DK960228 |
Clone id |
TST39A01NGRL0006_N13 |
Library |
TST39 |
Length |
581 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_N13. 5' end sequence. |
Accession |
DK960228 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL2277Contig1 |
Sequence |
GAGGGATCGGTTTCATTTCTCGTAGCGAAGAAGCGTGCCCTCTTCTCTGTGCCTGCCTTT GCAAGCCTCGACAGGAGGAGGAGCGACGACAGCCTCATCATCTTGTTCATCTCGTCTCTC TGCTGCTTCCTCCCAGCTGTGGCGATCTCAGGTTTGGCTACCTCCTCTCGCTCGTCAGAG CACGCACCCAGGCCTCCAACTTGCATTTGTGTGTGAAACAGCAGTCGAAATAAATGGTGT CTCCTCGACCTATGGTGTTGATGCACCCTCCCCTGCCTTCGGATCTGTGATTCGAGTCTC TAAACACCTCAAGGTCTACCATGTCCCCAAACATCCCAGTTTCTACCTGCAAGGCTGTGA GGGAGAGCTAAAGGATATTCTTATTAGCTGGAAGGGTAAGCCTCTCTCAGCGAATCTCCC CTATTACGTTCATTTCCTTCTTGACTTTGATGGACAGCAGGTGAAATTCTTTGCGCATCT CACGAAGGATGAGTTTGAGGTCGTTTGAAGTTCAGCTTCAATAAACATAGCCGTGGCGAT CCGTTTACACATAAGTGGCCAAATGTTTCCTGATGGATGTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P80680 |
Definition |
sp|P80680|FTRV_MAIZE Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays |
Align length |
81 |
Score (bit) |
76.6 |
E-value |
8.0e-14 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960228|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0006_N13, 5' (581 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P80680|FTRV_MAIZE Ferredoxin-thioredoxin reductase, variable ... 77 8e-14 sp|Q55781|FTRV_SYNY3 Ferredoxin-thioredoxin reductase, variable ... 58 3e-08 sp|P24018|FTRV_SYNP6 Ferredoxin-thioredoxin reductase, variable ... 57 9e-08 sp|P38365|FTRV_SPIOL Ferredoxin-thioredoxin reductase, variable ... 57 9e-08 sp|O93829|PGTA_CANAL Geranylgeranyl transferase type-2 subunit a... 30 6.7 sp|Q9BQG0|MBB1A_HUMAN Myb-binding protein 1A OS=Homo sapiens GN=... 30 6.7 sp|Q9LV17|BH079_ARATH Transcription factor bHLH79 OS=Arabidopsis... 30 8.7
>sp|P80680|FTRV_MAIZE Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays PE=1 SV=1 Length = 97
Score = 76.6 bits (187), Expect = 8e-14 Identities = 39/81 (48%), Positives = 52/81 (64%), Gaps = 2/81 (2%) Frame = +2
Query: 263 APSPAFGSVIRVSKHLKVYHVPKHPSFYLQGCEGELKDILISWKGKPLSANLPYYVHFLL 442 A +P G +RV+ L+VYHV K P +QG EG +K + WKGK ++AN P+ V F L Sbjct: 13 AAAPKIGRRVRVTAPLRVYHVLKAPDLDIQGMEGVVKQYVCVWKGKRVTANFPFKVEFEL 72
Query: 443 DFDGQ--QVKFFAHLTKDEFE 499 +GQ V+FFAHL +DEFE Sbjct: 73 AVEGQPKPVRFFAHLREDEFE 93
>sp|Q55781|FTRV_SYNY3 Ferredoxin-thioredoxin reductase, variable chain OS=Synechocystis sp. (strain PCC 6803) GN=ftrV PE=1 SV=1 Length = 75
Score = 58.2 bits (139), Expect = 3e-08 Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 2/73 (2%) Frame = +2
Query: 281 GSVIRVSKHLKVYHVPKHP--SFYLQGCEGELKDILISWKGKPLSANLPYYVHFLLDFDG 454 G +RV+ + VYH P+H +F LQG EGE+ +L W+G+P+SANLP V F Sbjct: 4 GDRVRVTSSVVVYHHPEHKKTAFDLQGMEGEVAAVLTEWQGRPISANLPVLVKF------ 57
