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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960223
Clone id TST39A01NGRL0006_N08
Library
Length 624
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_N08. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
ATTATACTGGTCCCCAACCTTATGGCCCATGTGGGTGAATGTTGCAAGAAGCTCAGCGAC
CACAATGGTCTAATGCAAATACGCATTGCGACCAAAATGCAGGGATATTCAAGGCAGTTT
ACTCTGCCTACCTTCTTGCGGGTGGCTAGGCCAAAACCCTTATGTTTGTATATCAATCCA
GATGAGGAGTCTTATTCAGAGACTGTGAGTACCTTGGAAATTTGCACAGAGGCTGGATTC
CATAGAGCTTGGTGCCACTCACTCAAACAAGGAAAGCGGCAAAGTCAGAGATCTCAAGAA
TCAGGAATCTTAAAGCAGGCTGAGGTAGTCATAGAAGAGTTGCTGCTAATGGTCAAGTTG
GTGATATTAAGGGTACAACGGCGCTGTGGGCTTGCACTCTCTGCGGCACCTCCTTACTCA
TCTGAGTTTGTCTTTGCTTGCCTTACGAACATCATTTCTGACGGTGACAACTTCAGCGAC
GACGCGACAGACATGACAAAACTGACGACAACGTGACAAGTGAAGATCAATTATAGCAAT
GGTTTCTAGATTTTAATTTTGAATTTCAAATTTGAAAGGCTTATCAAGGTGCACCTCTCT
CTCACTCTCTCTCTCTCTCTCTCT
■■Homology search results ■■ -
sp_hit_id O81635
Definition sp|O81635|ATK4_ARATH Kinesin-4 OS=Arabidopsis thaliana
Align length 29
Score (bit) 36.6
E-value 0.0007
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960223|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_N08, 5'
         (624 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O81635|ATK4_ARATH Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 P...    37   7e-04
sp|Q9RNU9|CAPP_STRCO Phosphoenolpyruvate carboxylase OS=Streptom...    30   7.7  
sp|Q56A27|NCBP1_RAT Nuclear cap-binding protein subunit 1 OS=Rat...    30   7.7  
sp|Q3UYV9|NCBP1_MOUSE Nuclear cap-binding protein subunit 1 OS=M...    30   7.7  

>sp|O81635|ATK4_ARATH Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1
           SV=2
          Length = 987

 Score = 36.6 bits (83), Expect(3) = 7e-04
 Identities = 15/29 (51%), Positives = 23/29 (79%)
 Frame = +2

Query: 218 KFAQRLDSIELGATHSNKESGKVRDLKNQ 304
           KFA+R+ S+ELGA   NK++ +V++LK Q
Sbjct: 713 KFAERVGSVELGAARVNKDNSEVKELKEQ 741



 Score = 23.9 bits (50), Expect(3) = 7e-04
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 166 LYINPDEESYSETVSTLEICTEAG 237
           ++I+P+ ++  ET+STL+     G
Sbjct: 696 VHISPEPDTLGETISTLKFAERVG 719



 Score = 21.6 bits (44), Expect(3) = 7e-04
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 141 GG*AKTLMFVYQS 179
           GG AKTLMFV+ S
Sbjct: 687 GGSAKTLMFVHIS 699


>sp|Q9RNU9|CAPP_STRCO Phosphoenolpyruvate carboxylase
           OS=Streptomyces coelicolor GN=ppc PE=1 SV=1
          Length = 911

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 219 NLHRGWIP*SLVPLTQTRKAAKSEISRIRNLKAG*GSHRRVAANGQVGDI 368
           +LH GW    +VPL +T    K+  + + +L A     R VA  G V ++
Sbjct: 511 DLHAGWAKIGIVPLLETTDELKAADTILEDLLADPSYRRLVALRGDVQEV 560


>sp|Q56A27|NCBP1_RAT Nuclear cap-binding protein subunit 1 OS=Rattus
           norvegicus GN=Ncbp1 PE=1 SV=1
          Length = 790

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 20/76 (26%), Positives = 29/76 (38%)
 Frame = +1

Query: 13  PNLMAHVGECCKKLSDHNGLMQIRIATKMQGYSRQFTLPTFLRVARPKPLCLYINPDEES 192
           P  +  V E C +LS H  ++ I               PTF  +    P C+Y   DE S
Sbjct: 446 PKFVREVLEKCMRLSYHQHILDI-------------VPPTFSALCPANPTCIYKYGDESS 492

