DK960196 |
Clone id |
TST39A01NGRL0006_M05 |
Library |
TST39 |
Length |
675 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_M05. 5' end sequence. |
Accession |
DK960196 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
CAGCGTCAGTTCTGATTTGCTTGATCGTGCCGAGATATTCTATTACATGATTCGTCAGTA GCTGCTTCCTTTGTGTTGGGAGGTCCCCGTCTATGCAATTGGAGCGGCATTGCTGGGTGC AATCTGAAGGGTTTCCACCCTTAGACCGTGATTTTCGCATCCGCGGGTGTTGTTTCTGGC ATAGTGGAGGTTTTAAATTTTGTTTTGTCGGAGGAGCTCATACATCGTGTCTGCAAAACA ACGTTGCTGGAGGTTTTCAATTGGTCAAGGAGCTCAGCGACCCATCAGGGTTTTGTCAAT ATTCTGCACAAAGGTTGCCGATATCCCAACCTGGTCTGTAAAAGTTGCTAGCGAGTTTCA GGGTTTTGTCAATATTCTGCACAAAGGTTGCTGATATCCCAACCGGGTCTGTAAAAGTTG CTAGCGAGTTTCTTTTAGAAGTTATGGTCAACACTTGATGGCAATTTCAGGATCAAGAGA GGGAAAGTCCGTCTGCAGCATTTTTCCTGGCCTTCCTGATGATTTGGCTCGTCTTTGCCT TGCTTTTGTGCCTCTGTGTCACCATGGGAGATTAAGAGTTATATGTAAAGCTTGGCGTGC AGCATATTCATCTAGATTTCTTCTCAACATTCGCAGCCAGTGGAGAAAGACAGAAGAGTT CTTGTGTATATTCAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9M1Y1 |
Definition |
sp|Q9M1Y1|FBK76_ARATH F-box/Kelch-repeat protein At3g59940 OS=Arabidopsis thaliana |
Align length |
71 |
Score (bit) |
55.1 |
E-value |
3.0e-07 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SY79 |
Definition |
tr|A9SY79|A9SY79_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
72 |
Score (bit) |
60.1 |
E-value |
1.0e-07 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960196|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0006_M05, 5' (675 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SY79|A9SY79_PHYPA Predicted protein (Fragment) OS=Physcomit... 60 1e-07 tr|A9S9R5|A9S9R5_PHYPA Predicted protein OS=Physcomitrella paten... 59 4e-07 tr|A9S4B0|A9S4B0_PHYPA Predicted protein (Fragment) OS=Physcomit... 58 6e-07 tr|A9SVB6|A9SVB6_PHYPA Predicted protein OS=Physcomitrella paten... 56 2e-06 tr|A9RGV2|A9RGV2_PHYPA Predicted protein OS=Physcomitrella paten... 56 2e-06 tr|Q7XES2|Q7XES2_ORYSJ Os10g0409900 protein OS=Oryza sativa subs... 55 4e-06 tr|B8BGS5|B8BGS5_ORYSI Putative uncharacterized protein OS=Oryza... 55 4e-06 tr|A3C4N2|A3C4N2_ORYSJ Putative uncharacterized protein OS=Oryza... 55 4e-06 tr|A0SHK4|A0SHK4_ORYRU Kelch-motif containing protein (Fragment)... 55 4e-06 tr|A0SHK1|A0SHK1_ORYRU Kelch-motif containing protein (Fragment)... 55 4e-06 tr|A0SHJ8|A0SHJ8_ORYRU Kelch-motif containing protein (Fragment)... 55 4e-06 tr|A0SHJ6|A0SHJ6_ORYRU Kelch-motif containing protein (Fragment)... 55 4e-06 tr|A0SHJ5|A0SHJ5_ORYRU Kelch-motif containing protein (Fragment)... 55 4e-06 tr|A0SHJ4|A0SHJ4_ORYSI Kelch-motif containing protein (Fragment)... 55 4e-06 tr|A0SHJ3|A0SHJ3_ORYSI Kelch-motif containing protein (Fragment)... 55 4e-06 tr|A0SHJ1|A0SHJ1_ORYSI Kelch-motif containing protein (Fragment)... 55 4e-06 tr|A0SHJ0|A0SHJ0_ORYSJ Kelch-motif containing protein (Fragment)... 