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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960226
Clone id TST39A01NGRL0006_N11
Library
Length 628
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_N11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
AAGAAGGTAAAGCTGAATATGGAAGAAGCAACCGGATCAATGTCGAATGGACTGAAAACA
CCTCAATGGAATGTGATAACCACCAAGGATGCAAGAAATTGCAACGGTCCACTGCTGTCC
ACACCGAAAGAGACCAAAGAAGGCTGAAGATACGTTGTTTTGGGGGAAAAACAGCAGGGG
TTCCGTCACCAAGGAAAGGTCGCAGAGGATGTAGAGGGTAGGGAGTGGAAGAGGGATGTT
TTGGTCCTATGCTGCAGAAAAACCAGCAACCAAAAGTTGGAGAAACAACACCAGGAAAGA
GGTATCCGATGGCCGATCAAGTGGGGGAAAGGTGACCGCCTGAGGTATACAGTCCACAAA
ACATAGGTAAGGGCTGAAAAAAACCGCAGCCAGCAGGGAGGGTCTGGGGAGATGGAGCGT
CTGAAAGAGGAGGATGATGGGAGGGTGGATGATGGCAAAATGCTGGAACAGCCTGTATAA
AACGCTGGTCAACAGGGGATATCTTTCGCGATGAAAGTCCTCCAATGGGCCTCCAAAACC
TAGGCGATAGAAAGCAGCAGCTCTGATACCATGTCGGAGTGCGCAACGGAAGCAGAGAGA
GAAGAGACAAACCACGCGAGAAACACAA
■■Homology search results ■■ -
sp_hit_id Q46RX3
Definition sp|Q46RX3|NAPA_RALEJ Periplasmic nitrate reductase OS=Ralstonia eutropha (strain JMP134)
Align length 23
Score (bit) 33.1
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960226|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_N11, 5'
         (628 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q46RX3|NAPA_RALEJ Periplasmic nitrate reductase OS=Ralstonia ...    33   1.2  
sp|A1JL26|NAPA_YERE8 Periplasmic nitrate reductase OS=Yersinia e...    32   3.5  
sp|A4XWM0|NAPA_PSEMY Periplasmic nitrate reductase OS=Pseudomona...    31   4.6  
sp|A4Z0A1|NAPA_BRASO Periplasmic nitrate reductase OS=Bradyrhizo...    31   4.6  
sp|A5ED21|NAPA_BRASB Periplasmic nitrate reductase OS=Bradyrhizo...    31   4.6  
sp|Q0VCL3|ATG3_BOVIN Autophagy-related protein 3 OS=Bos taurus G...    31   4.6  
sp|A7MI22|SYP_ENTS8 Prolyl-tRNA synthetase OS=Enterobacter sakaz...    31   6.0  
sp|Q9QZM6|NCKX1_RAT Sodium/potassium/calcium exchanger 1 OS=Ratt...    30   7.8  
sp|P70662|LDB1_MOUSE LIM domain-binding protein 1 OS=Mus musculu...    30   7.8  
sp|Q86U70|LDB1_HUMAN LIM domain-binding protein 1 OS=Homo sapien...    30   7.8  
sp|O42252|LDB1_CHICK LIM domain-binding protein 1 OS=Gallus gall...    30   7.8  

>sp|Q46RX3|NAPA_RALEJ Periplasmic nitrate reductase OS=Ralstonia
           eutropha (strain JMP134) GN=napA PE=3 SV=1
          Length = 831

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 280 EKQHQERGIRWPIKWGKGDRLRY 348
           ++ H+ERG+RWP+  GK  R RY
Sbjct: 651 DRYHEERGLRWPVVNGKETRWRY 673


>sp|A1JL26|NAPA_YERE8 Periplasmic nitrate reductase OS=Yersinia
           enterocolitica serotype O:8 / biotype 1B (strain 8081)
           GN=napA PE=3 SV=1
          Length = 831

 Score = 31.6 bits (70), Expect = 3.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 280 EKQHQERGIRWPIKWGKGDRLRY 348
           ++ HQERG+RWP+  GK    RY
Sbjct: 649 DRYHQERGLRWPVVNGKETLWRY 671


>sp|A4XWM0|NAPA_PSEMY Periplasmic nitrate reductase OS=Pseudomonas
           mendocina (strain ymp) GN=napA PE=3 SV=1
          Length = 834

