NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960239
Clone id TST39A01NGRL0006_O01
Library
Length 604
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_O01. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTTCTCTCTCTCCCTCTCTGCGCGCGCGCGTTTGTGTGTATGTGGGGGTTTACACAAAAC
CTCCCCTAATAAACTACACCTCGGGTTTTCTTACAATCGCACACACTGTCCGCCCTTTTT
CCTGCTACCATGCAGCGCTTTCATCTCCCTCTCTCTGCTCTGCTCCTCTTCCTCTCTCTC
TGCAGCTTCCATGGCGACCTTGCTCACGCACAGGACTTCAACTTCCCTACCGGGCGCAAC
CTCACCACGGGGTCTCTCACTTCTCTGAAGAACGGGGTTGTGGATTCCACAGGCACCCTC
ATCCTGGACGCCAGCACAGGCGAAGCACAGGCATTCTATGAATCGCCCGTCACTTTATAC
GATACTATAAGCGGCTCTGTGCACTCCTTTTCCACGTTCTTCACCTTCTCCTCGAACGCG
ACGAACGGGAATGGGACGGTGGCGTTCGTGGTGGTGCCCGACGCGGCCACGGTGGGGGGC
ATTGCGGGGGCAAGGAGCACATTTACCATTGAATTCAACACGTCCTGCGGAACAGGGGAA
TATAATAACAGTGATTGGTTCTATGGAGGGCATGCATATCCAGGATCAGGACGGGGACTG
GGGG
■■Homology search results ■■ -
sp_hit_id Q9VW47
Definition sp|Q9VW47|MED12_DROME Mediator of RNA polymerase II transcription subunit 12 OS=Drosophila melanogaster
Align length 97
Score (bit) 34.3
E-value 0.51
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960239|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_O01, 5'
         (604 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9VW47|MED12_DROME Mediator of RNA polymerase II transcriptio...    34   0.51 
sp|Q86W92|LIPB1_HUMAN Liprin-beta-1 OS=Homo sapiens GN=PPFIBP1 P...    32   1.9  
sp|P19588|LEC5_DOLBI Lectin DB58 OS=Dolichos biflorus PE=1 SV=2        32   3.3  
sp|P16270|LECN_PEA Non-seed lectin OS=Pisum sativum PE=2 SV=2          31   4.3  
sp|Q8N0Z3|CCD52_HUMAN Coiled-coil domain-containing protein 52 O...    31   5.5  
sp|Q02078|MEF2A_HUMAN Myocyte-specific enhancer factor 2A OS=Hom...    30   9.4  
sp|P03987|IGHG3_MOUSE Ig gamma-3 chain C region OS=Mus musculus ...    30   9.4  
sp|Q02910|CPN_DROME Calphotin OS=Drosophila melanogaster GN=Cpn ...    30   9.4  
sp|P46840|CTPB_MYCLE Cation-transporting P-type ATPase B OS=Myco...    30   9.5  

>sp|Q9VW47|MED12_DROME Mediator of RNA polymerase II transcription
           subunit 12 OS=Drosophila melanogaster GN=kto PE=1 SV=2
          Length = 2531

 Score = 34.3 bits (77), Expect = 0.51
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
 Frame = +1

Query: 205 HAQDFNFPTGRNLTTGSLTSLKNGVVD--STGTLILDASTGEAQAFYESPVTLYDTISGS 378
           + Q+ +  +    T+GSLT+  NG     STGT  +++ TG + +    PV    +    
Sbjct: 202 YQQNHDKSSSNGTTSGSLTAAGNGPASNGSTGTSSINSVTGSSASTNVIPVPSMASPLPP 261

Query: 379 VHXXXXXXXXXXNATNGNGTVAFVVVPDAATVGGIAG 489
           +H           A  G G  A  V+P   ++GG+ G
Sbjct: 262 IHSPANGQ----QAAPGGGVNAGSVMPTTGSLGGVVG 294