Query: 193 YSETVSTLEICTEAGF 240
            S    ++ +C    F
Sbjct: 493 NSLPGHSVALCLSVAF 508


>sp|Q3UYV9|NCBP1_MOUSE Nuclear cap-binding protein subunit 1 OS=Mus
           musculus GN=Ncbp1 PE=1 SV=2
          Length = 790

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 20/76 (26%), Positives = 29/76 (38%)
 Frame = +1

Query: 13  PNLMAHVGECCKKLSDHNGLMQIRIATKMQGYSRQFTLPTFLRVARPKPLCLYINPDEES 192
           P  +  V E C +LS H  ++ I               PTF  +    P C+Y   DE S
Sbjct: 446 PKFVREVLEKCMRLSYHQHILDI-------------VPPTFSALCPANPTCIYKYGDESS 492

Query: 193 YSETVSTLEICTEAGF 240
            S    ++ +C    F
Sbjct: 493 NSLPGHSVALCLSVAF 508
tr_hit_id A9SJ46
Definition tr|A9SJ46|A9SJ46_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 29
Score (bit) 41.6
E-value 7.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960223|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_N08, 5'
         (624 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SJ46|A9SJ46_PHYPA Predicted protein OS=Physcomitrella paten...    42   7e-05
tr|Q8W1Y3|Q8W1Y3_ARATH Kinesin-like protein heavy chain OS=Arabi...    45   0.001
tr|O22240|O22240_ARATH Putative kinesin-like protein OS=Arabidop...    45   0.001
tr|A9SPL2|A9SPL2_PHYPA Predicted protein (Fragment) OS=Physcomit...    37   0.001
tr|A7Q9E6|A7Q9E6_VITVI Chromosome chr19 scaffold_66, whole genom...    45   0.002
tr|A5APK4|A5APK4_VITVI Putative uncharacterized protein OS=Vitis...    38   0.004
tr|A7PWI0|A7PWI0_VITVI Chromosome chr8 scaffold_34, whole genome...    38   0.004
tr|A3AH36|A3AH36_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.005
tr|B8AM36|B8AM36_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.005
tr|Q10MN5|Q10MN5_ORYSJ Kinesin-4, putative, expressed OS=Oryza s...    40   0.005
tr|Q0DSK7|Q0DSK7_ORYSJ Os03g0301800 protein (Fragment) OS=Oryza ...    40   0.005
tr|B8AV47|B8AV47_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.005
tr|Q7XJW0|Q7XJW0_ORYSA OSJNBa0016O02.10 protein OS=Oryza sativa ...    42   0.005
tr|Q01IR9|Q01IR9_ORYSA OSIGBa0128P10.5 protein OS=Oryza sativa G...    42   0.006
tr|A3AUP3|A3AUP3_ORYSJ Putative uncharacterized protein OS=Oryza...    42   0.006
tr|A5BG13|A5BG13_VITVI Putative uncharacterized protein OS=Vitis...    36   0.017
tr|A7PRW1|A7PRW1_VITVI Chromosome chr14 scaffold_27, whole genom...    36   0.017
tr|A9SDI6|A9SDI6_PHYPA Predicted protein (Fragment) OS=Physcomit...    40   0.020
tr|Q9SS42|Q9SS42_ARATH Kinesin-like protein OS=Arabidopsis thali...    34   0.023
tr|A3CDK9|A3CDK9_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.034
tr|Q5MNW6|Q5MNW6_GOSHI Kinesin OS=Gossypium hirsutum GN=KCH1 PE=...    39   0.043
tr|Q0IMS9|Q0IMS9_ORYSJ Os12g0547500 protein OS=Oryza sativa subs...    39   0.043
tr|Q5NA73|Q5NA73_ORYSJ cDNA clone:002-104-F01, full insert seque...    41   0.050
tr|Q0JP53|Q0JP53_ORYSJ Os01g0243100 protein (Fragment) OS=Oryza ...    41   0.050
tr|A2ZR71|A2ZR71_ORYSJ Putative uncharacterized protein OS=Oryza...    41   0.050
tr|A5C0F0|A5C0F0_VITVI Putative uncharacterized protein OS=Vitis...    35   0.059
tr|A7Q0H7|A7Q0H7_VITVI Chromosome chr7 scaffold_42, whole genome...    35   0.060
tr|Q2QZT7|Q2QZT7_ORYSJ Kinesin motor protein, putative, expresse...    40   0.11 
tr|Q0IR68|Q0IR68_ORYSJ Os11g0672400 protein OS=Oryza sativa subs...    40   0.11 
tr|B8ACD4|B8ACD4_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.11 

>tr|A9SJ46|A9SJ46_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_130773 PE=3 SV=1
          Length = 828

