DK960158 |
Clone id |
TST39A01NGRL0006_K12 |
Library |
TST39 |
Length |
683 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_K12. 5' end sequence. |
Accession |
DK960158 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
TGGAAATCGGCAAAGTCCCCACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCT GACTGCTTCGAGCCGGACTCTCACACCAGATTGCTTCGTTGCACGCTTCGTATCCTCGCC ATGGCAGCATTAGGGGCAGCTCGTGCTCGGGATCACGATTACCTCGTCAAGTTGCTGCTC ATCGGTGACAGCGGAGTTGGTAAAAGCTGCTTGCTCTTACGTTTCTCGGATGACACTTTT ACGACGAGCTTCATCACGACTATNGGGATTGATTTCAAGATCAGAACAATAGAACTTGAT GGAAAGCGGGTCAAGCTCCAGATTTGGGACACTGCAGGTCAAGAGCGCTTCCGTACCATC ACAACGGCTTACTACCGAGGGGCCATGGGCATTATTTTGGTGTACGATGTGACAGATGAG TCGTCCTTCAACAATATTCGAAACTGGATAAGGAATATTGAGCAGCATGCATCTGACAAT GTCAACAAAATTCTGGTGGGAAATAAAGCAGATATGGATGAGAGCAAGAGGGCTATTTCG ACGGCCCGTGGTCAAGCCTTAGCCAAGGAATATGGATTGAATTTTTATGAGACTAGTGCA AAAACAAACATGAACGTTGAGCAGGTTTTCTTCACCATAGCAAGGGATATAAAGCAGAGG CTTTCCGAGGCTGCCACGAGAGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q39433 |
Definition |
sp|Q39433|RB1BV_BETVU Ras-related protein RAB1BV OS=Beta vulgaris |
Align length |
177 |
Score (bit) |
284.0 |
E-value |
4.0e-76 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SKQ8 |
Definition |
tr|A9SKQ8|A9SKQ8_PHYPA Rab8/RabE-family small GTPase OS=Physcomitrella patens subsp. patens |
Align length |
177 |
Score (bit) |
284.0 |
E-value |
3.0e-75 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960158|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0006_K12, 5' (683 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SKQ8|A9SKQ8_PHYPA Rab8/RabE-family small GTPase OS=Physcomi... 284 3e-75 tr|A9SI74|A9SI74_PHYPA Rab8/RabE-family small GTPase OS=Physcomi... 284 4e-75 tr|Q8VWF9|Q8VWF9_TOBAC Ras-related protein RAB8-4 (Ras-related p... 283 6e-75 tr|B4FV50|B4FV50_MAIZE Putative uncharacterized protein OS=Zea m... 283 6e-75 tr|Q8W3J4|Q8W3J4_TOBAC Ras-related protein RAB8-1 OS=Nicotiana t... 283 7e-75 tr|Q6L502|Q6L502_ORYSJ Os05g0461300 protein OS=Oryza sativa subs... 283 7e-75 tr|B8AZ05|B8AZ05_ORYSI Putative uncharacterized protein OS=Oryza... 283 7e-75 tr|B4FB55|B4FB55_MAIZE Putative uncharacterized protein OS=Zea m... 283 7e-75 tr|Q84TA8|Q84TA8_ORYSJ Os03g0819900 protein OS=Oryza sativa subs... 283 9e-75 tr|B8AMB1|B8AMB1_ORYSI Putative uncharacterized protein OS=Oryza... 283 9e-75 tr|B4FTQ4|B4FTQ4_MAIZE Putative uncharacterized protein OS=Zea m... 283 9e-75 tr|B4FNJ6|B4FNJ6_MAIZE Putative uncharacterized protein OS=Zea m... 283 9e-75 tr|Q8W3J3|Q8W3J3_TOBAC Ras-related protein RAB8-3 OS=Nicotiana t... 282 1e-74 tr|A9SI73|A9SI73_PHYPA Rab8/RabE-family small GTPase OS=Physcomi... 282 1e-74 tr|A9PEY0|A9PEY0_POPTR Putative uncharacterized protein OS=Popul... 282 1e-74 tr|Q9SWV8|Q9SWV8_SOLLC Ethylene-responsive small GTP-binding pro... 282 2e-74 tr|Q7XHP7|Q7XHP7_ORYSJ Os07g0239400 protein OS=Oryza sativa subs... 282 2e-74 tr|B8B4T6|B8B4T6_ORYSI Putative uncharacterized protein OS=Oryza... 282 2e-74 tr|Q96362|Q96362_BRACM Small GTP-binding protein rab OS=Brassica... 281 2e-74 tr|A9P9D8|A9P9D8_POPTR Putative uncharacterized protein OS=Popul... 