DK960151 |
Clone id |
TST39A01NGRL0006_K05 |
Library |
TST39 |
Length |
682 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_K05. 5' end sequence. |
Accession |
DK960151 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL930Contig1 |
Sequence |
ATTGGGTTCTTGCCCAGTTTCATTCTCTAGCTGCATGGAGGGCTGGATTCACACGTACAG AGTGCGGTTTCCGTCAGCATTTCTTCTGAAGGCTTGAGCACATTTGGGTTCCCATCTCTG TCGAATTTGGATAATTTTTGTGATCTCGGACTCACATGGTCGTTCTTTAGCTGCTCTAAG CCAGGACCTTCAAGCTCAGCTTCATTATACTTTTGGGCCTACTTCACTAATGAGAGCTGG TCTTTAATTGAAAGACATAAGCTTGCTTTTGCTTCAGGCAAAAGTTCTCAATGAACTGGT CACTTTCCATCACGAGAAGGGAGGACTGGTGGTCTTCGGGTGGCACCAATGGCTGGGCCA CTTGTATTGTCATGGGTTTTCTGTTTGGGCTTTATGCTATGCGTTCCTTGATGTGGCCAT TCCTAAAACGTTATTTGGGGAGGAGCTCGTCCAACCTCTCCTTGACGAGTAGCGAATGCG CTTCTGATGTCTCTAGTGGTGGTCTCCCCATTATTACTGAAGCTGACTTGCAAAGGTTAC TGATGCTGTTGGATGAAGAGGGGCATTCATGTGGAACTCCGTGGATACCTGTGGTTGATA AATACAGTGATACCCTATCATACCATGCAAAACTTCGTGAGCCAAAGGATGGAAGCCCTA CCGAATACCTTAGCACATCCCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5K9L9 |
Definition |
sp|Q5K9L9|ATG4_CRYNE Cysteine protease ATG4 OS=Cryptococcus neoformans |
Align length |
88 |
Score (bit) |
32.7 |
E-value |
1.8 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TZ10 |
Definition |
tr|A9TZ10|A9TZ10_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
56 |
Score (bit) |
58.9 |
E-value |
3.0e-07 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960151|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0006_K05, 5' (682 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TZ10|A9TZ10_PHYPA Predicted protein (Fragment) OS=Physcomit... 59 3e-07 tr|Q8W255|Q8W255_MEDSA Putative nodule membrane protein OS=Medic... 47 0.001 tr|Q8LAQ0|Q8LAQ0_ARATH Membrane related protein-like OS=Arabidop... 45 0.003 tr|Q9FK24|Q9FK24_ARATH Membrane related protein-like OS=Arabidop... 45 0.004 tr|Q93YV2|Q93YV2_ARATH Putative membrane related protein CP5 OS=... 42 0.036 tr|Q94C36|Q94C36_ARATH At3g13062 OS=Arabidopsis thaliana GN=At3g... 41 0.062 tr|Q8GWN9|Q8GWN9_ARATH Putative uncharacterized protein OS=Arabi... 41 0.062 tr|Q3EB74|Q3EB74_ARATH Uncharacterized protein At3g13062.2 OS=Ar... 41 0.062 tr|A7Q4I7|A7Q4I7_VITVI Chromosome chr9 scaffold_49, whole genome... 41 0.080 tr|Q9LG14|Q9LG14_ARATH F14J16.24 OS=Arabidopsis thaliana PE=4 SV=1 39 0.31 tr|A9TCG3|A9TCG3_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.31 tr|Q7F1L8|Q7F1L8_ORYSJ Putative membrane related protein CP5 OS=... 39 0.40 tr|Q0D845|Q0D845_ORYSJ Os07g0185200 protein OS=Oryza sativa subs... 39 0.40 tr|B8B7W5|B8B7W5_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.40 tr|B4G219|B4G219_MAIZE Putative uncharacterized protein OS=Zea m... 39 0.40 tr|B7FHR4|B7FHR4_MEDTR Putative uncharacterized protein (Fragmen... 