55 4e-06 tr|A0SHI9|A0SHI9_ORYSJ Kelch-motif containing protein (Fragment)... 55 4e-06 tr|A0SHI8|A0SHI8_ORYSJ Kelch-motif containing protein (Fragment)... 55 4e-06 tr|A0SHI7|A0SHI7_ORYSJ Kelch-motif containing protein (Fragment)... 55 4e-06 tr|A0SHI5|A0SHI5_ORYNI Kelch-motif containing protein (Fragment)... 55 4e-06 tr|A0SHI3|A0SHI3_9ORYZ Kelch-motif containing protein (Fragment)... 55 4e-06 tr|A0SHI1|A0SHI1_ORYLO Kelch-motif containing protein (Fragment)... 55 4e-06 tr|A0SHI0|A0SHI0_9ORYZ Kelch-motif containing protein (Fragment)... 55 4e-06 tr|A0SHH9|A0SHH9_9ORYZ Kelch-motif containing protein (Fragment)... 55 4e-06 tr|A0SHH8|A0SHH8_9ORYZ Kelch-motif containing protein (Fragment)... 55 4e-06 tr|A0SHH7|A0SHH7_9ORYZ Kelch-motif containing protein (Fragment)... 55 4e-06 tr|A9RUV9|A9RUV9_PHYPA Predicted protein OS=Physcomitrella paten... 55 5e-06 tr|B6TP81|B6TP81_MAIZE Ring canal kelch OS=Zea mays PE=2 SV=1 54 7e-06 tr|Q8S7U1|Q8S7U1_ORYSJ Putative Kelch motif containing protein O... 54 1e-05
>tr|A9SY79|A9SY79_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_137266 PE=4 SV=1 Length = 359
Score = 60.1 bits (144), Expect = 1e-07 Identities = 29/72 (40%), Positives = 43/72 (59%) Frame = +2
Query: 458 MAISGSREGKSVCSIFPGLPDDLARLCLAFVPLCHHGRLRVICKAWRAAYSSRFLLNIRS 637 +++SG R S+ PGLP+DLA CLA VP HH LR +CK WR +S + ++R Sbjct: 6 LSMSGVRGRGRATSLIPGLPNDLALQCLARVPRRHHLSLRCVCKEWRNMIASEYYYSLRK 65
Query: 638 QWRKTEEFLCIF 673 + + TE ++ F Sbjct: 66 RLKLTEGWIYAF 77
>tr|A9S9R5|A9S9R5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_163752 PE=4 SV=1 Length = 408
Score = 58.5 bits (140), Expect = 4e-07 Identities = 27/68 (39%), Positives = 40/68 (58%) Frame = +2
Query: 470 GSREGKSVCSIFPGLPDDLARLCLAFVPLCHHGRLRVICKAWRAAYSSRFLLNIRSQWRK 649 G ++ + + P LPD+LARLCLA VP H L +C++WR SR L +IR + Sbjct: 40 GVKQDEPHQGLIPALPDELARLCLARVPRAQHALLSAVCRSWRLLLQSRVLYDIRQELSL 99
Query: 650 TEEFLCIF 673 EE+L ++ Sbjct: 100 AEEWLFLW 107
>tr|A9S4B0|A9S4B0_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_23835 PE=4 SV=1 Length = 358
Score = 57.8 bits (138), Expect = 6e-07 Identities = 26/58 (44%), Positives = 33/58 (56%) Frame = +2
Query: 500 IFPGLPDDLARLCLAFVPLCHHGRLRVICKAWRAAYSSRFLLNIRSQWRKTEEFLCIF 673 I PGLP+DLA LCLA +PL H L+ +CKAW +W K EE +C+F Sbjct: 3 IIPGLPNDLACLCLACLPLWQHSTLKAVCKAWNGV----------KRWNKCEEIMCLF 50
>tr|A9SVB6|A9SVB6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_188796 PE=4 SV=1 Length = 373
Score = 56.2 bits (134), Expect = 2e-06 Identities = 27/76 (35%), Positives = 40/76 (52%) Frame = +2
Query: 446 GQHLMAISGSREGKSVCSIFPGLPDDLARLCLAFVPLCHHGRLRVICKAWRAAYSSRFLL 625 G +++ V + PGLP+DLA CLA VP HH LR +CK WR +S + Sbjct: 14 GDSSQSVTNKHAQGEVIVLIPGLPNDLALQCLARVPRRHHLNLRCVCKEWRNMIASEYYY 73
Query: 626 NIRSQWRKTEEFLCIF 673 ++R + TE ++ F Sbjct: 74 SLRKRLEVTEGWIYAF 89