281 3e-74 tr|Q41023|Q41023_PEA Small GTP-binding protein OS=Pisum sativum ... 281 4e-74 tr|A7QJE0|A7QJE0_VITVI Chromosome chr8 scaffold_106, whole genom... 281 4e-74 tr|A7NZ61|A7NZ61_VITVI Chromosome chr6 scaffold_3, whole genome ... 281 4e-74 tr|A5C254|A5C254_VITVI Putative uncharacterized protein OS=Vitis... 281 4e-74 tr|Q8W3J2|Q8W3J2_TOBAC Ras-related protein RAB8-5 OS=Nicotiana t... 280 6e-74 tr|Q41024|Q41024_PEA Small GTP-binding protein OS=Pisum sativum ... 280 8e-74 tr|A7PSY7|A7PSY7_VITVI Chromosome chr8 scaffold_29, whole genome... 279 1e-73 tr|A7PIZ3|A7PIZ3_VITVI Chromosome chr13 scaffold_17, whole genom... 279 1e-73 tr|Q41022|Q41022_PEA Small GTP-binding protein OS=Pisum sativum ... 278 2e-73 tr|Q40215|Q40215_LOTJA RAB8A OS=Lotus japonicus GN=rab8A PE=2 SV=1 278 2e-73
>tr|A9SKQ8|A9SKQ8_PHYPA Rab8/RabE-family small GTPase OS=Physcomitrella patens subsp. patens GN=RabE13 PE=3 SV=1 Length = 216
Score = 284 bits (727), Expect = 3e-75 Identities = 142/177 (80%), Positives = 154/177 (87%) Frame = +1
Query: 151 DHDYLVKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRVKLQIWD 330 D+DYL+KLLLIGDSGVGKSCLLLR KIRTIELDGKR+KLQIWD Sbjct: 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
Query: 331 TAGQERFRTITTAYYRGAMGIILVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 510 TAGQERFRTITTAYYRGAMGI+LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA Sbjct: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
Query: 511 DMDESKRAISTARGQALAKEYGLNFYETSAKTNMNVEQVFFTIARDIKQRLSEAATR 681 DMDESKRA+ TA+GQALA EYG+ F+ETSAKTNMNVE VFFTIARDIKQRL+E+ ++ Sbjct: 131 DMDESKRAVPTAKGQALADEYGIKFFETSAKTNMNVEDVFFTIARDIKQRLAESDSK 187
>tr|A9SI74|A9SI74_PHYPA Rab8/RabE-family small GTPase OS=Physcomitrella patens subsp. patens GN=RabE12 PE=3 SV=1 Length = 216
Score = 284 bits (726), Expect = 4e-75 Identities = 142/177 (80%), Positives = 153/177 (86%) Frame = +1
Query: 151 DHDYLVKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRVKLQIWD 330 D+DYL+KLLLIGDSGVGKSCLLLR KIRTIELDGKR+KLQIWD Sbjct: 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
Query: 331 TAGQERFRTITTAYYRGAMGIILVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 510 TAGQERFRTITTAYYRGAMGI+LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA Sbjct: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
Query: 511 DMDESKRAISTARGQALAKEYGLNFYETSAKTNMNVEQVFFTIARDIKQRLSEAATR 681 DMDESKRA+ TA+GQALA EYG+ F+ETSAKTNMNVE VFFTIARDIKQRL+E ++ Sbjct: 131 DMDESKRAVPTAKGQALADEYGIKFFETSAKTNMNVEDVFFTIARDIKQRLAETDSK 187
>tr|Q8VWF9|Q8VWF9_TOBAC Ras-related protein RAB8-4 (Ras-related protein RAB8-2) OS=Nicotiana tabacum GN=Rab8-4 PE=2 SV=1 Length = 216
Score = 283 bits (725), Expect = 6e-75 Identities = 141/177 (79%), Positives = 155/177 (87%) Frame = +1
Query: 151 DHDYLVKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRVKLQIWD 330 D+DYL+KLLLIGDSGVGKSCLLLR KIRTIELDGKR+KLQIWD Sbjct: 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
Query: 331 TAGQERFRTITTAYYRGAMGIILVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 510 TAGQERFRTITTAYYRGAMGI+LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA Sbjct: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
