATH Putative uncharacterized protein T22P11_1... 39 0.36 tr|Q94A31|Q94A31_ARATH AT5g02520/T22P11_110 OS=Arabidopsis thali... 39 0.36 tr|A7RJ45|A7RJ45_NEMVE Predicted protein OS=Nematostella vectens... 37 1.4 tr|A1U540|A1U540_MARAV Putative uncharacterized protein OS=Marin... 35 5.1 tr|B1I082|B1I082_LYSSC Putative uncharacterized protein OS=Lysin... 34 6.7
>tr|A9TVU2|A9TVU2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_97950 PE=4 SV=1 Length = 1315
Score = 83.2 bits (204), Expect = 1e-14 Identities = 39/58 (67%), Positives = 47/58 (81%) Frame = +1
Query: 469 VSKAFGLKTSKSGRLLVPPLAHWCGQSLVRDKDGGIIAIEDGSKSIPTETGCFYFKPP 642 V +AFGLKTS+SGRLLVP LA+W QS+ DKDGGIIAI DG ++ P++TGCF F PP Sbjct: 1199 VPEAFGLKTSRSGRLLVPALAYWRSQSIEYDKDGGIIAIFDGFQATPSDTGCFNFTPP 1256
>tr|A9S6D4|A9S6D4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_75176 PE=4 SV=1 Length = 1232
Score = 65.1 bits (157), Expect = 4e-09 Identities = 31/42 (73%), Positives = 36/42 (85%) Frame = +1
Query: 469 VSKAFGLKTSKSGRLLVPPLAHWCGQSLVRDKDGGIIAIEDG 594 V +AFGLKTS+SGRLLVPPLA+W Q++ DKDGGIIAI DG Sbjct: 1189 VPEAFGLKTSRSGRLLVPPLAYWRSQTIEYDKDGGIIAIFDG 1230
>tr|Q8JFV2|Q8JFV2_DANRE Putative uncharacterized protein OS=Danio rerio GN=si:busm1-142b24.1 PE=2 SV=2 Length = 1010
Score = 41.2 bits (95), Expect = 0.055 Identities = 18/41 (43%), Positives = 26/41 (63%) Frame = +1
Query: 490 KTSKSGRLLVPPLAHWCGQSLVRDKDGGIIAIEDGSKSIPT 612 K S+SGRL+ PPL +W G +V D + + ED S S+P+ Sbjct: 461 KVSRSGRLIKPPLEYWKGGRIVMDSEMNVTVHEDYSTSVPS 501
>tr|A4QP48|A4QP48_DANRE Si:busm1-142b24.1 protein (Fragment) OS=Danio rerio GN=si:busm1-142b24.1 PE=2 SV=1 Length = 857
Score = 41.2 bits (95), Expect = 0.055 Identities = 18/41 (43%), Positives = 26/41 (63%) Frame = +1
Query: 490 KTSKSGRLLVPPLAHWCGQSLVRDKDGGIIAIEDGSKSIPT 612 K S+SGRL+ PPL +W G +V D + + ED S S+P+ Sbjct: 490 KVSRSGRLIKPPLEYWKGGRIVMDSEMNVTVHEDYSTSVPS 530
>tr|A0CAB4|A0CAB4_PARTE Chromosome undetermined scaffold_161, whole genome shotgun sequence OS=Paramecium tetraurelia GN=GSPATT00036511001 PE=4 SV=1 Length = 677
Score = 38.9 bits (89), Expect = 0.27 Identities = 32/126 (25%), Positives = 57/126 (45%) Frame = +1
Query: 40 AEDVEGGNLSSASLRLENSARSVEKSCSWVSEKEELISSVISIAKQKVVEAKKVIAXXXX 219 AED+ +S ++ N +++S S S+ E L IS ++KVVE KKV Sbjct: 530 AEDI----MSKENIIYTNLQSQIDESSSHFSQGESLDDDQISEYQEKVVEQKKVPNQKNF 585
Query: 220 XXXXXXXFSLPRSKRSTKPMSSEKHEAFEWKDPCLAPDSSKENCSGQSHDSNVPSSVTSA 399 F++P ++ + SS+ E ++ KDP P S E ++ + S + Sbjct: 586 NLFQRVEFTIP-TQLTMNTQSSQ--ECWDTKDPIFLPQDSDEEMLDKNSVQRLESMLNQI 642
