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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960236
Clone id TST39A01NGRL0006_N22
Library
Length 641
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_N22. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
TTGCGGAAGCTTTTCGCCTCCTTACCGATCCCGCGTTCATCGAGCAAGCATGGCGCGCCT
CTCTGTATTGACTACCCTTGCATATCTTCTGGTGGCCATCCTGGCTGTTTCCCAGCTTTT
AATTCTGCCTGCCTTAGGCCATGAGACTGGCCAACTTTATACCCCCGAGGACGATGCCCC
TGCTCCCGCGCCGTATGCTGAAGAATCGTCCGCAGGTGCACCGCTTAATCAGCCTCTGCT
TCACCTGGCTGCGCTCGCGCTTCCGTTCTTTTTCCCTGCTCTTCAGGCTCCCCGATCTTG
ATCCTAGGCCCATAAAGCCCATGGGAGAGATGGCGAAGTCCCCACAGTCTCCAAATGAAG
TAGTTTCTATGATGTAAATGTGCCAAGTGCATTCTTGGATTAATCATACGCCCTCTCTTA
ATTTATCATTCAAACACCAGAGTCTCACATGGACTTCATGGCCCCCAATATTCACCATCA
TCTACATGAACCCTAAATGCATTCCATCTATCTCTTAATTTGAGCAGCCCCATCATTCAG
ATGCCTTGCTTCCCTTTTGCTTAATTAACCTTTGCATTGTTTACTGAAACGAGAAATGAT
TAGCTCCACCCTTGAACAATGTGAATACTCTACTCATTTGT
■■Homology search results ■■ -
sp_hit_id P98167
Definition sp|P98167|SSPO_BOVIN SCO-spondin OS=Bos taurus
Align length 106
Score (bit) 36.2
E-value 0.15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960236|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_N22, 5'
         (641 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P98167|SSPO_BOVIN SCO-spondin OS=Bos taurus GN=SSPO PE=2 SV=2       36   0.15 
sp|Q00648|CSN7_EMENI COP9 signalosome complex subunit 7 OS=Emeri...    32   2.1  
sp|Q5IJ48|CRUM2_HUMAN Crumbs homolog 2 OS=Homo sapiens GN=CRB2 P...    32   3.7  
sp|Q02KH5|MTNC_PSEAB Enolase-phosphatase E1 OS=Pseudomonas aerug...    31   4.8  

>sp|P98167|SSPO_BOVIN SCO-spondin OS=Bos taurus GN=SSPO PE=2 SV=2
          Length = 5146

 Score = 36.2 bits (82), Expect = 0.15
 Identities = 32/106 (30%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
 Frame = +1

Query: 31   PRSSSKHGAPLCIDYPCISSGGHPGCF-PA----FNSACLRP*DWPTLYPRGRCPCSRAV 195
            P S ++  AP   D PC     HPGC+ P+     N+AC+   D P  +     P   AV
Sbjct: 3083 PASCAELSAPRGADQPC-----HPGCYCPSGMLLLNNACVPTQDCPCTHGGRLHPPGSAV 3137

Query: 196  C*RIVRRCTA*SASASPGCARASVLFPCSSGSPILILGP*SPWERW 333
                +R C   + S   G       +PC  G P       SPW  W
Sbjct: 3138 ----LRPCE--NCSCVSGLITNCTSWPCKEGQPTW-----SPWTPW 3172


>sp|Q00648|CSN7_EMENI COP9 signalosome complex subunit 7
           OS=Emericella nidulans GN=csnG PE=1 SV=1
          Length = 327

 Score = 32.3 bits (72), Expect = 2.1
 Identities = 22/66 (33%), Positives = 29/66 (43%)
 Frame = -1

Query: 254 AQPGEAEAD*AVHLRTILQHTAREQGHRPRGYKVGQSHGLRQAELKAGKQPGWPPEDMQG 75
           AQ  + E   AV +   L+    E G + +G   GQ  G  Q  L  GK  GW P D+  
Sbjct: 209 AQRRQKEHARAVAIEKTLEKWNAEGGEQLQGGNPGQGQGQGQGGL--GKNAGWKPRDLST 266

Query: 74  *SIQRG 57
              +RG
Sbjct: 267 AMFERG 272


>sp|Q5IJ48|CRUM2_HUMAN Crumbs homolog 2 OS=Homo sapiens GN=CRB2 PE=1
            SV=2
          Length = 1285

 Score = 31.6 bits (70), Expect = 3.7
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
 Frame = +1

Query: 52   GAPLCIDYPCISSGGHPGCFPAFNSACLRP*DWPT----LYPRGRCPCSRAVC 198
            GAP+C   PC+  G     F AF  AC    + P     + P    PC+R  C
Sbjct: 1056 GAPVCAPSPCLHDGACRDLFDAFACACGPGWEGPRCEAHVDPCHSAPCARGRC 1108


>sp|Q02KH5|MTNC_PSEAB Enolase-phosphatase E1 OS=Pseudomonas
           aeruginosa (strain UCBPP-PA14) GN=mtnC PE=3 SV=1
          Length = 225

 Score = 31.2 bits (69), Expect = 4.8
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -1

