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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960222
Clone id TST39A01NGRL0006_N07
Library
Length 292
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_N07. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GGAGCTTGTGCTCGTTTCCGATAATGCAGCGCTCCTTCTCTCTGTCGCTGGATATGAAGG
ATTAGTATGGGTGATCGACCTCTCTAGGTCATTCGCCATCATTGAGAATGTCACAGACTA
CTGTTTTGATCCGGAGCCTGGTCATGACTCACCTCGTACAGCACGCATATGAATAGCTCC
CTCTTATTCCGGGTTTGCGTGTACCTTGTCTAATAGTGGCGCCCGGCTGGGTTCAGACCT
TCTCTATATCACACCGAGTGCTTCTTTCCAGCTCGCGGGTCTCTGACTTGAG
■■Homology search results ■■ -
sp_hit_id Q0ANS4
Definition sp|Q0ANS4|RPOA_MARMM DNA-directed RNA polymerase subunit alpha OS=Maricaulis maris (strain MCS10)
Align length 32
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960222|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_N07, 5'
         (292 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0ANS4|RPOA_MARMM DNA-directed RNA polymerase subunit alpha O...    31   2.2  
sp|B1ZZL9|DNLI_OPITP Probable DNA ligase OS=Opitutus terrae (str...    31   2.2  
sp|Q5XX13|FBW10_HUMAN F-box/WD repeat-containing protein 10 OS=H...    30   2.8  
sp|Q9P212|PLCE1_HUMAN 1-phosphatidylinositol-4,5-bisphosphate ph...    29   6.3  

>sp|Q0ANS4|RPOA_MARMM DNA-directed RNA polymerase subunit alpha
           OS=Maricaulis maris (strain MCS10) GN=rpoA PE=3 SV=1
          Length = 339

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 134 EPGHDSPRTARI*IAPSYSGFACTLSNSGARL 229
           EPGHD  R A+I   P   GF  TL N+  R+
Sbjct: 18  EPGHDPARQAKIVAEPLERGFGMTLGNALRRV 49


>sp|B1ZZL9|DNLI_OPITP Probable DNA ligase OS=Opitutus terrae (strain
           DSM 11246 / PB90-1) GN=lig PE=3 SV=1
          Length = 1017

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
 Frame = +2

Query: 128 DPEPGHDSPRTA-------RI*IAPSYSGFACTLSNSGARL 229
           DP PG  SP TA       RI +   Y G  C L  SG R+
Sbjct: 644 DPGPGSSSPATADAAPALARIWLEEKYDGIRCQLHKSGGRV 684


>sp|Q5XX13|FBW10_HUMAN F-box/WD repeat-containing protein 10 OS=Homo
           sapiens GN=FBXW10 PE=2 SV=1
          Length = 1052

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 5   LVLVSDNAALLLSVAGYEGLVWVIDLSRSFAIIENVTDYCFDPEPGHDS 151
           L+L   N  LLL+ A    ++++ + +    + +++TD CF PE  H S
Sbjct: 139 LLLQMCNPKLLLTAANVIRVLFLREENNISGLNQDITDVCFSPEKDHSS 187


>sp|Q9P212|PLCE1_HUMAN 1-phosphatidylinositol-4,5-bisphosphate
            phosphodiesterase epsilon-1 OS=Homo sapiens GN=PLCE1 PE=1
            SV=3
          Length = 2302

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 279  PASWKEALGVI*RRSEPSRAPLLDKVHANPE*EGAIHMRAVR 154
            PAS K  LGV+   +EP + PLL     +   EG + + AV+
Sbjct: 901  PASSKAKLGVLNNTAEPGKFPLLGNAGLSSLTEGVLDLFAVK 942
tr_hit_id B8FH84
Definition tr|B8FH84|B8FH84_9DELT Putative uncharacterized protein OS=Desulfatibacillum alkenivorans AK-01
Align length 26
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960222|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_N07, 5'
         (292 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8FH84|B8FH84_9DELT Putative uncharacterized protein OS=Desul...    35   1.4  
tr|Q0C902|Q0C902_ASPTN Putative uncharacterized protein OS=Asper...    33   7.1  

>tr|B8FH84|B8FH84_9DELT Putative uncharacterized protein
           OS=Desulfatibacillum alkenivorans AK-01 GN=Dalk_0465
           PE=4 SV=1
          Length = 314

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = -2

Query: 276 ASWKEALGVI*RRSEPSRAPLLDKVH 199
           A+WK+AL  I +R  PSR PLL+K H
Sbjct: 28  AAWKDALHFIIKRDHPSRLPLLEKAH 53


>tr|Q0C902|Q0C902_ASPTN Putative uncharacterized protein
           OS=Aspergillus terreus (strain NIH 2624) GN=ATEG_09832
           PE=4 SV=1
          Length = 677

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -2

Query: 171 HMRAVRGES*PGSGSKQ*SVTFSMMAND--LERSITHTNPSYPATERRSAALSETST 7
           H+     ES P +GS    +TF     D  L+++  HT  SYP    R A++S T T
Sbjct: 189 HLLTSSPESKPANGSSGPHITFDDTDRDYELKKNRRHTYSSYPVNGNRRASISSTRT 245