Query: 455 QQVKFFAHLTKDE 493 + +F AH DE Sbjct: 58 -EQRFKAHFRPDE 69
>sp|P24018|FTRV_SYNP6 Ferredoxin-thioredoxin reductase, variable chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ftrV PE=1 SV=1 Length = 73
Score = 56.6 bits (135), Expect = 9e-08 Identities = 33/75 (44%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Frame = +2
Query: 281 GSVIRVSKHLKVYHVPKH--PSFYLQGCEGELKDILISWKGKPLSANLPYYVHFLLDFDG 454 G +RV + + VYH P H +F L+ EGE+ IL W GKP+SAN PY V F Sbjct: 4 GDRVRVKESVVVYHHPDHRNQAFDLKDAEGEIAAILTEWNGKPISANFPYLVSF------ 57
Query: 455 QQVKFFAHLTKDEFE 499 KF AHL E E Sbjct: 58 -SNKFRAHLRDFELE 71
>sp|P38365|FTRV_SPIOL Ferredoxin-thioredoxin reductase, variable chain, chloroplastic OS=Spinacia oleracea GN=FTRV PE=1 SV=2 Length = 174
Score = 56.6 bits (135), Expect = 9e-08 Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 16/122 (13%) Frame = +2
Query: 182 THPGLQLAFVCETAVEINGVSSTYGVDAPSPA--------------FGSVIRVSKHLKVY 319 T +LA CE A++ + S+ G D+ S + G ++V LKVY Sbjct: 52 TRTRARLAICCEVALKSD---SSTGFDSSSSSPPEEDEELKKNLEKVGCKVKVKSPLKVY 108
Query: 320 HVPKHPSFYLQ-GCEGELKDILISWKGKPLSANLPYYVHFLLDF-DGQQVKFFAHLTKDE 493 HVPK P L G +K + WKGK +S N P+ V + +D D VK HL ++E Sbjct: 109 HVPKLPEVELTPDMVGVIKQYVGFWKGKYISPNYPFKVEYRIDVPDRGSVKLVVHLKEEE 168
Query: 494 FE 499 FE Sbjct: 169 FE 170
>sp|O93829|PGTA_CANAL Geranylgeranyl transferase type-2 subunit alpha OS=Candida albicans GN=BET4 PE=3 SV=1 Length = 371
Score = 30.4 bits (67), Expect = 6.7 Identities = 17/70 (24%), Positives = 35/70 (50%) Frame = -2
Query: 505 NDLKLILREMRKEFHLLSIKVKKEMNVIGEIR*ERLTLPANKNIL*LSLTALQVETGMFG 326 ND LIL+ EF+ ++K++K+ + +P N++ Q + +FG Sbjct: 169 NDTTLILKINLDEFNYTTLKIQKDFSNFSAWHNRTKLIPKIYNLIQQQQQQQQKDGKIFG 228
Query: 325 DMVDLEVFRD 296 D+ +E+F++ Sbjct: 229 DLPGIELFQN 238
>sp|Q9BQG0|MBB1A_HUMAN Myb-binding protein 1A OS=Homo sapiens GN=MYBBP1A PE=1 SV=2 Length = 1328
Score = 30.4 bits (67), Expect = 6.7 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 10/70 (14%) Frame = -1
Query: 578 IHQETFGHLCVNGSPRLCLLKLNFKRPQTH----------PS*DAQRISPAVHQSQEGNE 429 + + FGH+C + +PR L L+ P+T D +R+ A +S+EG + Sbjct: 669 VARSVFGHICSHLTPRALQLILDVLNPETSEDENDRVVVTDDSDERRLKGAEDKSEEGED 728
Query: 428 RNRGDSLREA 399 +S E+ Sbjct: 729 NRSSESEEES 738
>sp|Q9LV17|BH079_ARATH Transcription factor bHLH79 OS=Arabidopsis thaliana GN=BHLH79 PE=2 SV=1 Length = 281
Score = 30.0 bits (66), Expect = 8.7 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = +3
Query: 261 MHPPLPSDL*FESLNTSRSTMSPNIPVSTCKAVRES*RIFLLAGRV 398 M PPL +D F + N S T+S P AVR R+ + +GRV Sbjct: 1 MDPPLVNDSSFSAANPSSYTLSEIWPFPVNDAVRSGLRLAVNSGRV 46
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A8IXL0 |
Definition |