>sp|Q86W92|LIPB1_HUMAN Liprin-beta-1 OS=Homo sapiens GN=PPFIBP1 PE=1
           SV=2
          Length = 1011

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = -3

Query: 602 PSPRPDPGY-ACPP*NQSLLLYSPVPQDVLNSMVNVLLAPAMPPTVAASGTTTNATVPFP 426
           PSP P  G  +C P N S      VP++   +++ V +   +P TV+   +  +   P P
Sbjct: 378 PSPTPVMGSPSCDPFNTS------VPEEFHTTILQVSIPSLLPATVSMETSEKSKLTPKP 431

Query: 425 FVAFEEKVKNV 393
             +FEE   N+
Sbjct: 432 ETSFEENDGNI 442


>sp|P19588|LEC5_DOLBI Lectin DB58 OS=Dolichos biflorus PE=1 SV=2
          Length = 275

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 15/92 (16%)
 Frame = +1

Query: 328 QAFYESPVTLYDTISGSVHXXXXXXXXXXNATNGNGT---VAFVVVP---DAATVGGIAG 489
           +AFY SP+ +YD  +G+V            A N + +   +AF +VP   +  +  G  G
Sbjct: 69  RAFYSSPIQIYDKSTGAVASWATSFTANIFAPNKSSSADGIAFALVPVGSEPKSNSGFLG 128

Query: 490 ---------ARSTFTIEFNTSCGTGEYNNSDW 558
                    +  T  +EF+T      ++N+DW
Sbjct: 129 VFDSDVYDNSAQTVAVEFDT------FSNTDW 154


>sp|P16270|LECN_PEA Non-seed lectin OS=Pisum sativum PE=2 SV=2
          Length = 265

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
 Frame = +1

Query: 208 AQDFNFPT---GRNLTT--GSLTSLKNGVVDSTGTLILDAST---GEAQAFYESPVTLYD 363
           A  FNFP    G    T  G+   L NGV+  T +  +  +T      +A Y +PV L+D
Sbjct: 26  ALSFNFPKITPGNTAITLQGNAKILANGVLALTNSTQIPPTTTFPSTGRALYSTPVPLWD 85

Query: 364 TISGSVHXXXXXXXXXXNATNG----NGTVAFVVVPD 462
           + +G+V              +G    +G V F+  PD
Sbjct: 86  SATGNVASFVTSFSFVILNPSGRVPTDGLVFFIAPPD 122


>sp|Q8N0Z3|CCD52_HUMAN Coiled-coil domain-containing protein 52
           OS=Homo sapiens GN=CCDC52 PE=1 SV=1
          Length = 855

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = -3

Query: 569 PP*NQSLLLYSPVPQDVLNSMVNVLLAPAMPPTV 468
           PP  +S L +SP+ QDVL   V    AP +PPTV
Sbjct: 538 PPRQKSNLKFSPL-QDVLRRTVQTRPAPRLPPTV 570


>sp|Q02078|MEF2A_HUMAN Myocyte-specific enhancer factor 2A OS=Homo
           sapiens GN=MEF2A PE=1 SV=1
          Length = 507

 Score = 30.0 bits (66), Expect = 9.4
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -3

Query: 599 SPRPDPGYACPP*NQSLLLYSPVPQDVLNSMVNVLLAPAMPPTVAASGTTTNATVP 432
           SP PD  Y   P  +    Y  + ++  N M N  +AP +PP   +   T   T P
Sbjct: 98  SPDPDTSYVLTPHTEEK--YKKINEEFDNMMRNHKIAPGLPPQNFSMSVTVPVTSP 151


>sp|P03987|IGHG3_MOUSE Ig gamma-3 chain C region OS=Mus musculus
           PE=1 SV=2
          Length = 398

 Score = 30.0 bits (66), Expect = 9.4
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
 Frame = -3

