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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960155
Clone id TST39A01NGRL0006_K09
Library
Length 587
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_K09. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGCAGCAGGGTTTCTCGTATTGCCTTGCGAAGTTGCGAGCTCTCTGATCTGCAGAATGGC
GAGTCTGGTCCAACGCAGAGCAGCTTGGAATTGGAGAATTCGATCCCGCAGTTAGCTTCC
CCTGCTCTGCGTTGCTCGAGAGCAGGACAGAAGGATGTGTGCTCGTCTTAGCTTTTCTCT
GGAGAACCTGGATACAGGGCAACACAGCTCAAGCATACTCTGGTCCCTCCATTGACCTGC
TTCACTTGCATTCTCAACACCATTTCATCTCCCTGGGACAGTAGATAGGAGTACCGCGGC
AGATCCTGTCAGAACAAGGTATTCAATAGATCGCCTCAGAACAGGGCAGACACAAGAAAT
TGTGCAGAGTTATGTCCGACTGGGAAGTTGATGATGTAGCTGGCAGCACATGGTCATCGC
TTGACGAAGTAGCCTGGATAGAGTGCGAAAATAAAATTTCACACATTGAACCACAGCCTG
GAACGCACAGAGGCGTACCTGGTACATCCATTGAGTCGTTTCCTAAGGGAATTACTGAGT
CACCAAGACATGATCGGAGACTTCCTGATGGAAATTACCAAAGACTT
■■Homology search results ■■ -
sp_hit_id A1L3F4
Definition sp|A1L3F4|MEX3B_XENLA RNA-binding protein MEX3B OS=Xenopus laevis
Align length 110
Score (bit) 33.1
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960155|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_K09, 5'
         (587 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1L3F4|MEX3B_XENLA RNA-binding protein MEX3B OS=Xenopus laevi...    33   1.1  
sp|Q13477|MADCA_HUMAN Mucosal addressin cell adhesion molecule 1...    33   1.4  
sp|Q626H5|PLX2_CAEBR Plexin-2 OS=Caenorhabditis briggsae GN=plx-...    30   8.9  

>sp|A1L3F4|MEX3B_XENLA RNA-binding protein MEX3B OS=Xenopus laevis
           GN=mex3b PE=2 SV=1
          Length = 507

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 12/110 (10%)
 Frame = -2

Query: 568 SGSLRSCLGDSVIPLGNDSMDVPGTPLCVPGCGSM-CEILFSHSIQATSSSDDHVLPATS 392
           S  L +C G S  PL       PG  L      +M C+   S S  ++SSS      ++S
Sbjct: 384 SPPLHTCNGLSEHPLARRVRSDPGGGLSYSAYSNMACDSSSSSSSSSSSSSSSSSSSSSS 443

Query: 391 STS--------QSDITLHNFLC---LPCSEAIY*IPCSDRICRGTPIYCP 275
           S+S        +  I   + +    +PC   ++ + C++RIC      CP
Sbjct: 444 SSSGMRRKGSRECSICFESEVIAALVPCGHNLFCMECANRICEKNQPQCP 493


>sp|Q13477|MADCA_HUMAN Mucosal addressin cell adhesion molecule 1
           OS=Homo sapiens GN=MADCAM1 PE=1 SV=2
          Length = 382

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -2

Query: 565 GSLRSCLGDSVIPLGNDSMDVPGTPLCVPGCGSMCEILFSHSIQ 434
           G+++S  G SV+ + N S+   GT +CV  CG      F H++Q
Sbjct: 68  GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGR---TFQHTVQ 108


>sp|Q626H5|PLX2_CAEBR Plexin-2 OS=Caenorhabditis briggsae GN=plx-2
            PE=3 SV=1
          Length = 1773

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 393  DVAGSTWSSLDEVAWIECENKISHI-EPQPGTHRGVPGTSIESFPKGITE 539
            D   S+WSSLD  + I   +K  H+  P  GT      TS    PK I E
Sbjct: 1497 DSGQSSWSSLDRCSPIYSSSKYYHLTNPSSGTMTFKKRTSPSEIPKSIPE 1546
tr_hit_id B0CL07
Definition tr|B0CL07|B0CL07_BRUSI 4-hydroxythreonine-4-phosphate dehydrogenase OS=Brucella suis (strain ATCC 23445 / NCTC 10510)
Align length 52
Score (bit) 33.5
E-value 9.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960155|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_K09, 5'
         (587 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0CL07|B0CL07_BRUSI 4-hydroxythreonine-4-phosphate dehydrogen...    33   9.1  
tr|Q53U33|Q53U33_CANFA Mucosal addressin cell adhesion molecule-...    33   9.1  

>tr|B0CL07|B0CL07_BRUSI 4-hydroxythreonine-4-phosphate dehydrogenase
           OS=Brucella suis (strain ATCC 23445 / NCTC 10510)
           GN=pdxA PE=4 SV=1
          Length = 422

 Score = 33.5 bits (75), Expect = 9.1
 Identities = 19/52 (36%), Positives = 30/52 (57%)
 Frame = +1

Query: 226 PPLTCFTCILNTISSPWDSR*EYRGRSCQNKVFNRSPQNRADTRNCAELCPT 381
           PP+ C    L+++SSPW +R   RGR  + ++ N +   R   RNCA+  P+
Sbjct: 8   PPVRCRMTALHSLSSPWKARIPLRGR--KRRLRNSA---RNTCRNCAKRPPS 54


>tr|Q53U33|Q53U33_CANFA Mucosal addressin cell adhesion molecule-1
           OS=Canis familiaris PE=2 SV=1
          Length = 378

 Score = 33.5 bits (75), Expect = 9.1
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -2

Query: 565 GSLRSCLGDSVIPLGNDSMDVPGTPLCVPGCGSM 464
           G++RS  G SV+ + N S+   GT +CV  CG++
Sbjct: 67  GAVRSDAGSSVLSVHNASLSAAGTHVCVGSCGNL 100