tr|A8IXL0|A8IXL0_BRACM Lipoic acid synthase-like protein OS=Brassica campestris |
Align length |
74 |
Score (bit) |
80.9 |
E-value |
5.0e-14 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960228|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0006_N13, 5' (581 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A8IXL0|A8IXL0_BRACM Lipoic acid synthase-like protein OS=Bras... 81 5e-14 tr|Q9FHL4|Q9FHL4_ARATH Similarity to ferredoxin-thioredoxin redu... 80 6e-14 tr|A9NX05|A9NX05_PICSI Putative uncharacterized protein OS=Picea... 80 8e-14 tr|Q9FT94|Q9FT94_ARATH Lipoic acid synthase-like protein OS=Arab... 79 2e-13 tr|Q8LBP6|Q8LBP6_ARATH Putative uncharacterized protein (At5g084... 79 2e-13 tr|A9SPT5|A9SPT5_PHYPA Predicted protein OS=Physcomitrella paten... 79 2e-13 tr|A7QNQ7|A7QNQ7_VITVI Chromosome undetermined scaffold_133, who... 78 3e-13 tr|A5B8T4|A5B8T4_VITVI Putative uncharacterized protein OS=Vitis... 78 3e-13 tr|B6UCW8|B6UCW8_MAIZE Ferredoxin-thioredoxin reductase, variabl... 77 9e-13 tr|B6TW28|B6TW28_MAIZE Ferredoxin-thioredoxin reductase, variabl... 77 9e-13 tr|A9RF67|A9RF67_PHYPA Intraflagellar transport protein IFT122 O... 76 2e-12 tr|Q7XUM0|Q7XUM0_ORYSJ OSJNBa0074L08.8 protein OS=Oryza sativa s... 74 5e-12 tr|Q6H5V4|Q6H5V4_ORYSJ Os02g0638300 protein OS=Oryza sativa subs... 74 5e-12 tr|Q0JBJ5|Q0JBJ5_ORYSJ Os04g0528800 protein OS=Oryza sativa subs... 74 5e-12 tr|Q01HM9|Q01HM9_ORYSA OSIGBa0115K01-H0319F09.23 protein OS=Oryz... 74 5e-12 tr|A2XVR8|A2XVR8_ORYSI Putative uncharacterized protein OS=Oryza... 74 5e-12 tr|A2X7M2|A2X7M2_ORYSI Putative uncharacterized protein OS=Oryza... 74 5e-12 tr|B6U6T1|B6U6T1_MAIZE Ferredoxin-thioredoxin reductase, variabl... 72 3e-11 tr|A9RF65|A9RF65_PHYPA Predicted protein OS=Physcomitrella paten... 72 3e-11 tr|B4FEJ0|B4FEJ0_MAIZE Putative uncharacterized protein OS=Zea m... 71 4e-11 tr|A9SQ16|A9SQ16_PHYPA Predicted protein (Fragment) OS=Physcomit... 71 5e-11 tr|Q94IK1|Q94IK1_SOLTU Subunit A of ferredoxin-thioredoxin-reduc... 70 9e-11 tr|B6TCL0|B6TCL0_MAIZE Ferredoxin-thioredoxin reductase, variabl... 68 4e-10 tr|Q3MG59|Q3MG59_ANAVT Ferredoxin thioredoxin reductase, alpha c... 61 4e-08 tr|Q2JNP4|Q2JNP4_SYNJB Ferredoxin-thioredoxin reductase, variabl... 60 9e-08 tr|Q8YU85|Q8YU85_ANASP Ferredoxin-thioredoxin reductase variable... 58 3e-07 tr|A3AVS6|A3AVS6_ORYSJ Putative uncharacterized protein OS=Oryza... 58 4e-07 tr|B0JFI4|B0JFI4_MICAN Ferredoxin-thioredoxin reductase variable... 57 7e-07 tr|Q31P58|Q31P58_SYNE7 Ferredoxin-thioredoxin reductase variable... 57 1e-06 tr|B1WXG1|B1WXG1_CYAA5 Ferredoxin thioredoxin reductase, variabl... 56 1e-06
>tr|A8IXL0|A8IXL0_BRACM Lipoic acid synthase-like protein OS=Brassica campestris PE=2 SV=1 Length = 155