37 1.2 tr|A9U359|A9U359_PHYPA Predicted protein OS=Physcomitrella paten... 37 1.2 tr|A7QJ33|A7QJ33_VITVI Chromosome chr2 scaffold_105, whole genom... 36 2.0 tr|A7P8V4|A7P8V4_VITVI Chromosome chr3 scaffold_8, whole genome ... 35 3.4 tr|Q944M2|Q944M2_ARATH AT4g14500/dl3290w (At4g14500) (Expressed ... 35 5.8 tr|O23306|O23306_ARATH Putative uncharacterized protein dl3290w ... 35 5.8 tr|Q9XIR9|Q9XIR9_ARATH Putative membrane related protein OS=Arab... 34 7.5 tr|Q9XF49|Q9XF49_ARATH Membrane related protein CP5 OS=Arabidops... 34 7.5 tr|Q9LS84|Q9LS84_ARATH Membrane related protein-like (Putative u... 34 7.5 tr|Q93ZZ1|Q93ZZ1_ARATH Putative uncharacterized protein At3g2308... 34 7.5 tr|Q8L7P8|Q8L7P8_ARATH Membrane related protein CP5, putative OS... 34 7.5 tr|Q2V3T7|Q2V3T7_ARATH Uncharacterized protein At3g23080.2 OS=Ar... 34 7.5 tr|Q0CVG4|Q0CVG4_ASPTN Putative uncharacterized protein OS=Asper... 34 7.5 tr|Q7XTJ2|Q7XTJ2_ORYSJ Os04g0119500 protein OS=Oryza sativa subs... 34 9.8 tr|Q6ZXK5|Q6ZXK5_ORYSJ Membrane related protein OS=Oryza sativa ... 34 9.8
>tr|A9TZ10|A9TZ10_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_152890 PE=4 SV=1 Length = 335
Score = 58.9 bits (141), Expect = 3e-07 Identities = 26/56 (46%), Positives = 40/56 (71%) Frame = +3
Query: 513 ITEADLQRLLMLLDEEGHSCGTPWIPVVDKYSDTLSYHAKLREPKDGSPTEYLSTS 680 +TE DL ++L +L ++ + + W V+DK +D++SY AK R+PKDG TEYLST+ Sbjct: 7 VTEEDLAQVLSVLSQDDNGENSQWEQVIDKQNDSVSYTAKRRDPKDGGATEYLSTT 62
>tr|Q8W255|Q8W255_MEDSA Putative nodule membrane protein OS=Medicago sativa PE=2 SV=1 Length = 424
Score = 47.0 bits (110), Expect = 0.001 Identities = 28/64 (43%), Positives = 37/64 (57%) Frame = +3
Query: 486 DVSSGGLPIITEADLQRLLMLLDEEGHSCGTPWIPVVDKYSDTLSYHAKLREPKDGSPTE 665 D S+G +T DL L L++E+ G PWI ++DK + T+SY A REPKDG P Sbjct: 114 DTSNG----VTINDLHHLYKLVEEKDG--GLPWIQMMDKSTPTMSYQAWRREPKDGPPQY 167
Query: 666 YLST 677 ST Sbjct: 168 RSST 171
>tr|Q8LAQ0|Q8LAQ0_ARATH Membrane related protein-like OS=Arabidopsis thaliana PE=2 SV=1 Length = 449
Score = 45.4 bits (106), Expect = 0.003 Identities = 23/54 (42%), Positives = 36/54 (66%) Frame = +3
Query: 513 ITEADLQRLLMLLDEEGHSCGTPWIPVVDKYSDTLSYHAKLREPKDGSPTEYLS 674 +TE DL+ L+ L++ + G WI ++D+++ + Y A LREPK+G PTEY S Sbjct: 129 VTELDLRHLVQLVERKDG--GQAWIQMMDRFTSGMRYQAWLREPKNG-PTEYRS 179
>tr|Q9FK24|Q9FK24_ARATH Membrane related protein-like OS=Arabidopsis thaliana PE=4 SV=1 Length = 400
Score = 45.1 bits (105), Expect = 0.004 Identities = 23/54 (42%), Positives = 36/54 (66%) Frame = +3
Query: 513 ITEADLQRLLMLLDEEGHSCGTPWIPVVDKYSDTLSYHAKLREPKDGSPTEYLS 674 +TE DL+ L+ L++ + G WI ++D+++ + Y A LREPK+G PTEY S Sbjct: 80 VTELDLRHLVQLVERKDG--GQAWIQMMDRFTPGMRYQAWLREPKNG-PTEYRS 130
