DK960162 |
Clone id |
TST39A01NGRL0006_K16 |
Library |
TST39 |
Length |
728 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_K16. 5' end sequence. |
Accession |
DK960162 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL202Contig1 |
Sequence |
GCAGGCCTCTCCATCCTCGGCACCATGTTGATTTCTAAGAAGAATCGAGTGGAAGTTTAC AAGTATCTTTTCAAAGAGGGGGTTCTCTATGCCAAAAAAGACTTCAATCTGCCAAAGCAT CCAGACATTGATGTTCCAAATCTGCAAGTGATCAAGCTCATGCAGAGCTTCAAGTCTAAG GAATATGTCAAAGAGAATTTTGCTTGGATGCACTACTACTGGTATTTGACCAATGATGGT ATTGAGCACCTTAGAACATATCTCAATTTGCCCTCAGAGATTGTGCCCGCCACACTCAAG AAGTCTGCCAGGCCTCCTGGCAGGCCGATGGGTGGACCTCCCGGTGACCGGCCCCGTGGC CCCCCTCGAGACGGTGACAGGCCAAGGTTTGGTGACAGAGATGGTTATCGTGGTGGCCCT CCAAGGGGTCCAGGTGGTTTTGGTGACAAAGGTGGTGCCCCTGAAGGTTTTCAGCCCTCT TTCAGGAGTGGTGCTGGTGGGCGACCTGGCTTCGGACGAGGTGGTGGTGGGTTTGGTGCA GGCCAACCCTCTCTTACGGAGTAGAGATTGCTCTCATAGAATACAGAGAAGTTGAGCGGC AATTGTTCAGATTGCATTTTAAGACTAGTGTATCACGGGAAATTTTTCAGAGTTAATTTA AATGCATGTACCAAACCCTCTAATATTGGAGCTTTGCAAAGTTTTTGGTAAAAAAAAAAA AAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9AYP4 |
Definition |
sp|Q9AYP4|RS10_ORYSJ 40S ribosomal protein S10 OS=Oryza sativa subsp. japonica |
Align length |
95 |
Score (bit) |
171.0 |
E-value |
4.0e-42 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960162|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0006_K16, 5' (709 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9AYP4|RS10_ORYSJ 40S ribosomal protein S10 OS=Oryza sativa s... 171 4e-42 sp|Q9SW09|RS101_ARATH 40S ribosomal protein S10-1 OS=Arabidopsis... 169 1e-41 sp|Q9LTF2|RS103_ARATH 40S ribosomal protein S10-3 OS=Arabidopsis... 166 9e-41 sp|Q9FFS8|RS102_ARATH 40S ribosomal protein S10-2 OS=Arabidopsis... 160 5e-39 sp|Q962R9|RS10_SPOFR 40S ribosomal protein S10 OS=Spodoptera fru... 145 2e-34 sp|O77302|RS10_LUMRU 40S ribosomal protein S10 OS=Lumbricus rube... 144 5e-34 sp|P63326|RS10_RAT 40S ribosomal protein S10 OS=Rattus norvegicu... 137 6e-32 sp|P63325|RS10_MOUSE 40S ribosomal protein S10 OS=Mus musculus G... 137 6e-32 sp|P46783|RS10_HUMAN 40S ribosomal protein S10 OS=Homo sapiens G... 137 6e-32 sp|Q3T0F4|RS10_BOVIN 40S ribosomal protein S10 OS=Bos taurus GN=... 137 6e-32 sp|Q07254|RS10_XENLA 40S ribosomal protein S10 OS=Xenopus laevis... 134 6e-31 sp|Q9VWG3|RS10B_DROME 40S ribosomal protein S10b OS=Drosophila m... 132 2e-30 sp|Q90YR4|RS10_ICTPU 40S ribosomal protein S10 OS=Ictalurus punc... 130 9e-30 sp|Q9VB14|RS10A_DROME 40S ribosomal protein S10a OS=Drosophila m... 127 8e-29 sp|Q9NQ39|RS10L_HUMAN Putative 40S ribosomal protein S10-like pr... 126 1e-28 sp|O13614|RS10B_SCHPO 40S ribosomal protein S10-B OS=Schizosacch... 119 2e-26 sp|O14112|RS10A_SCHPO 40S ribosomal protein S10-A OS=Schizosacch... 119 2e-26 sp|O77082|RS10_DICDI 40S ribosomal protein S10 OS=Dictyostelium ... 118 3e-26 sp|Q08745|RS10A_YEAST 40S ribosomal protein S10-A OS=Saccharomyc... 112 2e-24 sp|P46784|RS10B_YEAST 40S ribosomal protein S10-B OS=Saccharomyc... 112 3e-24 sp|P30427|PLEC1_RAT Plectin-1 OS=Rattus norvegicus GN=Plec1 PE=1... 