 Score = 41.6 bits (96), Expect(3) = 7e-05
 Identities = 17/29 (58%), Positives = 25/29 (86%)
 Frame = +2

Query: 218 KFAQRLDSIELGATHSNKESGKVRDLKNQ 304
           KFA+R+ ++ELGA  SNKESG++++LK Q
Sbjct: 755 KFAERVSTVELGAARSNKESGEIQNLKEQ 783



 Score = 26.2 bits (56), Expect(3) = 7e-05
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +1

Query: 166 LYINPDEESYSETVSTLE 219
           ++I+PD +S+ ETVSTL+
Sbjct: 738 VHISPDVDSFGETVSTLK 755



 Score = 21.6 bits (44), Expect(3) = 7e-05
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 141 GG*AKTLMFVYQS 179
           GG AKTLMFV+ S
Sbjct: 729 GGQAKTLMFVHIS 741


>tr|Q8W1Y3|Q8W1Y3_ARATH Kinesin-like protein heavy chain
           OS=Arabidopsis thaliana GN=KP1 PE=2 SV=1
          Length = 1087

 Score = 45.4 bits (106), Expect(2) = 0.001
 Identities = 21/31 (67%), Positives = 27/31 (87%)
 Frame = +2

Query: 218 KFAQRLDSIELGATHSNKESGKVRDLKNQES 310
           KFAQR+ SIELGA  SNKE+G++RDLK++ S
Sbjct: 697 KFAQRVASIELGAARSNKETGEIRDLKDEIS 727



 Score = 21.2 bits (43), Expect(2) = 0.001
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +3

Query: 141 GG*AKTLMFVY 173
           GG AKTLMFV+
Sbjct: 671 GGQAKTLMFVH 681


>tr|O22240|O22240_ARATH Putative kinesin-like protein OS=Arabidopsis
           thaliana GN=T32N15.10 PE=3 SV=1
          Length = 767

 Score = 45.4 bits (106), Expect(2) = 0.001
 Identities = 21/31 (67%), Positives = 27/31 (87%)
 Frame = +2

Query: 218 KFAQRLDSIELGATHSNKESGKVRDLKNQES 310
           KFAQR+ SIELGA  SNKE+G++RDLK++ S
Sbjct: 584 KFAQRVASIELGAARSNKETGEIRDLKDEIS 614



 Score = 21.2 bits (43), Expect(2) = 0.001
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +3

Query: 141 GG*AKTLMFVY 173
           GG AKTLMFV+
Sbjct: 558 GGQAKTLMFVH 568


>tr|A9SPL2|A9SPL2_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_133132 PE=3 SV=1
          Length = 635

 Score = 37.4 bits (85), Expect(3) = 0.001
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = +2

Query: 218 KFAQRLDSIELGATHSNKESGKVRDLKNQ 304
           KFA+R+ S+ELGA  SNKE  ++ +LK+Q
Sbjct: 589 KFAERVASVELGAARSNKECAEIANLKDQ 617



 Score = 26.2 bits (56), Expect(3) = 0.001
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +1

Query: 166 LYINPDEESYSETVSTLE 219
           ++I+PD ES+ ET+STL+
Sbjct: 572 VHISPDVESFGETLSTLK 589



 Score = 21.6 bits (44), Expect(3) = 0.001
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 141 GG*AKTLMFVYQS 179
           GG AKTLMFV+ S
Sbjct: 563 GGQAKTLMFVHIS 575


>tr|A7Q9E6|A7Q9E6_VITVI Chromosome chr19 scaffold_66, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00033442001
           PE=3 SV=1
          Length = 1049

 Score = 44.7 bits (104), Expect(2) = 0.002
 Identities = 20/31 (64%), Positives = 26/31 (83%)
 Frame = +2

Query: 218 KFAQRLDSIELGATHSNKESGKVRDLKNQES 310
           KFA+R+ SIELGA  SNKE+G++RDLK + S
Sbjct: 696 KFAERVSSIELGAARSNKETGEIRDLKEEIS 726



 Score = 21.2 bits (43), Expect(2) = 0.002
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +3

Query: 141 GG*AKTLMFVY 173
           GG AKTLMFV+
Sbjct: 670 GGQAKTLMFVH 680


>tr|A5APK4|A5APK4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_007863 PE=3 SV=1
          Length = 972

 Score = 38.1 bits (87), Expect(3) = 0.004
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = +2

Query: 218 KFAQRLDSIELGATHSNKESGKVRDLKNQ 304
           KFAQR+ ++ELG    NKES KV +LK Q
Sbjct: 688 KFAQRVSTVELGTARLNKESSKVMELKEQ 716