>tr|Q93YV2|Q93YV2_ARATH Putative membrane related protein CP5 OS=Arabidopsis thaliana GN=At1g55960 PE=2 SV=1 Length = 403
Score = 42.0 bits (97), Expect = 0.036 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%) Frame = +3
Query: 510 IITEADLQRLLMLLDEEGHSCGTPWIPVVDKYSDTLSYHAKLREPKD-GSPTEYLSTS 680 ++++ DL+ L+ L+EE + W V+ K +D +SY AK +PKD G P +YLS + Sbjct: 82 LVSDEDLKFLIENLEEETNDSTEIWEHVIHKSNDRISYSAKRCKPKDGGGPMKYLSVT 139
>tr|Q94C36|Q94C36_ARATH At3g13062 OS=Arabidopsis thaliana GN=At3g13062 PE=2 SV=1 Length = 403
Score = 41.2 bits (95), Expect = 0.062 Identities = 21/57 (36%), Positives = 33/57 (57%) Frame = +3
Query: 510 IITEADLQRLLMLLDEEGHSCGTPWIPVVDKYSDTLSYHAKLREPKDGSPTEYLSTS 680 ++++ DL+ L+ L E W V+ K + +SY AK +P DGSP +YLST+ Sbjct: 83 LVSDEDLKGLIQKLGERSEDAEI-WEDVIKKSNPRISYTAKCCKPTDGSPMKYLSTT 138
>tr|Q8GWN9|Q8GWN9_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1 Length = 403
Score = 41.2 bits (95), Expect = 0.062 Identities = 21/57 (36%), Positives = 33/57 (57%) Frame = +3
Query: 510 IITEADLQRLLMLLDEEGHSCGTPWIPVVDKYSDTLSYHAKLREPKDGSPTEYLSTS 680 ++++ DL+ L+ L E W V+ K + +SY AK +P DGSP +YLST+ Sbjct: 83 LVSDEDLKGLIQKLGERSEDAEI-WEDVIKKSNPRISYTAKCCKPTDGSPMKYLSTT 138
>tr|Q3EB74|Q3EB74_ARATH Uncharacterized protein At3g13062.2 OS=Arabidopsis thaliana GN=At3g13062 PE=4 SV=1 Length = 440
Score = 41.2 bits (95), Expect = 0.062 Identities = 21/57 (36%), Positives = 33/57 (57%) Frame = +3
Query: 510 IITEADLQRLLMLLDEEGHSCGTPWIPVVDKYSDTLSYHAKLREPKDGSPTEYLSTS 680 ++++ DL+ L+ L E W V+ K + +SY AK +P DGSP +YLST+ Sbjct: 83 LVSDEDLKGLIQKLGERSEDAEI-WEDVIKKSNPRISYTAKCCKPTDGSPMKYLSTT 138
>tr|A7Q4I7|A7Q4I7_VITVI Chromosome chr9 scaffold_49, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00029707001 PE=4 SV=1 Length = 381
Score = 40.8 bits (94), Expect = 0.080 Identities = 32/117 (27%), Positives = 53/117 (45%) Frame = +3
Query: 330 WSSGGTNGWATCIVMGFLFGLYAMRSLMWPFLKRYXXXXXXXXXXXXXXXXXDVSSGGLP 509 W G GWAT + + + + R + + +S Sbjct: 16 WEIHGAGGWATMVAVLVIILWHLGRLIFSARFRSSSNSTPTSLSASAVNPQFRISE---- 71
Query: 510 IITEADLQRLLMLLDEEGHSCGTPWIPVVDKYSDTLSYHAKLREPKDGSPTEYLSTS 680 I+ +ADL+ L+ LDE+ + W VVDK ++ +SY+AK +PKDG P +Y+S + Sbjct: 72 IVGDADLKTLIDNLDEK-LNLNERWDNVVDKRNNFVSYNAKCCKPKDG-PLKYVSVT 126
>tr|Q9LG14|Q9LG14_ARATH F14J16.24 OS=Arabidopsis thaliana PE=4 SV=1 Length = 440
Score = 38.9 bits (89), Expect = 0.31 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Frame = +3
Query: 510 IITEADLQRLLMLLDEEGHSCGTPWIPVVDKYSDTLSYHAKLREPK--DGSPTEYLSTS 680 ++++ DL+ L+ L+EE + W V+ K +D +SY AK +PK G P +YLS + Sbjct: 82 LVSDEDLKFLIENLEEETNDSTEIWEHVIHKSNDRISYSAKRCKPKVDGGGPMKYLSVT 140
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