>tr|A9RGV2|A9RGV2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_202273 PE=4 SV=1 Length = 426
Score = 55.8 bits (133), Expect = 2e-06 Identities = 25/64 (39%), Positives = 37/64 (57%) Frame = +2
Query: 479 EGKSVCSIFPGLPDDLARLCLAFVPLCHHGRLRVICKAWRAAYSSRFLLNIRSQWRKTEE 658 E ++ + PGLPDDLA CL VP HH +LRV+CK W + F ++R + EE Sbjct: 60 ERRNPPELLPGLPDDLAIACLIRVPRLHHRKLRVVCKRWDRLLAGNFFYSLRRRLGMAEE 119
Query: 659 FLCI 670 ++ + Sbjct: 120 WVYV 123
>tr|Q7XES2|Q7XES2_ORYSJ Os10g0409900 protein OS=Oryza sativa subsp. japonica GN=Os10g0409900 PE=2 SV=1 Length = 442
Score = 55.1 bits (131), Expect = 4e-06 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%) Frame = +2
Query: 470 GSREGKS--VCSIFPGLPDDLARLCLAFVPLCHHGRLRVICKAWRAAYSSRFLLNIRSQW 643 GSR+ +S + PGLPDDLA CL VP H LR++CK W S + ++R + Sbjct: 70 GSRKERSRTQAPLLPGLPDDLAIACLIRVPRVEHPNLRIVCKRWNRLLSGNYYYSLRKRN 129
Query: 644 RKTEEFLCIF 673 EE++ +F Sbjct: 130 GMAEEWVYVF 139
>tr|B8BGS5|B8BGS5_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_33535 PE=4 SV=1 Length = 441
Score = 55.1 bits (131), Expect = 4e-06 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%) Frame = +2
Query: 470 GSREGKS--VCSIFPGLPDDLARLCLAFVPLCHHGRLRVICKAWRAAYSSRFLLNIRSQW 643 GSR+ +S + PGLPDDLA CL VP H LR++CK W S + ++R + Sbjct: 69 GSRKERSRTQAPLLPGLPDDLAIACLIRVPRVEHPNLRIVCKRWNRLLSGNYYYSLRKRN 128
Query: 644 RKTEEFLCIF 673 EE++ +F Sbjct: 129 GMAEEWVYVF 138
>tr|A3C4N2|A3C4N2_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_030254 PE=4 SV=1 Length = 442
Score = 55.1 bits (131), Expect = 4e-06 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%) Frame = +2
Query: 470 GSREGKS--VCSIFPGLPDDLARLCLAFVPLCHHGRLRVICKAWRAAYSSRFLLNIRSQW 643 GSR+ +S + PGLPDDLA CL VP H LR++CK W S + ++R + Sbjct: 70 GSRKERSRTQAPLLPGLPDDLAIACLIRVPRVEHPNLRIVCKRWNRLLSGNYYYSLRKRN 129
Query: 644 RKTEEFLCIF 673 EE++ +F Sbjct: 130 GMAEEWVYVF 139
>tr|A0SHK4|A0SHK4_ORYRU Kelch-motif containing protein (Fragment) OS=Oryza rufipogon PE=4 SV=1 Length = 375
Score = 55.1 bits (131), Expect = 4e-06 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%) Frame = +2
Query: 470 GSREGKS--VCSIFPGLPDDLARLCLAFVPLCHHGRLRVICKAWRAAYSSRFLLNIRSQW 643 GSR+ +S + PGLPDDLA CL VP H LR++CK W S + ++R + Sbjct: 19 GSRKERSRTQAPLLPGLPDDLAIACLIRVPRVEHPNLRIVCKRWNRLLSGNYYYSLRKRN 78
Query: 644 RKTEEFLCIF 673 EE++ +F Sbjct: 79 GMAEEWVYVF 88
>tr|A0SHK1|A0SHK1_ORYRU Kelch-motif containing protein (Fragment) OS=Oryza rufipogon PE=4 SV=1 Length = 375
Score = 55.1 bits (131), Expect = 4e-06 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%) Frame = +2
Query: 470 GSREGKS--VCSIFPGLPDDLARLCLAFVPLCHHGRLRVICKAWRAAYSSRFLLNIRSQW 643 GSR+ +S + PGLPDDLA CL VP H LR++CK W S + ++R + Sbjct: 19 GSRKERSRTQAPLLPGLPDDLAIACLIRVPRVEHPNLRIVCKRWNRLLSGNYYYSLRKRN 78
Query: 644 RKTEEFLCIF 673 EE++ +F Sbjct: 79 GMAEEWVYVF 88
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