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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960197
Clone id TST39A01NGRL0006_M06
Library
Length 441
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_M06. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTGCGCAGAAGCTCGTCCATGGCGTATCCGGGTCCTTACTCGGGCAAGAGTACTTTTGCA
CAGGTGTGCAGGGTATCAGCACTCTTGCTAGGTTTTACGTATGGCACCTTCAAATTGAAA
TATTTGAAGGTCGCAGCAAAGGCTGAGCAGAAGGCAGCTGCCAAGGCACATCATTTAAAA
TGGGGACAGCATAGGACTGGCCGTCGTTTTACAACTTCGAAAAGGCTCGGAAAATTGTCT
TCTCATAAAAAGGGCCTTAACAATTTTCTGATGCATGTAACTGAGGACTACACATGTGCA
GGCGGATTTTGCTTGAATCCTGCAAATATTTATGCTGCCTGTCAGCATGTCATTCTTGAA
AGAGTTATTCCATGTGAGTCGGCGGCCATTCAAATAAATGCCTTTTCTGTGCGAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q92621
Definition sp|Q92621|NU205_HUMAN Nuclear pore complex protein Nup205 OS=Homo sapiens
Align length 63
Score (bit) 33.5
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960197|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_M06, 5'
         (413 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q92621|NU205_HUMAN Nuclear pore complex protein Nup205 OS=Hom...    33   0.34 
sp|Q9SD84|E13L3_ARATH Glucan endo-1,3-beta-glucosidase-like prot...    30   4.9  
sp|Q89621|YO2_ADEG1 Uncharacterized protein ORF2 OS=Fowl adenovi...    29   6.5  
sp|Q9FNQ2|E13L2_ARATH Glucan endo-1,3-beta-glucosidase-like prot...    29   6.5  
sp|P93960|RPOA_PSARU DNA-directed RNA polymerase subunit alpha O...    29   8.4  
sp|Q5EA18|CENPL_BOVIN Centromere protein L OS=Bos taurus GN=CENP...    29   8.4  

>sp|Q92621|NU205_HUMAN Nuclear pore complex protein Nup205 OS=Homo
            sapiens GN=NUP205 PE=1 SV=2
          Length = 2012

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = -2

Query: 235  IFRAFSKL*NDGQSYAVPILNDVPWQLPSAQPLLRPSNISI*RCHT*NLARVLIPCTPVQ 56
            +F     L    + Y + +LN + W + +A   LR ++++  R HT  L  +L+   PV+
Sbjct: 1091 LFSQLQYLPFSNKEYEISMLNQMSWLMKTASIELRVTSLNRQRSHTQRLLHLLLDDMPVK 1150

Query: 55   KYS 47
             YS
Sbjct: 1151 PYS 1153


>sp|Q9SD84|E13L3_ARATH Glucan endo-1,3-beta-glucosidase-like protein
           3 OS=Arabidopsis thaliana GN=At5g08000 PE=1 SV=1
          Length = 194

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 10/46 (21%)
 Frame = +1

Query: 247 KKGLNNFLMHVTEDYTCAGG----------FCLNPANIYAACQHVI 354
           K GL++ ++  T DY C  G           C NP N+ A C + +
Sbjct: 25  KTGLSDSVLQKTLDYACGNGADCNPTHPKGSCFNPDNVRAHCNYAV 70


>sp|Q89621|YO2_ADEG1 Uncharacterized protein ORF2 OS=Fowl adenovirus
           A serotype 1 (strain CELO / Phelps) GN=2 PE=4 SV=1
          Length = 276

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
 Frame = +1

Query: 214 TSKRLGKLSS-HKKGLNN--FLMHVTEDYTCAGG 306
           T  R G+LS+ H  GL +  +L+ +TED+ CAGG
Sbjct: 216 TRLRSGELSAEHAVGLRDCMYLIRLTEDFDCAGG 249


>sp|Q9FNQ2|E13L2_ARATH Glucan endo-1,3-beta-glucosidase-like protein
           2 OS=Arabidopsis thaliana GN=At5g61130 PE=1 SV=1
          Length = 201

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 10/46 (21%)
 Frame = +1

Query: 247 KKGLNNFLMHVTEDYTCAGG----------FCLNPANIYAACQHVI 354
           K GL++ ++  T DY C  G           C NP N+ + C + +
Sbjct: 25  KTGLSDTVLQATLDYACGNGADCNPTKPKQSCFNPDNVRSHCNYAV 70


