DK960178 |
Clone id |
TST39A01NGRL0006_L10 |
Library |
TST39 |
Length |
664 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_L10. 5' end sequence. |
Accession |
DK960178 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL3461Contig1 |
Sequence |
GAGATCATTTTCTGAGATGGTGTTAACCGCACCCTCATTCCACGTCATCTCTCTCACAGA GACGGATCCTCTTCCGCCTGCTTCACAGGTTAGCATCCCGAAACCTTCCTTTTCTTTCAA AGTGAAAGCTTTCCGCAGGAAATCTGGAGCTGAGCTTTCTGCCAGGGCCTCTCTTGTCAG CAGAGCTCATTTACTCACACAGAGCAGCAGCAGTGAAACTCTCAGAGAATCGAATTCCTC TGAGGAAAAGAAATTCGATAAGGGCTTCAAAGGCTTGCGATCAAACGGTCGTCTTAGGCA GCAGTTGCATGGCGCCCAAGATTTACATGATAACCAGCAACAAGCTTTGCAAAGATTGAG AGGTTTCTCTGCTCTACGTAAGGATACACCTTCCAAAAAAGTTGTCAGTTCGGTGCCGCA GAGGCGTCACCTGTATTTGGATCCACCTGCCCATCTTCAGCAAGCCCCACGTACAGAAGA TTTAGAATCTTTTAATATTGAGAAAGATCGCGCCAGTACCTCCAATGGTTTTGCAGGCCA AAATGCGCAACCTGCAAAGACAACAGGAAAAAATGCTCAATCCATAAAGCGTCGGAGTGG TAGGAACTCATCAAGAGGGTTTGATGTTTTGGATGACCTAATGTCGGCTCAGGGTCGCAA CTCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q90WJ3 |
Definition |
sp|Q90WJ3|PAXI1_XENLA PAX-interacting protein 1 OS=Xenopus laevis |
Align length |
71 |
Score (bit) |
32.3 |
E-value |
2.3 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B2ATW7 |
Definition |
tr|B2ATW7|B2ATW7_PODAN Predicted CDS Pa_1_17200 OS=Podospora anserina |
Align length |
140 |
Score (bit) |
40.0 |
E-value |
0.13 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960178|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0006_L10, 5' (664 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B2ATW7|B2ATW7_PODAN Predicted CDS Pa_1_17200 OS=Podospora ans... 40 0.13 tr|A6D7B8|A6D7B8_9VIBR DNA-binding transcriptional activator OS=... 35 3.2 tr|A3LTF0|A3LTF0_PICST Component of SWI/SNF global transcription... 35 3.2 tr|Q99MV3|Q99MV3_MOUSE Testis protein TEX15 OS=Mus musculus GN=T... 35 5.5 tr|Q3UPQ6|Q3UPQ6_MOUSE Putative uncharacterized protein (Fragmen... 35 5.5 tr|O97005|O97005_LEIMA Putative uncharacterized protein L7610.03... 34 7.1 tr|B3FIY5|B3FIY5_9CAUD Putative uncharacterized protein OS=Pseud... 34 9.2 tr|A6G8W7|A6G8W7_9DELT Putative uncharacterized protein OS=Plesi... 34 9.3 tr|Q5SNG7|Q5SNG7_ORYSJ cDNA clone:J023020E22, full insert sequen... 34 9.3 tr|B4GGH0|B4GGH0_DROPE GL17138 OS=Drosophila persimilis GN=GL171... 34 9.3
>tr|B2ATW7|B2ATW7_PODAN Predicted CDS Pa_1_17200 OS=Podospora anserina PE=4 SV=1 Length = 1283