 Score = 31.2 bits (69), Expect = 4.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 280 EKQHQERGIRWPIKWGKGDRLRY 348
           +  H ERG+RWP+  GK  R RY
Sbjct: 651 DSYHAERGLRWPVVDGKETRWRY 673


>sp|A4Z0A1|NAPA_BRASO Periplasmic nitrate reductase
           OS=Bradyrhizobium sp. (strain ORS278) GN=napA PE=3 SV=1
          Length = 834

 Score = 31.2 bits (69), Expect = 4.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 280 EKQHQERGIRWPIKWGKGDRLRY 348
           E  H+ERG+RWP+  GK  R R+
Sbjct: 654 EAYHKERGLRWPVVDGKETRWRF 676


>sp|A5ED21|NAPA_BRASB Periplasmic nitrate reductase
           OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
           GN=napA PE=3 SV=1
          Length = 834

 Score = 31.2 bits (69), Expect = 4.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 280 EKQHQERGIRWPIKWGKGDRLRY 348
           E  H+ERG+RWP+  GK  R R+
Sbjct: 654 EAYHKERGLRWPVVDGKETRWRF 676


>sp|Q0VCL3|ATG3_BOVIN Autophagy-related protein 3 OS=Bos taurus
           GN=ATG3 PE=2 SV=1
          Length = 314

 Score = 31.2 bits (69), Expect = 4.6
 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
 Frame = +1

Query: 319 KWGKGDRLR----------YTVHKT*VRAEKNRSQQGGSGEMERLKEEDDGRVDDGKMLE 468
           +W  G+ L+          + V K  V   K   Q   S E+E + EEDDG   DG  ++
Sbjct: 54  QWATGEELKVKAYLPSGKQFLVTKN-VPCYKRCKQMEYSDELEAIIEEDDG---DGGWVD 109

Query: 469 QPV*NAGQQGISFAMKVLQWASKT*AIESSSSDTMSECATEAEREE 606
               N G  GI+ A+K +        +ES  S  + +C+   E EE
Sbjct: 110 -TYHNTGIAGITEAVKEI-------TLESKDSIKLQDCSALCEEEE 147


>sp|A7MI22|SYP_ENTS8 Prolyl-tRNA synthetase OS=Enterobacter
           sakazakii (strain ATCC BAA-894) GN=proS PE=3 SV=1
          Length = 572

 Score = 30.8 bits (68), Expect = 6.0
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +1

Query: 172 QQGFRHQGKVAEDVEGREWKRDVLVLCC-----RKTSNQKLEKQHQERGIRWP 315
           Q G ++   +   V+G + +  VL + C      +     +E+ H ERGI WP
Sbjct: 416 QLGTKYSDALKASVQGEDGRNQVLTMGCYGIGVTRVVAAAIEQNHDERGIVWP 468


>sp|Q9QZM6|NCKX1_RAT Sodium/potassium/calcium exchanger 1 OS=Rattus
           norvegicus GN=Slc24a1 PE=2 SV=1
          Length = 1181

 Score = 30.4 bits (67), Expect = 7.8
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
 Frame = +1

Query: 355 HKT*VRAEKNRSQQGGSGEMERLKEEDDGRVD-DGKMLEQPV*NAGQQGISFAMKVLQWA 531
           H+    AE    +  G  E E  ++E +G  + +GK +EQ     G+             
Sbjct: 789 HEGETEAEGKEVEHEGETEAEGTEDEQEGETEAEGKEVEQE----GET------------ 832

Query: 532 SKT*AIESSSSDTMSECATEAEREETNHARNT 627
                 E+   +   E  TEAER+ETNH   T
Sbjct: 833 ------EAEGKEVEHEVETEAERKETNHEGET 858


>sp|P70662|LDB1_MOUSE LIM domain-binding protein 1 OS=Mus musculus
           GN=Ldb1 PE=1 SV=2
          Length = 411

 Score = 30.4 bits (67), Expect = 7.8
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
 Frame = -1

Query: 244 PKHPSST------PYPLHP---LRPFLGDGTPAVFPPKQRIFSLLWSLSVWTAVDRCNFL 92
           P HP +       P P++P   L P +G  TP       RIF L   L  WT  + C+ L
Sbjct: 31  PFHPGTMLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWT--EECDNL 88