100 1e-20 sp|Q9QXS1|PLEC1_MOUSE Plectin-1 OS=Mus musculus GN=Plec1 PE=1 SV=2 100 1e-20 sp|Q15149|PLEC1_HUMAN Plectin-1 OS=Homo sapiens GN=PLEC1 PE=1 SV=3 99 2e-20 sp|P04929|HRPX_PLALO Histidine-rich glycoprotein OS=Plasmodium l... 40 0.010 sp|Q8MP30|Y7791_DICDI Uncharacterized histidine-rich protein DDB... 37 0.081 sp|Q91ZR5|CTSR1_MOUSE Cation channel sperm-associated protein 1 ... 36 0.18 sp|Q8C145|S39A6_MOUSE Zinc transporter ZIP6 OS=Mus musculus GN=S... 36 0.23 sp|P09346|KNOB_PLAFG Knob-associated histidine-rich protein OS=P... 36 0.23 sp|P13817|KNOB_PLAFA Knob-associated histidine-rich protein (Fra... 36 0.23 sp|P06719|KNOB_PLAFN Knob-associated histidine-rich protein OS=P... 35 0.31
>sp|Q9AYP4|RS10_ORYSJ 40S ribosomal protein S10 OS=Oryza sativa subsp. japonica GN=RPS10 PE=2 SV=2 Length = 183
Score = 171 bits (433), Expect = 4e-42 Identities = 80/95 (84%), Positives = 87/95 (91%) Frame = +1
Query: 25 MLISKKNRVEVYKYLFKEGVLYAKKDFNLPKHPDIDVPNLQVIKLMQSFKSKEYVKENFA 204 M+I KKNR E+ KYLF+EGVLYAKKD+NL KHP IDVPNLQVIKLMQSFKSKEYV+E F+ Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFS 60
Query: 205 WMHYYWYLTNDGIEHLRTYLNLPSEIVPATLKKSA 309 W +YYWYLTNDGIEHLR YLNLPSEIVPATLKKSA Sbjct: 61 WQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSA 95
>sp|Q9SW09|RS101_ARATH 40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2 SV=1 Length = 177
Score = 169 bits (429), Expect = 1e-41 Identities = 79/95 (83%), Positives = 88/95 (92%) Frame = +1
Query: 25 MLISKKNRVEVYKYLFKEGVLYAKKDFNLPKHPDIDVPNLQVIKLMQSFKSKEYVKENFA 204 M+IS+ NR E+ KYLFKEGV +AKKDFNLPKHP IDVPNLQVIKLMQSFKSKEYV+E FA Sbjct: 1 MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60
Query: 205 WMHYYWYLTNDGIEHLRTYLNLPSEIVPATLKKSA 309 WMHYYW+LTN+GIE LRTYLNLPS++VPATLKKSA Sbjct: 61 WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSA 95
>sp|Q9LTF2|RS103_ARATH 40S ribosomal protein S10-3 OS=Arabidopsis thaliana GN=RPS10C PE=2 SV=2 Length = 179
Score = 166 bits (421), Expect = 9e-41 Identities = 78/95 (82%), Positives = 87/95 (91%) Frame = +1
Query: 25 MLISKKNRVEVYKYLFKEGVLYAKKDFNLPKHPDIDVPNLQVIKLMQSFKSKEYVKENFA 204 M+IS+ NR E+ KYLFKEGV +AKKDFNL KHP IDVPNLQVIKLMQSFKSKEYV+E FA Sbjct: 1 MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60
Query: 205 WMHYYWYLTNDGIEHLRTYLNLPSEIVPATLKKSA 309 WMHYYW+LTN+GIE LRTYLNLPS++VPATLKKSA Sbjct: 61 WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSA 95
>sp|Q9FFS8|RS102_ARATH 40S ribosomal protein S10-2 OS=Arabidopsis thaliana GN=RPS10B PE=2 SV=1 Length = 180
Score = 160 bits (406), Expect = 5e-39 Identities = 77/94 (81%), Positives = 87/94 (92%), Gaps = 1/94 (1%) Frame = +1
Query: 25 MLISKKNRVEVYKYLFKEGVLYAKKDFNLPKHPDID-VPNLQVIKLMQSFKSKEYVKENF 201 M+IS+ NR E+ KYLFKEGVL+AKKDFNLP+HP I+ VPNLQVIKLMQSFKSKEYV+E F Sbjct: 1 MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60
Query: 202 AWMHYYWYLTNDGIEHLRTYLNLPSEIVPATLKK 303 AWMHYYW+LTN+GI+ LRTYLNLPSEIVPATLKK Sbjct: 61 AWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKK 94
>sp|Q962R9|RS10_SPOFR 40S ribosomal protein S10 OS=Spodoptera frugiperda GN=RpS10 PE=2 SV=1 Length = 158
Score = 145 bits (367), Expect = 2e-34 Identities = 66/95 (69%), Positives = 83/95 (87%), Gaps = 1/95 (1%) Frame = +1