>sp|P93960|RPOA_PSARU DNA-directed RNA polymerase subunit alpha
           OS=Psathyrostachys rupestris GN=rpoA PE=3 SV=1
          Length = 339

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +1

Query: 208 FTTSKRLGKLSSHKKGLN-NFLMHVTEDYTCAGGFCLNPANIYAACQHVILERVIPCESA 384
           FT  KRL  L  +KKG+  N++     + T     CL  ANI     H +L+ +   E  
Sbjct: 251 FTFQKRLTNLKKNKKGIPLNYIFIDQLELTSRTYNCLKRANI-----HTLLDLLSKTEED 305

Query: 385 AIQINAF 405
            ++I++F
Sbjct: 306 LMRIDSF 312


>sp|Q5EA18|CENPL_BOVIN Centromere protein L OS=Bos taurus GN=CENPL
           PE=2 SV=1
          Length = 346

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 259 NNFLMHVTEDYTCAGGFCLNPANIYAACQHVILERVIPCESAAIQINAFSV 411
           ++ L  V+ED+TC   F +N A    A      ++   C    + INAF++
Sbjct: 170 DSLLETVSEDFTCLPLFLVNGAETNTAIIGTWFQKTFDCYFRPLAINAFNL 220
tr_hit_id A9NLR8
Definition tr|A9NLR8|A9NLR8_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 52
Score (bit) 52.4
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960197|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_M06, 5'
         (413 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NLR8|A9NLR8_PICSI Putative uncharacterized protein OS=Picea...    52   1e-05
tr|A9P8Z6|A9P8Z6_POPTR Putative uncharacterized protein OS=Popul...    49   2e-04
tr|A7P7Z7|A7P7Z7_VITVI Chromosome chr3 scaffold_8, whole genome ...    48   3e-04
tr|A9PDU9|A9PDU9_POPTR Putative uncharacterized protein OS=Popul...    43   0.007
tr|A9PDY5|A9PDY5_POPTR Putative uncharacterized protein OS=Popul...    41   0.026
tr|Q7XT14|Q7XT14_ORYSJ Os04g0117100 protein OS=Oryza sativa subs...    40   0.045
tr|Q01MV8|Q01MV8_ORYSA H0207B04.8 protein OS=Oryza sativa GN=H02...    40   0.045
tr|A2XPS1|A2XPS1_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.045
tr|B6T233|B6T233_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.076
tr|B6SP56|B6SP56_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.076
tr|Q9MAC4|Q9MAC4_ARATH T4P13.18 protein (At3g01130) OS=Arabidops...    39   0.099
tr|Q8LDZ3|Q8LDZ3_ARATH Putative uncharacterized protein OS=Arabi...    39   0.17 
tr|Q8GXE7|Q8GXE7_ARATH GPI-anchored protein (At5g15320) OS=Arabi...    39   0.17 
tr|B6T134|B6T134_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.17 
tr|Q9LXF0|Q9LXF0_ARATH Putative uncharacterized protein F8M21_21...    38   0.29 
tr|B6SPF6|B6SPF6_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.29 
tr|A8MQH0|A8MQH0_ARATH Uncharacterized protein At5g15320.2 OS=Ar...    37   0.64 
tr|B6T0M6|B6T0M6_MAIZE Putative uncharacterized protein OS=Zea m...    36   1.1  
tr|B4DE72|B4DE72_HUMAN cDNA FLJ50078, highly similar to Nuclear ...    33   5.4  
tr|A6H8X3|A6H8X3_HUMAN Nucleoporin 205kDa (Nucleoporin 205kDa, i...    33   5.4  
tr|B7QAM7|B7QAM7_IXOSC Putative uncharacterized protein OS=Ixode...    33   9.3  

>tr|A9NLR8|A9NLR8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 52

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 27/52 (51%), Positives = 28/52 (53%)
 Frame = +1

Query: 19  MAYPGPYSGKSTFAQVCRVSALLLGFTYGTFKLKYLXXXXXXXXXXXXXXHH 174
           MA PGPYSG STFA V RVSA  LG  YG+ KL YL              HH
Sbjct: 1   MAGPGPYSGTSTFALVARVSAFTLGVVYGSMKLSYLKAKAKSHKITEAKGHH 52


>tr|A9P8Z6|A9P8Z6_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 55

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 23/33 (69%), Positives = 24/33 (72%)
 Frame = +1

