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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960210
Clone id TST39A01NGRL0006_M19
Library
Length 465
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_M19. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GAGGGGGCAGAGCCTAATGCCTCAGCTTTTGAAACTGCCTGGCCTGATCCCACTTCCAAG
CAGGTACCCCATTTTGTTGTAAGTATATATATACGGTCCGTGTTATGATTACCGCCAGGA
GCCCATCAGGCTAATTGCCATAGACAATGTGGTGGCTACTTTCCTTCATTTTTTTTGCGG
TCTCACTGATAATAAAGTTGTATGGAGCATAAATGAAGCATCAGTGAAAATAGCAATGGG
GTCCTTGAGGCCCTGACTTGCAGATGTGGGGAGCCTTGTAACTGGGCTTGACCCCCATCT
TTAACTGTGAAGGTAATATTCCATACATGCTCTATTTGCTAGAAATGTATTTTTCAAGAA
AACAGCCTTCTTGGTTGTGGTTCCAGCATCATAGAGCATGCGGGCCTTATTACTAAGGAT
GACTAGGCTTCTTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P34298
Definition sp|P34298|DUOXA_CAEEL DUOXA-like protein C06E1.3 OS=Caenorhabditis elegans
Align length 34
Score (bit) 31.2
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960210|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_M19, 5'
         (436 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P34298|DUOXA_CAEEL DUOXA-like protein C06E1.3 OS=Caenorhabdit...    31   1.9  
sp|Q58895|T2M5_METJA Type-2 restriction enzyme MjaV OS=Methanoca...    30   3.4  
sp|A6VW08|NQRA_MARMS Na(+)-translocating NADH-quinone reductase ...    29   7.5  
sp|Q9XPN6|MATK_HELBU Maturase K OS=Helonias bullata GN=matK PE=3...    29   7.5  
sp|Q9YB79|GATB_AERPE Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf...    29   9.8  
sp|P22748|CAH4_HUMAN Carbonic anhydrase 4 OS=Homo sapiens GN=CA4...    29   9.8  

>sp|P34298|DUOXA_CAEEL DUOXA-like protein C06E1.3 OS=Caenorhabditis
           elegans GN=C06E1.3 PE=2 SV=2
          Length = 397

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 309 EGNIPYMLYLLEMYFSRKQPSWLWFQHHRACGPY 410
           E  +PY +  +  YFS  Q S+ W +H+R  G Y
Sbjct: 155 ENGLPYPMLSVLEYFSLNQDSFDWGRHYRVAGHY 188


>sp|Q58895|T2M5_METJA Type-2 restriction enzyme MjaV
           OS=Methanocaldococcus jannaschii GN=mjaVR PE=1 SV=2
          Length = 230

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -1

Query: 361 FLEKYISSK*SMYGILPSQLKMGVKPSYKAPHICKS 254
           F EK I+S    +   PS+ + GVK  Y APH+C S
Sbjct: 144 FNEKNINSSHRTFYASPSKDEEGVKIRYDAPHLCLS 179


>sp|A6VW08|NQRA_MARMS Na(+)-translocating NADH-quinone reductase
           subunit A OS=Marinomonas sp. (strain MWYL1) GN=nqrA PE=3
           SV=1
          Length = 445

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 149 VVATFLHFFCGLTDNKVVWSINEASVKIAMGSL 247
           +  T +HF   + D K VWSIN   V +A+G L
Sbjct: 218 LAGTHIHFLDPVNDKKTVWSINYQDV-VAIGKL 249


>sp|Q9XPN6|MATK_HELBU Maturase K OS=Helonias bullata GN=matK PE=3
           SV=1
          Length = 515

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
 Frame = +2

Query: 65  YPILL*VYIYGPCYDYR------QEPIRLIAIDNVVATFL--HFFCGL-TDNKVVWSINE 217
           YP+L   YIY   YD+        EP+ +++ DN  ++ L  H    +   N +++SIN+
Sbjct: 20  YPLLFQEYIYTLAYDHGLNGSIFYEPMEILSYDNKSSSVLVKHLITRMYQQNYLIYSIND 79