Score = 80.9 bits (198), Expect = 5e-14 Identities = 42/74 (56%), Positives = 51/74 (68%), Gaps = 1/74 (1%) Frame = +2
Query: 281 GSVIRVSKHLKVYHVPKHPSFYLQGCEGELKDILISWKGKPLSANLPYYVHFLLDFDGQ- 457 GS IRV+ LKVYHV + P L+G EG+LKD + WKGK +SANLPY V F + +G+ Sbjct: 78 GSSIRVTAPLKVYHVNRVPEVDLEGMEGKLKDYVAVWKGKRISANLPYKVEFFKEVEGRG 137
Query: 458 QVKFFAHLTKDEFE 499 VKF AHL DEFE Sbjct: 138 PVKFVAHLKDDEFE 151
>tr|Q9FHL4|Q9FHL4_ARATH Similarity to ferredoxin-thioredoxin reductase variable chain (Putative uncharacterized protein At5g23440) (At5g23440) OS=Arabidopsis thaliana GN=At5g23440 PE=2 SV=1 Length = 182
Score = 80.5 bits (197), Expect = 6e-14 Identities = 43/88 (48%), Positives = 59/88 (67%), Gaps = 2/88 (2%) Frame = +2
Query: 242 SSTYGVDAPSPA-FGSVIRVSKHLKVYHVPKHPSFYLQGCEGELKDILISWKGKPLSANL 418 SS ++A + A GS +RV+ LKVYHV + P L+G EG+LKD + WKGK +SANL Sbjct: 91 SSEEEIEAEAKAKIGSRVRVTAPLKVYHVNRVPEVDLEGMEGKLKDYVAVWKGKRISANL 150
Query: 419 PYYVHFLLDFDGQ-QVKFFAHLTKDEFE 499 PY + F + +G+ VKF +HL +DEFE Sbjct: 151 PYKIEFFKEIEGRGLVKFVSHLKEDEFE 178
>tr|A9NX05|A9NX05_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 100
Score = 80.1 bits (196), Expect = 8e-14 Identities = 37/73 (50%), Positives = 49/73 (67%) Frame = +2
Query: 281 GSVIRVSKHLKVYHVPKHPSFYLQGCEGELKDILISWKGKPLSANLPYYVHFLLDFDGQQ 460 G ++V LKVYHVPK P F L G EG + D + WKGK +SANLPY + F ++ G+ Sbjct: 25 GDRVKVRGPLKVYHVPKTPEFGLGGIEGVVNDYVGLWKGKRISANLPYKIQFNMEVGGRP 84
Query: 461 VKFFAHLTKDEFE 499 +KF AHL +DEF+ Sbjct: 85 IKFLAHLKEDEFD 97
>tr|Q9FT94|Q9FT94_ARATH Lipoic acid synthase-like protein OS=Arabidopsis thaliana GN=F8L15_140 PE=4 SV=1 Length = 477
Score = 79.0 bits (193), Expect = 2e-13 Identities = 38/74 (51%), Positives = 52/74 (70%), Gaps = 1/74 (1%) Frame = +2
Query: 281 GSVIRVSKHLKVYHVPKHPSFYLQGCEGELKDILISWKGKPLSANLPYYVHFLLDFDGQ- 457 G+ +RV+ LKVYHV + P L G EG +KD ++ WKGK +SANLP+ V F+ + +G+ Sbjct: 400 GARVRVTVPLKVYHVVRVPEVELMGMEGFIKDYVVLWKGKKISANLPFKVQFVKEIEGRG 459
Query: 458 QVKFFAHLTKDEFE 499 VKFF HL +DEFE Sbjct: 460 PVKFFTHLKEDEFE 473
>tr|Q8LBP6|Q8LBP6_ARATH Putative uncharacterized protein (At5g08410) (Putative lipoic acid synthase) OS=Arabidopsis thaliana GN=At5g08410/F8L15_140 PE=2 SV=1 Length = 184
Score = 79.0 bits (193), Expect = 2e-13 Identities = 38/74 (51%), Positives = 52/74 (70%), Gaps = 1/74 (1%) Frame = +2
Query: 281 GSVIRVSKHLKVYHVPKHPSFYLQGCEGELKDILISWKGKPLSANLPYYVHFLLDFDGQ- 457 G+ +RV+ LKVYHV + P L G EG +KD ++ WKGK +SANLP+ V F+ + +G+ Sbjct: 107 GARVRVTVPLKVYHVVRVPEVELMGMEGFIKDYVVLWKGKKISANLPFKVQFVKEIEGRG 166
Query: 458 QVKFFAHLTKDEFE 499 VKFF HL +DEFE Sbjct: 167 PVKFFTHLKEDEFE 180
>tr|A9SPT5|A9SPT5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_133320 PE=4 SV=1 Length = 94