Query: 91  HPWWLSHSIEVF 56
             WW + + E F
Sbjct: 89  --WWDAFTTEFF 98


>sp|Q86U70|LDB1_HUMAN LIM domain-binding protein 1 OS=Homo sapiens
           GN=LDB1 PE=2 SV=2
          Length = 411

 Score = 30.4 bits (67), Expect = 7.8
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
 Frame = -1

Query: 244 PKHPSST------PYPLHP---LRPFLGDGTPAVFPPKQRIFSLLWSLSVWTAVDRCNFL 92
           P HP +       P P++P   L P +G  TP       RIF L   L  WT  + C+ L
Sbjct: 31  PFHPGTMLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWT--EECDNL 88

Query: 91  HPWWLSHSIEVF 56
             WW + + E F
Sbjct: 89  --WWDAFTTEFF 98
tr_hit_id Q7SXB6
Definition tr|Q7SXB6|Q7SXB6_DANRE CDKN1A interacting zinc finger protein 1 OS=Danio rerio
Align length 102
Score (bit) 34.3
E-value 6.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960226|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_N11, 5'
         (628 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7SXB6|Q7SXB6_DANRE CDKN1A interacting zinc finger protein 1 ...    34   6.3  
tr|Q2YZV9|Q2YZV9_9BACT Periplasmic protein TonB OS=uncultured ca...    34   8.1  
tr|A7TST4|A7TST4_VANPO Putative uncharacterized protein OS=Vande...    34   8.2  

>tr|Q7SXB6|Q7SXB6_DANRE CDKN1A interacting zinc finger protein 1
           OS=Danio rerio GN=ciz1 PE=2 SV=1
          Length = 521

 Score = 34.3 bits (77), Expect = 6.3
 Identities = 23/102 (22%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
 Frame = +1

Query: 313 PIKWGKGDRLRYTVHKT*VRAEKNRSQQGGSGEMERLKEEDDGRVDDGKMLEQPV*NAGQ 492
           P+K  +G RL    +++    +   S +  S  +   +E+D+G     + +E     A  
Sbjct: 26  PLKKHRGQRLNEQDNESANGDKTQHSPKENSASISDHEEDDNGNAQLEEDIEDQSRAAEV 85

Query: 493 QGISFAMKV-LQWASKT*AIESSSSDTMSECATEAEREETNH 615
           QG+  ++KV +Q +S++ A  +S  +T++    + E++ + H
Sbjct: 86  QGVGTSLKVTIQRSSESRAFSTSPEETVAGAGHDGEKDRSKH 127


>tr|Q2YZV9|Q2YZV9_9BACT Periplasmic protein TonB OS=uncultured
           candidate division WS3 bacterium GN=tonB PE=4 SV=1
          Length = 273

 Score = 33.9 bits (76), Expect = 8.1
 Identities = 23/60 (38%), Positives = 30/60 (50%)
 Frame = +3

Query: 246 PMLQKNQQPKVGETTPGKRYPMADQVGER*PPEVYSPQNIGKG*KKPQPAGRVWGDGASE 425
           P  +K ++PKV +T P  +    D V E+ PPE   PQ    G    + AG    DGASE
Sbjct: 95  PEPKKKEEPKVPKTEPVDQKKPQDAVPEKKPPESEVPQAQVSGESATKDAGD--SDGASE 152


>tr|A7TST4|A7TST4_VANPO Putative uncharacterized protein
           OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM
           70294) GN=Kpol_325p1 PE=4 SV=1
          Length = 876

 Score = 33.9 bits (76), Expect = 8.2
 Identities = 29/102 (28%), Positives = 55/102 (53%)
 Frame = +1

Query: 166 EKQQGFRHQGKVAEDVEGREWKRDVLVLCCRKTSNQKLEKQHQERGIRWPIKWGKGDRLR 345
           EK+Q  R Q +  E++E ++ K  VL+    K    + +K+ +ER I   I+  + ++ R
Sbjct: 602 EKEQ-LRLQKEEEEELERQKAK--VLMELKEKEKAAQAKKEEEERIINEKIRLEE-EKER 657

Query: 346 YTVHKT*VRAEKNRSQQGGSGEMERLKEEDDGRVDDGKMLEQ 471
               K  + AEK R ++    E E+LK+E++ R+   K+ ++
Sbjct: 658 LEAEKARLDAEKARKEEEERMEAEKLKQEEEERIRLDKLKQE 699