Query: 28  PGPYSGKSTFAQVCRVSALLLGFTYGTFKLKYL 126
           PGPYSG ST A V RVSA  LG  YG+ KLKYL
Sbjct: 5   PGPYSGTSTLALVARVSAFSLGLVYGSVKLKYL 37


>tr|A7P7Z7|A7P7Z7_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00035980001
           PE=4 SV=1
          Length = 53

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 24/49 (48%), Positives = 25/49 (51%)
 Frame = +1

Query: 28  PGPYSGKSTFAQVCRVSALLLGFTYGTFKLKYLXXXXXXXXXXXXXXHH 174
           PGPYSG ST A V RVSA   G  YG+ KLKYL              HH
Sbjct: 5   PGPYSGTSTLALVARVSAFSAGLVYGSIKLKYLKSKAKSQKKAEAKSHH 53


>tr|A9PDU9|A9PDU9_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 53

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 22/49 (44%), Positives = 23/49 (46%)
 Frame = +1

Query: 28  PGPYSGKSTFAQVCRVSALLLGFTYGTFKLKYLXXXXXXXXXXXXXXHH 174
           PGPYSG ST A V R SA   G  YG+ KLK L              HH
Sbjct: 5   PGPYSGASTLALVARASAFSFGLVYGSVKLKILKMKVNSRNKAEAKAHH 53


>tr|A9PDY5|A9PDY5_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 53

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 21/49 (42%), Positives = 22/49 (44%)
 Frame = +1

Query: 28  PGPYSGKSTFAQVCRVSALLLGFTYGTFKLKYLXXXXXXXXXXXXXXHH 174
           PGPYSG S  A V R SA   G  YG+ KLK L              HH
Sbjct: 5   PGPYSGASALALVARASAFSFGLVYGSVKLKILKMKANSHKKAEAKAHH 53


>tr|Q7XT14|Q7XT14_ORYSJ Os04g0117100 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0050O03.8 PE=4 SV=2
          Length = 52

 Score = 40.4 bits (93), Expect = 0.045
 Identities = 20/33 (60%), Positives = 21/33 (63%)
 Frame = +1

Query: 28  PGPYSGKSTFAQVCRVSALLLGFTYGTFKLKYL 126
           PGPYSG ST A V R SAL +G  YG  KL  L
Sbjct: 5   PGPYSGVSTLALVARASALGVGVVYGAVKLSIL 37


>tr|Q01MV8|Q01MV8_ORYSA H0207B04.8 protein OS=Oryza sativa
           GN=H0207B04.8 PE=4 SV=1
          Length = 52

 Score = 40.4 bits (93), Expect = 0.045
 Identities = 20/33 (60%), Positives = 21/33 (63%)
 Frame = +1

Query: 28  PGPYSGKSTFAQVCRVSALLLGFTYGTFKLKYL 126
           PGPYSG ST A V R SAL +G  YG  KL  L
Sbjct: 5   PGPYSGVSTLALVARASALGVGVVYGAVKLSIL 37


>tr|A2XPS1|A2XPS1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_14632 PE=4 SV=1
          Length = 52

 Score = 40.4 bits (93), Expect = 0.045
 Identities = 20/33 (60%), Positives = 21/33 (63%)
 Frame = +1

Query: 28  PGPYSGKSTFAQVCRVSALLLGFTYGTFKLKYL 126
           PGPYSG ST A V R SAL +G  YG  KL  L
Sbjct: 5   PGPYSGVSTLALVARASALGVGVVYGAVKLSIL 37


>tr|B6T233|B6T233_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 51

 Score = 39.7 bits (91), Expect = 0.076
 Identities = 19/33 (57%), Positives = 21/33 (63%)
 Frame = +1

Query: 28  PGPYSGKSTFAQVCRVSALLLGFTYGTFKLKYL 126
           PGPYSG ST A V R SA  +G  YG+ KL  L
Sbjct: 5   PGPYSGVSTLALVARASAFGVGVVYGSIKLSIL 37


>tr|B6SP56|B6SP56_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 51

 Score = 39.7 bits (91), Expect = 0.076
 Identities = 19/33 (57%), Positives = 21/33 (63%)
 Frame = +1

Query: 28  PGPYSGKSTFAQVCRVSALLLGFTYGTFKLKYL 126
           PGPYSG ST A V R SA  +G  YG+ KL  L
Sbjct: 5   PGPYSGVSTLALVARASAFGVGVVYGSIKLSIL 37