Query: 25 MLISKKNRVEVYKYLFKEGVLYAKKDFNLPKHPDID-VPNLQVIKLMQSFKSKEYVKENF 201 ML+ K+NRV +Y+YLFKEGV+ AKKD++ PKHPD++ +PNLQVIK MQS KS+ YVKE F Sbjct: 1 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 60
Query: 202 AWMHYYWYLTNDGIEHLRTYLNLPSEIVPATLKKS 306 AW H+YWYLTN+GIE+LR +L+LP EIVPATLK+S Sbjct: 61 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRS 95
>sp|O77302|RS10_LUMRU 40S ribosomal protein S10 OS=Lumbricus rubellus GN=RPS10 PE=2 SV=1 Length = 156
Score = 144 bits (363), Expect = 5e-34 Identities = 66/93 (70%), Positives = 79/93 (84%) Frame = +1
Query: 25 MLISKKNRVEVYKYLFKEGVLYAKKDFNLPKHPDIDVPNLQVIKLMQSFKSKEYVKENFA 204 ML+SKKNRV +Y+YLFKEGVL AKKDF+LPKH +IDVPNL VI+ MQS S+ YVKE F Sbjct: 1 MLMSKKNRVMIYEYLFKEGVLVAKKDFHLPKHGEIDVPNLHVIRAMQSLVSRGYVKEQFC 60
Query: 205 WMHYYWYLTNDGIEHLRTYLNLPSEIVPATLKK 303 W HYYWYL N+GI++LR +L+LP EIVPATLK+ Sbjct: 61 WRHYYWYLQNEGIQYLRDFLHLPPEIVPATLKR 93
>sp|P63326|RS10_RAT 40S ribosomal protein S10 OS=Rattus norvegicus GN=Rps10 PE=2 SV=1 Length = 165
Score = 137 bits (345), Expect = 6e-32 Identities = 62/97 (63%), Positives = 81/97 (83%), Gaps = 3/97 (3%) Frame = +1
Query: 25 MLISKKNRVEVYKYLFKEGVLYAKKDFNLPKHPDI---DVPNLQVIKLMQSFKSKEYVKE 195 ML+ KKNR+ +Y+ LFKEGV+ AKKD ++PKHP++ +VPNL V+K MQS KS+ YVKE Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 196 NFAWMHYYWYLTNDGIEHLRTYLNLPSEIVPATLKKS 306 FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97
>sp|P63325|RS10_MOUSE 40S ribosomal protein S10 OS=Mus musculus GN=Rps10 PE=1 SV=1 Length = 165
Score = 137 bits (345), Expect = 6e-32 Identities = 62/97 (63%), Positives = 81/97 (83%), Gaps = 3/97 (3%) Frame = +1
Query: 25 MLISKKNRVEVYKYLFKEGVLYAKKDFNLPKHPDI---DVPNLQVIKLMQSFKSKEYVKE 195 ML+ KKNR+ +Y+ LFKEGV+ AKKD ++PKHP++ +VPNL V+K MQS KS+ YVKE Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 196 NFAWMHYYWYLTNDGIEHLRTYLNLPSEIVPATLKKS 306 FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97
>sp|P46783|RS10_HUMAN 40S ribosomal protein S10 OS=Homo sapiens GN=RPS10 PE=1 SV=1 Length = 165
Score = 137 bits (345), Expect = 6e-32 Identities = 62/97 (63%), Positives = 81/97 (83%), Gaps = 3/97 (3%) Frame = +1
Query: 25 MLISKKNRVEVYKYLFKEGVLYAKKDFNLPKHPDI---DVPNLQVIKLMQSFKSKEYVKE 195 ML+ KKNR+ +Y+ LFKEGV+ AKKD ++PKHP++ +VPNL V+K MQS KS+ YVKE Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 196 NFAWMHYYWYLTNDGIEHLRTYLNLPSEIVPATLKKS 306 FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97
>sp|Q3T0F4|RS10_BOVIN 40S ribosomal protein S10 OS=Bos taurus GN=RPS10 PE=2 SV=1 Length = 165
Score = 137 bits (345), Expect = 6e-32 Identities = 62/97 (63%), Positives = 81/97 (83%), Gaps = 3/97 (3%) Frame = +1
Query: 25 MLISKKNRVEVYKYLFKEGVLYAKKDFNLPKHPDI---DVPNLQVIKLMQSFKSKEYVKE 195 ML+ KKNR+ +Y+ LFKEGV+ AKKD ++PKHP++ +VPNL V+K MQS KS+ YVKE Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 196 NFAWMHYYWYLTNDGIEHLRTYLNLPSEIVPATLKKS 306 FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9U1Y5 |
Definition |
tr|A9U1Y5|A9U1Y5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
95 |
Score (bit) |
190.0 |
E-value |
7.0e-47 |
Report |
|