 Score = 24.6 bits (52), Expect(3) = 0.004
 Identities = 7/17 (41%), Positives = 16/17 (94%)
 Frame = +1

Query: 169 YINPDEESYSETVSTLE 219
           +++P+++S+ ET+STL+
Sbjct: 672 HLSPEDDSFGETISTLK 688



 Score = 20.4 bits (41), Expect(3) = 0.004
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 141 GG*AKTLMFVYQS 179
           GG AKTLMF + S
Sbjct: 662 GGHAKTLMFAHLS 674


>tr|A7PWI0|A7PWI0_VITVI Chromosome chr8 scaffold_34, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00025619001
           PE=3 SV=1
          Length = 723

 Score = 38.1 bits (87), Expect(3) = 0.004
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = +2

Query: 218 KFAQRLDSIELGATHSNKESGKVRDLKNQ 304
           KFAQR+ ++ELG    NKES KV +LK Q
Sbjct: 684 KFAQRVSTVELGTARLNKESSKVMELKEQ 712



 Score = 24.6 bits (52), Expect(3) = 0.004
 Identities = 7/17 (41%), Positives = 16/17 (94%)
 Frame = +1

Query: 169 YINPDEESYSETVSTLE 219
           +++P+++S+ ET+STL+
Sbjct: 668 HLSPEDDSFGETISTLK 684



 Score = 20.4 bits (41), Expect(3) = 0.004
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 141 GG*AKTLMFVYQS 179
           GG AKTLMF + S
Sbjct: 658 GGHAKTLMFAHLS 670


>tr|A3AH36|A3AH36_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_010108 PE=3 SV=1
          Length = 1047

 Score = 40.4 bits (93), Expect(3) = 0.005
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +2

Query: 218 KFAQRLDSIELGATHSNKESGKVRDLKNQ 304
           KFA+R+ ++ELGA   NKESG+V++LK Q
Sbjct: 734 KFAERVSTVELGAARLNKESGEVKELKEQ 762



 Score = 21.6 bits (44), Expect(3) = 0.005
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 141 GG*AKTLMFVYQS 179
           GG AKTLMFV+ S
Sbjct: 708 GGQAKTLMFVHIS 720



 Score = 20.8 bits (42), Expect(3) = 0.005
 Identities = 6/18 (33%), Positives = 15/18 (83%)
 Frame = +1

Query: 166 LYINPDEESYSETVSTLE 219
           ++I+P+ ++  E++STL+
Sbjct: 717 VHISPESDALGESISTLK 734


>tr|B8AM36|B8AM36_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_11198 PE=4 SV=1
          Length = 1017

 Score = 40.4 bits (93), Expect(3) = 0.005
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +2

Query: 218 KFAQRLDSIELGATHSNKESGKVRDLKNQ 304
           KFA+R+ ++ELGA   NKESG+V++LK Q
Sbjct: 717 KFAERVSTVELGAARLNKESGEVKELKEQ 745



 Score = 21.6 bits (44), Expect(3) = 0.005
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 141 GG*AKTLMFVYQS 179
           GG AKTLMFV+ S
Sbjct: 691 GGQAKTLMFVHIS 703



 Score = 20.8 bits (42), Expect(3) = 0.005
 Identities = 6/18 (33%), Positives = 15/18 (83%)
 Frame = +1

Query: 166 LYINPDEESYSETVSTLE 219
           ++I+P+ ++  E++STL+
Sbjct: 700 VHISPESDALGESISTLK 717


>tr|Q10MN5|Q10MN5_ORYSJ Kinesin-4, putative, expressed OS=Oryza
           sativa subsp. japonica GN=LOC_Os03g18980 PE=3 SV=1
          Length = 1014

 Score = 40.4 bits (93), Expect(3) = 0.005
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +2

Query: 218 KFAQRLDSIELGATHSNKESGKVRDLKNQ 304
           KFA+R+ ++ELGA   NKESG+V++LK Q
Sbjct: 701 KFAERVSTVELGAARLNKESGEVKELKEQ 729



 Score = 21.6 bits (44), Expect(3) = 0.005
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 141 GG*AKTLMFVYQS 179
           GG AKTLMFV+ S
Sbjct: 675 GGQAKTLMFVHIS 687



 Score = 20.8 bits (42), Expect(3) = 0.005
 Identities = 6/18 (33%), Positives = 15/18 (83%)
 Frame = +1

Query: 166 LYINPDEESYSETVSTLE 219
           ++I+P+ ++  E++STL+
Sbjct: 684 VHISPESDALGESISTLK 701