Query: 293 GEPEEQGKRTEARAQPGEAEAD*AVHLRTILQHTAREQGHRPRGYKVGQ--SHGLRQAEL 120
           GEPE   +    RA+ GEA+AD    +  +LQ  A ++   P     G   + G R  +L
Sbjct: 41  GEPEVAAQLAAVRAESGEADADVERAIAILLQWIAEDRKATPLKALQGMVWAQGYRDGQL 100

Query: 119 KAGKQP 102
           K    P
Sbjct: 101 KGHVYP 106
tr_hit_id B8HM35
Definition tr|B8HM35|B8HM35_9CHRO Beta-galactosidase OS=Cyanothece sp. PCC 7425
Align length 83
Score (bit) 37.7
E-value 0.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960236|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_N22, 5'
         (641 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8HM35|B8HM35_9CHRO Beta-galactosidase OS=Cyanothece sp. PCC ...    38   0.60 
tr|A6QQG8|A6QQG8_BOVIN KRTAP9-2 protein OS=Bos taurus GN=KRTAP9-...    37   0.78 
tr|Q9TTS5|Q9TTS5_BOVIN SCO-spondin (Fragment) OS=Bos taurus GN=s...    36   1.7  
tr|A6C0B3|A6C0B3_9PLAN Putative uncharacterized protein OS=Planc...    36   2.3  
tr|B7P0J5|B7P0J5_IXOSC Putative uncharacterized protein OS=Ixode...    36   2.3  

>tr|B8HM35|B8HM35_9CHRO Beta-galactosidase OS=Cyanothece sp. PCC
           7425 GN=Cyan7425_3061 PE=4 SV=1
          Length = 456

 Score = 37.7 bits (86), Expect = 0.60
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
 Frame = -1

Query: 398 PRMHLAHLHHRNYFIWRLWGLRHLSHGLYGPRIKIGEPEEQGKRTEARAQPGE-AEAD*A 222
           PR+H+  LH     ++  WG+RHLS  L  P + I   E      +   + GE  ++D  
Sbjct: 326 PRLHMPWLHLVPDCVY--WGIRHLSETLQRPELPIRITENGCATLDELTETGEILDSDRI 383

Query: 221 VHLRTILQHTAR--EQGHRPRGY 159
           ++LR  L+   R  ++G+  RGY
Sbjct: 384 LYLRECLRSAQRAIQEGYPLRGY 406


>tr|A6QQG8|A6QQG8_BOVIN KRTAP9-2 protein OS=Bos taurus GN=KRTAP9-2
           PE=2 SV=1
          Length = 296

 Score = 37.4 bits (85), Expect = 0.78
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +1

Query: 64  CIDYPCISSGGHPGCFPAFNSACLRP*DWPTLYPRGRCPCSRAVC*RIVRRCTA*SASAS 243
           C+   C+SS   P C     S+C RP   PT Y      C R  C     + T  +    
Sbjct: 79  CLKPTCVSSCCQPTCC---ESSCCRPCCPPTCYQTSENSCCRTTC----CKPTCVTTCCQ 131

Query: 244 PGCARASVLFPC 279
           P C R+S   PC
Sbjct: 132 PNCGRSSCCQPC 143


>tr|Q9TTS5|Q9TTS5_BOVIN SCO-spondin (Fragment) OS=Bos taurus
           GN=sco-spondin PE=2 SV=1
          Length = 685

 Score = 36.2 bits (82), Expect = 1.7
 Identities = 32/106 (30%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
 Frame = +1

Query: 31  PRSSSKHGAPLCIDYPCISSGGHPGCF-PA----FNSACLRP*DWPTLYPRGRCPCSRAV 195
           P S ++  AP   D PC     HPGC+ P+     N+AC+   D P  +     P   AV
Sbjct: 186 PASCAELSAPRGADQPC-----HPGCYCPSGMLLLNNACVPTQDCPCTHGGRLHPPGSAV 240

Query: 196 C*RIVRRCTA*SASASPGCARASVLFPCSSGSPILILGP*SPWERW 333
               +R C   + S   G       +PC  G P       SPW  W
Sbjct: 241 ----LRPCE--NCSCVSGLITNCTSWPCKEGQPTW-----SPWTPW 275


>tr|A6C0B3|A6C0B3_9PLAN Putative uncharacterized protein
           OS=Planctomyces maris DSM 8797 GN=PM8797T_22793 PE=4
           SV=1
          Length = 907

 Score = 35.8 bits (81), Expect = 2.3
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 22  LPIPRSSSKHGAPLCIDYPCISSGGHPG 105
           LP+PR+ +   APL  D+P +  GGHPG
Sbjct: 390 LPVPRAINPPNAPLYYDFPPMPDGGHPG 417


>tr|B7P0J5|B7P0J5_IXOSC Putative uncharacterized protein OS=Ixodes
           scapularis GN=IscW_ISCW001395 PE=4 SV=1
          Length = 156

 Score = 35.8 bits (81), Expect = 2.3
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = -1

Query: 389 HLAHLHHRNYFIWRLWGLRHLSHGLYGPRIKIGEPEEQGKRTEARAQPGEAEAD 228
           H  H HH +Y   R W  R   + LYG    +G  E+QG+  E  A  GE E +
Sbjct: 54  HRRH-HHGHYPHVRRWPARRWGYPLYGSEDDVGAVEDQGEDAEEVAADGEEEEE 106