Query: 400 RKRMKQ 417 + ++ Q Sbjct: 643 QHKLPQ 648
>tr|Q9LZ50|Q9LZ50_ARATH Putative uncharacterized protein T22P11_110 OS=Arabidopsis thaliana GN=T22P11_110 PE=4 SV=1 Length = 584
Score = 38.5 bits (88), Expect = 0.36 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 1/118 (0%) Frame = +1
Query: 253 RSKRSTKPMSSEKHEAFEWKDPCLAPDSSKENCSGQSHDSNVPSSV-TSARKRMKQMXXX 429 +SK+S K + S + + ++EN S + + V + K++KQ Sbjct: 471 KSKKSEKTLQSNSNVVEPMNHFRSEAEEAEENLSWEKIKRKIDFDVEVTPEKKVKQQKTN 530
Query: 430 XXXXXXXXXXTQLVSKAFGLKTSKSGRLLVPPLAHWCGQSLVRDKDGGIIAIEDGSKS 603 + + G K S+SGR+LV L W Q V D D +I ++DGS++ Sbjct: 531 AAS-----------TDSLGQKRSRSGRVLVSSLEFWRNQIPVYDMDRNLIQVKDGSET 577
>tr|Q94A31|Q94A31_ARATH AT5g02520/T22P11_110 OS=Arabidopsis thaliana GN=At5g02520 PE=2 SV=1 Length = 236
Score = 38.5 bits (88), Expect = 0.36 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 1/118 (0%) Frame = +1
Query: 253 RSKRSTKPMSSEKHEAFEWKDPCLAPDSSKENCSGQSHDSNVPSSV-TSARKRMKQMXXX 429 +SK+S K + S + + ++EN S + + V + K++KQ Sbjct: 109 KSKKSEKTLQSNSNVVEPMNHFRSEAEEAEENLSWEKIKRKIDFDVEVTPEKKVKQQKTN 168
Query: 430 XXXXXXXXXXTQLVSKAFGLKTSKSGRLLVPPLAHWCGQSLVRDKDGGIIAIEDGSKS 603 + + G K S+SGR+LV L W Q V D D +I ++DGS++ Sbjct: 169 AAS-----------TDSLGQKRSRSGRVLVSSLEFWRNQIPVYDMDRNLIQVKDGSET 215
>tr|A7RJ45|A7RJ45_NEMVE Predicted protein OS=Nematostella vectensis GN=v1g238672 PE=4 SV=1 Length = 957
Score = 36.6 bits (83), Expect = 1.4 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Frame = +1
Query: 487 LKTSKSGRLLVPPLAHWCGQSLVRDKDGGIIAIEDGSK---SIPTETGCFYFKPP 642 L+ S+SGRL+ PP+A W GQ +V D + I+ G + S+ T +Y + P Sbjct: 316 LRRSRSGRLIKPPMAWWRGQRVVTDGLHNLTTIDPGGEEHTSLSTGLYNYYVRLP 370
>tr|A1U540|A1U540_MARAV Putative uncharacterized protein OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=Maqu_3035 PE=4 SV=1 Length = 486
Score = 34.7 bits (78), Expect = 5.1 Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 3/31 (9%) Frame = +1
Query: 508 RLLVPPL---AHWCGQSLVRDKDGGIIAIED 591 R PPL AH CG LVRDKDG + +ED Sbjct: 141 RGFTPPLGVWAHICGSDLVRDKDGKVYVLED 171
>tr|B1I082|B1I082_LYSSC Putative uncharacterized protein OS=Lysinibacillus sphaericus (strain C3-41) GN=Bsph_p011 PE=4 SV=1 Length = 283
Score = 34.3 bits (77), Expect = 6.7 Identities = 19/57 (33%), Positives = 32/57 (56%) Frame = +1
Query: 22 KAMFSFAEDVEGGNLSSASLRLENSARSVEKSCSWVSEKEELISSVISIAKQKVVEA 192 +A+F+F V NL + SL L S+ + CSW +KE IS++ ++K V++ Sbjct: 62 EAVFTFPFTVTLHNLKNCSLELFRSSLNTFSKCSWHFDKETAISALKGYWEEKKVDS 118
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