Query: 511 DMDESKRAISTARGQALAKEYGLNFYETSAKTNMNVEQVFFTIARDIKQRLSEAATR 681 DMDESKRA+ T++GQALA EYG+ F+ETSAKTNMNVE+VFF+IARDIKQRLSE+ ++ Sbjct: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEVFFSIARDIKQRLSESDSK 187
>tr|B4FV50|B4FV50_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 214
Score = 283 bits (725), Expect = 6e-75 Identities = 141/177 (79%), Positives = 155/177 (87%) Frame = +1
Query: 151 DHDYLVKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRVKLQIWD 330 D+DYL+KLLLIGDSGVGKSCLLLR KIRT+ELDGKRVKLQIWD Sbjct: 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTVELDGKRVKLQIWD 70
Query: 331 TAGQERFRTITTAYYRGAMGIILVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 510 TAGQERFRTITTAYYRGAMGI+LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA Sbjct: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
Query: 511 DMDESKRAISTARGQALAKEYGLNFYETSAKTNMNVEQVFFTIARDIKQRLSEAATR 681 DMDESKRA+ T+RGQALA EYG+ F+ETSAKTN+NVEQVFF+IARDIKQRL+E+ ++ Sbjct: 131 DMDESKRAVPTSRGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAESDSK 187
>tr|Q8W3J4|Q8W3J4_TOBAC Ras-related protein RAB8-1 OS=Nicotiana tabacum GN=Rab8-1 PE=2 SV=1 Length = 216
Score = 283 bits (724), Expect = 7e-75 Identities = 141/177 (79%), Positives = 154/177 (87%) Frame = +1
Query: 151 DHDYLVKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRVKLQIWD 330 D+DYL+KLLLIGDSGVGKSCLLLR KIRTIELDGKR+KLQIWD Sbjct: 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
Query: 331 TAGQERFRTITTAYYRGAMGIILVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 510 TAGQERFRTITTAYYRGAMGI+LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA Sbjct: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
Query: 511 DMDESKRAISTARGQALAKEYGLNFYETSAKTNMNVEQVFFTIARDIKQRLSEAATR 681 DMDESKRA+ T++GQALA EYG+ F+ETSAKTNMNVE+VFF+IARDIKQRL+E+ R Sbjct: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEVFFSIARDIKQRLAESDNR 187
>tr|Q6L502|Q6L502_ORYSJ Os05g0461300 protein OS=Oryza sativa subsp. japonica GN=OJ1281_H05.12 PE=2 SV=1 Length = 216
Score = 283 bits (724), Expect = 7e-75 Identities = 141/177 (79%), Positives = 154/177 (87%) Frame = +1
Query: 151 DHDYLVKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRVKLQIWD 330 D+DYL+KLLLIGDSGVGKSCLLLR KIRTIELDGKR+KLQIWD Sbjct: 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
Query: 331 TAGQERFRTITTAYYRGAMGIILVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 510 TAGQERFRTITTAYYRGAMGI+LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA Sbjct: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
Query: 511 DMDESKRAISTARGQALAKEYGLNFYETSAKTNMNVEQVFFTIARDIKQRLSEAATR 681 DMDESKRA+ TA+GQALA EYG+ F+ETSAKTN+NVEQVFF+IARDIKQRL+E ++ Sbjct: 131 DMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAETDSK 187
>tr|B8AZ05|B8AZ05_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_20237 PE=4 SV=1 Length = 216
Score = 283 bits (724), Expect = 7e-75 Identities = 141/177 (79%), Positives = 154/177 (87%) Frame = +1