Query: 218 AS 223
           +S
Sbjct: 80  SS 81


>sp|Q9YB79|GATB_AERPE Aspartyl/glutamyl-tRNA(Asn/Gln)
           amidotransferase subunit B OS=Aeropyrum pernix GN=gatB
           PE=3 SV=1
          Length = 486

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 11  SLMPQLLKLPGLIPLPSRYPILL 79
           ++ P  L LPG +P+PSR PI+L
Sbjct: 41  NVCPVCLGLPGALPVPSRRPIVL 63


>sp|P22748|CAH4_HUMAN Carbonic anhydrase 4 OS=Homo sapiens GN=CA4
           PE=1 SV=2
          Length = 312

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
 Frame = +2

Query: 59  SRYPILL*VYIYGPCYDYRQEPIRLIA----IDNVVATFLHFFCGLTDNKVVWSINEASV 226
           S YP L+ V   G C   RQ PI ++     +D  +  F  FF G  D K  W++     
Sbjct: 32  SNYPCLVPVKWGGNCQKDRQSPINIVTTKAKVDKKLGRF--FFSGY-DKKQTWTVQNNGH 88

Query: 227 KIAM 238
            + M
Sbjct: 89  SVMM 92
tr_hit_id A4C4N8
Definition tr|A4C4N8|A4C4N8_9GAMM Putative Outer membrane TonB-dependent receptor OS=Pseudoalteromonas tunicata D2
Align length 73
Score (bit) 33.1
E-value 7.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960210|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_M19, 5'
         (436 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4C4N8|A4C4N8_9GAMM Putative Outer membrane TonB-dependent re...    33   7.1  
tr|B0WMN7|B0WMN7_CULQU Putative uncharacterized protein OS=Culex...    33   7.1  
tr|Q1IRL0|Q1IRL0_ACIBL UTP-GlnB (Protein PII) uridylyltransferas...    33   9.2  

>tr|A4C4N8|A4C4N8_9GAMM Putative Outer membrane TonB-dependent
           receptor OS=Pseudoalteromonas tunicata D2 GN=PTD2_03086
           PE=3 SV=1
          Length = 800

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
 Frame = -2

Query: 405 ARMLYDAGTTTKKAVFLKNTFLANRACMEYYLHS*RW------GSSPVTRLPTSASQGLK 244
           A MLY A TTT   V  K+T+L NR      L +  W      G++ V +LP +++ G  
Sbjct: 566 AEMLYTADTTTNYEVGFKSTWLKNRVHFNAALFNVDWDDAQIAGATVVGQLPYTSNAGTA 625

Query: 243 DPIAIFTDASFML 205
           +   I   +  ML
Sbjct: 626 NAKGIEISSRAML 638


>tr|B0WMN7|B0WMN7_CULQU Putative uncharacterized protein OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ008243 PE=4 SV=1
          Length = 1801

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 235 NGVLEALTCRCGEPCNWA*PPSLTVKVIF 321
           N V   +TC CG PC W  PP L  K +F
Sbjct: 32  NRVRNCVTC-CGRPCTWGLPPRLVGKFVF 59


>tr|Q1IRL0|Q1IRL0_ACIBL UTP-GlnB (Protein PII) uridylyltransferase,
           GlnD OS=Acidobacteria bacterium (strain Ellin345)
           GN=Acid345_1488 PE=4 SV=1
          Length = 873

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 113 RQEPIRLIAIDNVVATFLHFFCGLTDNKVVWSINEASVKIAMG 241
           R +  R +   + V  FLH+  G  DNK+ W   E + K+ MG
Sbjct: 250 RGQTERAVEFLDSVRCFLHYRSGRDDNKLSWDAQEEAAKLGMG 292