Query: 602 PSPRPDPGYACPP*N----QSLLLYSPVPQDVLNSMVNVLLAPAMPPTVAASGTTTNATV 435
           P P   PG +CPP N     S+ ++ P P+D L  M+      ++ P V       +   
Sbjct: 101 PKPSTPPGSSCPPGNILGGPSVFIFPPKPKDAL--MI------SLTPKVTCVVVDVSEDD 152

Query: 434 PFPFVAFEEKVKNVEKECTEPLIVSYKVT 348
           P   V++    K V    T+P    Y  T
Sbjct: 153 PDVHVSWFVDNKEVHTAWTQPREAQYNST 181


>sp|Q02910|CPN_DROME Calphotin OS=Drosophila melanogaster GN=Cpn
           PE=1 SV=2
          Length = 864

 Score = 30.0 bits (66), Expect = 9.4
 Identities = 23/75 (30%), Positives = 31/75 (41%)
 Frame = -3

Query: 497 LLAPAMPPTVAASGTTTNATVPFPFVAFEEKVKNVEKECTEPLIVSYKVTGDS*NACASP 318
           ++AP + P VA +     A  P P    E  V  +  EC  PLI    V      A A P
Sbjct: 186 VVAPVLAPAVAPAVAPVVAETPAPPPVAEIPVATIP-ECVAPLIPEVSVVATKPLAAAEP 244

Query: 317 VLASRMRVPVESTTP 273
           V+ +    P  + TP
Sbjct: 245 VVVA----PPATETP 255


>sp|P46840|CTPB_MYCLE Cation-transporting P-type ATPase B
           OS=Mycobacterium leprae GN=ctpB PE=3 SV=2
          Length = 750

 Score = 30.0 bits (66), Expect = 9.5
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 193 GDLAHAQDFNFPTGRNLTTGSLTSLKNGVVDSTGTLILDASTGEAQAFYESPVT 354
           G+L   Q F    G  +T   +      V+D T T+ + A TGEA+  + SP +
Sbjct: 263 GELKKQQHFLVRPGETITADGV------VIDGTATIDMSAITGEARPVHASPAS 310
tr_hit_id B8AXJ4
Definition tr|B8AXJ4|B8AXJ4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 120
Score (bit) 38.5
E-value 0.31
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960239|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_O01, 5'
         (604 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8AXJ4|B8AXJ4_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.31 
tr|Q6L4L2|Q6L4L2_ORYSJ Os05g0125200 protein OS=Oryza sativa subs...    38   0.40 
tr|A3AZI1|A3AZI1_ORYSJ Putative uncharacterized protein OS=Oryza...    38   0.40 
tr|B4MR63|B4MR63_DROWI GK22008 OS=Drosophila willistoni GN=GK220...    37   0.88 
tr|A3Z7P4|A3Z7P4_9SYNE Putative uncharacterized protein OS=Synec...    37   0.89 
tr|B0XA36|B0XA36_CULQU Putative uncharacterized protein OS=Culex...    35   2.6  
tr|B8B0G9|B8B0G9_ORYSI Putative uncharacterized protein OS=Oryza...    35   3.4  
tr|Q9AQG4|Q9AQG4_9FIRM CelE OS=Caldicellulosiruptor sp. Tok7B.1 ...    34   5.8  
tr|Q89P83|Q89P83_BRAJA Blr3600 protein OS=Bradyrhizobium japonic...    34   7.5  
tr|Q82GM0|Q82GM0_STRAW Putative sensor-like histidine kinase OS=...    34   7.5  
tr|Q4Q2X5|Q4Q2X5_LEIMA Putative uncharacterized protein OS=Leish...    34   7.5  
tr|B6YTA6|B6YTA6_THEON Stetterlysin OS=Thermococcus onnurineus (...    34   7.6  
tr|B4D5R1|B4D5R1_9BACT Autotransporter-associated beta strand re...    33   9.9  
tr|A6CGM2|A6CGM2_9PLAN Outer membrane autotransporter barrel OS=...    33   9.9  
tr|B4PFX2|B4PFX2_DROYA GE19628 OS=Drosophila yakuba GN=GE19628 P...    33   9.9  