Score = 40.0 bits (92), Expect = 0.13 Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 24/140 (17%) Frame = +2
Query: 317 QDLHDNQQQALQRL----RGFSALRKDTPSKKVVSSVPQRRHLYLDPPA-HLQQAPRTED 481 QD H QQ A QR R A+ D + ++S P+ +Y PP + QQAP Sbjct: 155 QDYHSPQQTATQRFYQGGRPAPAMNADPYRSQSLASYPRGPPMYQPPPQQYQQQAPSANA 214
Query: 482 LESFNIE-------------------KDRASTSNGFAGQNAQPAKTTGKNAQSIKRRSGR 604 L + +DR++T G+ + +T +R +GR Sbjct: 215 LRNAQYSNQHSARTTAQGRVVPERHFEDRSNTMTGYPSHDRDSHQTMSGRVIPNRRPAGR 274
Query: 605 NSSRGFDVLDDLMSAQGRNS 664 +SS G V D ++ +S Sbjct: 275 DSSGGHSVTADYLANSSHSS 294
>tr|A6D7B8|A6D7B8_9VIBR DNA-binding transcriptional activator OS=Vibrio shilonii AK1 GN=VSAK1_04510 PE=4 SV=1 Length = 482
Score = 35.4 bits (80), Expect = 3.2 Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Frame = +2
Query: 338 QQALQRLRGFSALRKDTPSKKVVSSVPQRRHLY-LDPPAHLQQAPRTEDLESFNIEKDRA 514 +Q + LRG L+ T + + ++P++ +L+ L+ AH+++AP+ +E +IE+ + Sbjct: 73 RQVISSLRG--QLKDKTRPYRTIKTIPKKGYLFDLEVIAHIEKAPQVVAVEVDDIEEPQF 130
Query: 515 STSNGFAGQN 544 S +G G N Sbjct: 131 SEKSGHKGGN 140
>tr|A3LTF0|A3LTF0_PICST Component of SWI/SNF global transcription activator complex OS=Pichia stipitis GN=SNF2 PE=4 SV=2 Length = 1566
Score = 35.4 bits (80), Expect = 3.2 Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 22/161 (13%) Frame = +2
Query: 248 KKFDKGFKGLRSNGRLRQQLHGAQDLHDNQQQALQRLRGFS---------ALRKDTPS-- 394 K F++ + L+ N LRQQ Q QQQ Q+ + AL + S Sbjct: 42 KYFNQQQQMLQQNPNLRQQQQQQQQQQQQQQQQQQQQQQQQLQNQNQQNPALNPQSSSQL 101
Query: 395 --KKVVSSVPQRRHLYLDP---PAHLQQA-PRTEDLESFNIEKDR-----ASTSNGFAGQ 541 +++ S+PQ++H + P P+H QQ P+++ L + + T +G G Sbjct: 102 NNQQIPQSLPQQQHQGIHPQGTPSHQQQQFPQSQSLNQMQFNNNNNTSNVSGTGSGSQGS 161
Query: 542 NAQPAKTTGKNAQSIKRRSGRNSSRGFDVLDDLMSAQGRNS 664 +++ A TT + Q +K + F L L++ G N+ Sbjct: 162 SSESAFTT-QQFQLVKSQ--------FQALKYLLNKPGANN 193
>tr|Q99MV3|Q99MV3_MOUSE Testis protein TEX15 OS=Mus musculus GN=Tex15 PE=2 SV=1 Length = 2785
Score = 34.7 bits (78), Expect = 5.5 Identities = 13/45 (28%), Positives = 25/45 (55%) Frame = +2
Query: 497 IEKDRASTSNGFAGQNAQPAKTTGKNAQSIKRRSGRNSSRGFDVL 631 + + T N F G+N +PA+T ++++++R N RG + L Sbjct: 646 LNSEECFTFNSFRGKNGKPAETASSESEAVEQRHAPNDQRGLEHL 690
>tr|Q3UPQ6|Q3UPQ6_MOUSE Putative uncharacterized protein (Fragment) OS=Mus musculus GN=Tex15 PE=2 SV=1 Length = 1255