Score = 78.6 bits (192), Expect = 2e-13 Identities = 42/93 (45%), Positives = 57/93 (61%) Frame = +2
Query: 221 AVEINGVSSTYGVDAPSPAFGSVIRVSKHLKVYHVPKHPSFYLQGCEGELKDILISWKGK 400 AVE+ G S+ G G+ +RV LKVYHVPK+P + G EGE+K+++ ++KGK Sbjct: 2 AVELGGSRSSEG--EKKVEVGTKVRVKGSLKVYHVPKNPELDIDGLEGEVKEVVTTFKGK 59
Query: 401 PLSANLPYYVHFLLDFDGQQVKFFAHLTKDEFE 499 P+SA PY V L+ + KFF HL DEFE Sbjct: 60 PVSATFPYKVQ-LVTMGEESRKFFVHLKDDEFE 91
>tr|A7QNQ7|A7QNQ7_VITVI Chromosome undetermined scaffold_133, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00002625001 PE=4 SV=1 Length = 149
Score = 78.2 bits (191), Expect = 3e-13 Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 10/106 (9%) Frame = +2
Query: 212 CETAVEINGVSSTYGV-------DAPSPA--FGSVIRVSKHLKVYHVPKHPSFYLQGCEG 364 CE A+ + +S+ DA A G+ +RV LKV+HVP+ P L G EG Sbjct: 39 CEVALRSDSATSSSSAAFEQVQEDAAEEAGKIGARVRVKVPLKVFHVPRVPEVDLTGMEG 98
Query: 365 ELKDILISWKGKPLSANLPYYVHFLLDFDGQ-QVKFFAHLTKDEFE 499 LK + WKGK +SANLP+ + F+ D +G+ VKFFAHL DEFE Sbjct: 99 VLKQYVGVWKGKRISANLPFKIGFVADIEGRGPVKFFAHLKDDEFE 144
>tr|A5B8T4|A5B8T4_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024425 PE=4 SV=1 Length = 168
Score = 78.2 bits (191), Expect = 3e-13 Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 10/106 (9%) Frame = +2
Query: 212 CETAVEINGVSSTYGV-------DAPSPA--FGSVIRVSKHLKVYHVPKHPSFYLQGCEG 364 CE A+ + +S+ DA A G+ +RV LKV+HVP+ P L G EG Sbjct: 58 CEVALRSDSATSSSSAAFEQVQEDAAEEAGKIGARVRVKVPLKVFHVPRVPEVDLTGMEG 117
Query: 365 ELKDILISWKGKPLSANLPYYVHFLLDFDGQ-QVKFFAHLTKDEFE 499 LK + WKGK +SANLP+ + F+ D +G+ VKFFAHL DEFE Sbjct: 118 VLKQYVGVWKGKRISANLPFKIGFVADIEGRGPVKFFAHLKDDEFE 163
>tr|B6UCW8|B6UCW8_MAIZE Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays PE=2 SV=1 Length = 157
Score = 76.6 bits (187), Expect = 9e-13 Identities = 39/81 (48%), Positives = 52/81 (64%), Gaps = 2/81 (2%) Frame = +2
Query: 263 APSPAFGSVIRVSKHLKVYHVPKHPSFYLQGCEGELKDILISWKGKPLSANLPYYVHFLL 442 A +P G +RV+ L+VYHV K P +QG EG +K + WKGK ++AN P+ V F L Sbjct: 72 AAAPKIGRRVRVTAPLRVYHVLKAPDLDIQGMEGVVKQYVCVWKGKRVTANFPFKVEFEL 131
Query: 443 DFDGQ--QVKFFAHLTKDEFE 499 +GQ V+FFAHL +DEFE Sbjct: 132 AVEGQPKPVRFFAHLREDEFE 152
>tr|B6TW28|B6TW28_MAIZE Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays PE=2 SV=1 Length = 153
Score = 76.6 bits (187), Expect = 9e-13 Identities = 39/81 (48%), Positives = 52/81 (64%), Gaps = 2/81 (2%) Frame = +2
Query: 263 APSPAFGSVIRVSKHLKVYHVPKHPSFYLQGCEGELKDILISWKGKPLSANLPYYVHFLL 442 A +P G +RV+ L+VYHV K P +QG EG +K + WKGK ++AN P+ V F L Sbjct: 68 AAAPKIGRRVRVTAPLRVYHVLKAPDLDIQGMEGVVKQYVCVWKGKRVTANFPFKVEFEL 127
Query: 443 DFDGQ--QVKFFAHLTKDEFE 499 +GQ V+FFAHL +DEFE Sbjct: 128 AVEGQPKPVRFFAHLREDEFE 148
|