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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960206
Clone id TST39A01NGRL0006_M15
Library
Length 467
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_M15. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
ATCAAGTGTTAGTCATGGCTTCTAAGAAGATAACGTGCATGCTGGTGATAGTGATGGTGA
TGCTGGTGGCATACATGAGCAGCGTTGCTAATGCTGAGGTGGAGGAAGTGGGGCGTAAAT
TAGTGGCTGGGGCAGGGGCAGAAGCAGGTGAGGAGGCCGAGTTGAGGGCCGCGAAAGGTT
ATTACCCTTACAAGAAAGGGTACAAGAAGGGCGGCTACCACCACAAGAAGGGCGGCGGCT
ACGGCAAGGGTCCGGGCCACCCTCACTAACTCAAGGCAGCTGCTTCGTCCGAGCGCGTCT
TCTGTCCGATTCTTGGGTTTATCCACCCCAGACGCGCGTTCCTTGTGAAATAAATAATAC
GGTGTCAGCACTGAAGTGTTAAAATTGTCTTTGTTGTTGCAACCTGTGTACCTTATGGGA
ATTCATTTGCTGTTTTAACTTTTGTTCCAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q54F40
Definition sp|Q54F40|Y1133_DICDI Probable serine/threonine-protein kinase DDB_G0291133 OS=Dictyostelium discoideum
Align length 21
Score (bit) 29.6
E-value 6.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960206|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_M15, 5'
         (448 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54F40|Y1133_DICDI Probable serine/threonine-protein kinase D...    30   6.0  
sp|Q6ZS49|YQ050_HUMAN Putative uncharacterized protein FLJ45831 ...    29   7.8  

>sp|Q54F40|Y1133_DICDI Probable serine/threonine-protein kinase
           DDB_G0291133 OS=Dictyostelium discoideum GN=DDB_G0291133
           PE=3 SV=1
          Length = 778

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 398 NNKDNFNTSVLTPYYLFHKER 336
           NN +N+N  ++TPY+ + KER
Sbjct: 510 NNINNYNLKLITPYFQYQKER 530


>sp|Q6ZS49|YQ050_HUMAN Putative uncharacterized protein FLJ45831
           OS=Homo sapiens PE=5 SV=1
          Length = 121

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = -3

Query: 380 NTSVLTPYYLFHKERASGVDKPK 312
           N S L PYYLFH+ R  GVD  K
Sbjct: 69  NASKLMPYYLFHRSR--GVDNSK 89
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960206|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_M15, 5'
         (448 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******