Score = 34.7 bits (78), Expect = 5.5 Identities = 13/45 (28%), Positives = 25/45 (55%) Frame = +2
Query: 497 IEKDRASTSNGFAGQNAQPAKTTGKNAQSIKRRSGRNSSRGFDVL 631 + + T N F G+N +PA+T ++++++R N RG + L Sbjct: 896 LNSEECFTFNSFRGKNGKPAETASSESEAVEQRHAPNDQRGLEHL 940
>tr|O97005|O97005_LEIMA Putative uncharacterized protein L7610.03 OS=Leishmania major GN=L7610.03 PE=4 SV=1 Length = 1279
Score = 34.3 bits (77), Expect = 7.1 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 5/83 (6%) Frame = +2
Query: 329 DNQQQALQRLRGFSALRKDTPSKKVV-SSVPQRRHLYLDPPAHLQ----QAPRTEDLESF 493 D + L R D PS+ ++PQ+RH PPAH +AP +D E Sbjct: 855 DRPRVHLHNSRAAENALDDEPSRSAQRGALPQQRHTQTAPPAHRSGAALEAP-LDDYEDG 913
Query: 494 NIEKDRASTSNGFAGQNAQPAKT 562 N + S AG +AQP+ + Sbjct: 914 NAPYQEEARSEVIAGSDAQPSSS 936
>tr|B3FIY5|B3FIY5_9CAUD Putative uncharacterized protein OS=Pseudomonas phage 201phi2-1 GN=201phi2-1p122 PE=4 SV=1 Length = 274
Score = 33.9 bits (76), Expect = 9.2 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -3
Query: 614 LMSSYHSDALWIEHFFLLSLQVAHFGLQNHWRYW 513 L++ Y SD LW EHF L L +H G W W Sbjct: 164 LLTHYPSDLLWKEHFNRLLLLESHTGKLKPWNMW 197
>tr|A6G8W7|A6G8W7_9DELT Putative uncharacterized protein OS=Plesiocystis pacifica SIR-1 GN=PPSIR1_13910 PE=4 SV=1 Length = 481
Score = 33.9 bits (76), Expect = 9.3 Identities = 22/57 (38%), Positives = 32/57 (56%) Frame = +2
Query: 296 RQQLHGAQDLHDNQQQALQRLRGFSALRKDTPSKKVVSSVPQRRHLYLDPPAHLQQA 466 R+ + + + D+Q Q L F+ALR +TPS++ SV RR LY D A L+ A Sbjct: 189 RRYIVAIRGVLDDQAQPLAASPAFAALRDETPSEE--PSVEARRGLYADIFARLEDA 243
>tr|Q5SNG7|Q5SNG7_ORYSJ cDNA clone:J023020E22, full insert sequence OS=Oryza sativa subsp. japonica GN=P0671B11.34 PE=2 SV=1 Length = 373
Score = 33.9 bits (76), Expect = 9.3 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -2
Query: 351 CKACCWLSCKSWAPCNCCLR 292 C CCW +C SW+ C CC R Sbjct: 337 CCGCCWFAC-SWSSCCCCCR 355
>tr|B4GGH0|B4GGH0_DROPE GL17138 OS=Drosophila persimilis GN=GL17138 PE=4 SV=1 Length = 1197
Score = 33.9 bits (76), Expect = 9.3 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Frame = +2
Query: 392 SKKVVSSVPQR-RHLYLDPPAHLQQA-PRTEDLESFNIEKDRASTSNGFAGQNAQPAKTT 565 S+KV+ ++P R HL+ AHL A P E+LE + DR NGF + + Sbjct: 865 SRKVLEAIPARLSHLW----AHLSTALPLEEELEISHTVYDRL---NGFRKEGDLKKRLA 917
Query: 566 GKNAQSIKRRSGRNSSR 616 GKN Q +++R ++R Sbjct: 918 GKNPQLVQQRQKEAAAR 934
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