Query: 151 DHDYLVKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRVKLQIWD 330 D+DYL+KLLLIGDSGVGKSCLLLR KIRTIELDGKR+KLQIWD Sbjct: 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
Query: 331 TAGQERFRTITTAYYRGAMGIILVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 510 TAGQERFRTITTAYYRGAMGI+LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA Sbjct: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
Query: 511 DMDESKRAISTARGQALAKEYGLNFYETSAKTNMNVEQVFFTIARDIKQRLSEAATR 681 DMDESKRA+ TA+GQALA EYG+ F+ETSAKTN+NVEQVFF+IARDIKQRL+E ++ Sbjct: 131 DMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAETDSK 187
>tr|B4FB55|B4FB55_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 215
Score = 283 bits (724), Expect = 7e-75 Identities = 141/177 (79%), Positives = 154/177 (87%) Frame = +1
Query: 151 DHDYLVKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRVKLQIWD 330 D+DYL+KLLLIGDSGVGKSCLLLR KIRTIELDGKR+KLQIWD Sbjct: 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
Query: 331 TAGQERFRTITTAYYRGAMGIILVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 510 TAGQERFRTITTAYYRGAMGI+LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA Sbjct: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
Query: 511 DMDESKRAISTARGQALAKEYGLNFYETSAKTNMNVEQVFFTIARDIKQRLSEAATR 681 DMDESKRA+ TA+GQALA EYG+ F+ETSAKTN+NVEQVFF+IARDIKQRL+E ++ Sbjct: 131 DMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAETDSK 187
>tr|Q84TA8|Q84TA8_ORYSJ Os03g0819900 protein OS=Oryza sativa subsp. japonica GN=OJ1754_E06.16 PE=2 SV=1 Length = 214
Score = 283 bits (723), Expect = 9e-75 Identities = 140/177 (79%), Positives = 154/177 (87%) Frame = +1
Query: 151 DHDYLVKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRVKLQIWD 330 D+DYL+KLLLIGDSGVGKSCLLLR KIRT+ELDGKR+KLQIWD Sbjct: 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTVELDGKRIKLQIWD 70
Query: 331 TAGQERFRTITTAYYRGAMGIILVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 510 TAGQERFRTITTAYYRGAMGI+LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA Sbjct: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
Query: 511 DMDESKRAISTARGQALAKEYGLNFYETSAKTNMNVEQVFFTIARDIKQRLSEAATR 681 DMDESKRA+ T++GQALA EYG+ F+ETSAKTN+NVEQVFF+IARDIKQRLSE ++ Sbjct: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLSETDSK 187
>tr|B8AMB1|B8AMB1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_14091 PE=4 SV=1 Length = 214
Score = 283 bits (723), Expect = 9e-75 Identities = 140/177 (79%), Positives = 154/177 (87%) Frame = +1
Query: 151 DHDYLVKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRVKLQIWD 330 D+DYL+KLLLIGDSGVGKSCLLLR KIRT+ELDGKR+KLQIWD Sbjct: 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTVELDGKRIKLQIWD 70
Query: 331 TAGQERFRTITTAYYRGAMGIILVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 510 TAGQERFRTITTAYYRGAMGI+LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA Sbjct: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
Query: 511 DMDESKRAISTARGQALAKEYGLNFYETSAKTNMNVEQVFFTIARDIKQRLSEAATR 681 DMDESKRA+ T++GQALA EYG+ F+ETSAKTN+NVEQVFF+IARDIKQRLSE ++ Sbjct: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLSETDSK 187
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