>tr|B8AXJ4|B8AXJ4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_18274 PE=4 SV=1
          Length = 745

 Score = 38.5 bits (88), Expect = 0.31
 Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 11/120 (9%)
 Frame = +1

Query: 196 DLAHAQDFNFPTGRNLTTGSL-----TSLKNGVVDSTGTLILDASTGEAQAFYESPVTLY 360
           D++ A  F++ T   LT GSL       LKNG +  +  L +  S G  +A Y +PV L 
Sbjct: 5   DVSTALRFDYAT---LTLGSLKLLGDAHLKNGTIRLSRDLPVPNS-GAGRALYATPVAL- 59

Query: 361 DTISGSVHXXXXXXXXXXNATNGNGTVAFVVVPDAATVG------GIAGARSTFTIEFNT 522
               G             NA +  G +AFV+  D  T+G      G++ A     +EF+T
Sbjct: 60  ---RGGFSTQFAFTVATLNADSVGGGLAFVLASDGVTLGDAGPYIGVSAASDVAAVEFDT 116


>tr|Q6L4L2|Q6L4L2_ORYSJ Os05g0125200 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0079L11.5 PE=4 SV=1
          Length = 771

 Score = 38.1 bits (87), Expect = 0.40
 Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 11/120 (9%)
 Frame = +1

Query: 196 DLAHAQDFNFPTGRNLTTGSL-----TSLKNGVVDSTGTLILDASTGEAQAFYESPVTLY 360
           D++ A  F++ T   LT GSL       LKNG +  +  L +  S G  +A Y +PV L 
Sbjct: 31  DVSTALCFDYAT---LTLGSLKLLGDAHLKNGTIRLSRDLPVPNS-GAGRALYATPVAL- 85

Query: 361 DTISGSVHXXXXXXXXXXNATNGNGTVAFVVVPDAATVG------GIAGARSTFTIEFNT 522
               G             NA +  G +AFV+  D  T+G      G++ A     +EF+T
Sbjct: 86  ---RGGFSTQFAFTVATLNADSVGGGLAFVLASDGVTLGDAGPYIGVSAASDVAAVEFDT 142


>tr|A3AZI1|A3AZI1_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_016203 PE=4 SV=1
          Length = 584

 Score = 38.1 bits (87), Expect = 0.40
 Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 11/120 (9%)
 Frame = +1

Query: 196 DLAHAQDFNFPTGRNLTTGSL-----TSLKNGVVDSTGTLILDASTGEAQAFYESPVTLY 360
           D++ A  F++ T   LT GSL       LKNG +  +  L +  S G  +A Y +PV L 
Sbjct: 27  DVSTALCFDYAT---LTLGSLKLLGDAHLKNGTIRLSRDLPVPNS-GAGRALYATPVAL- 81

Query: 361 DTISGSVHXXXXXXXXXXNATNGNGTVAFVVVPDAATVG------GIAGARSTFTIEFNT 522
               G             NA +  G +AFV+  D  T+G      G++ A     +EF+T
Sbjct: 82  ---RGGFSTQFAFTVATLNADSVGGGLAFVLASDGVTLGDAGPYIGVSAASDVAAVEFDT 138


>tr|B4MR63|B4MR63_DROWI GK22008 OS=Drosophila willistoni GN=GK22008
           PE=4 SV=1
          Length = 692

 Score = 37.0 bits (84), Expect = 0.88
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = -3

Query: 557 QSLLLYSPVPQDVLNSMVNVLLAPAMPPTVAASGTTTNATVPFPFVAFEEKVKNVEKECT 378
           +SLL  +PVP+   N    V+  P MPP V   G++  + V  P     E V N  +EC 
Sbjct: 363 RSLLRLAPVPEKP-NRKAQVIFNPLMPPPVPILGSSQYSNVESPLELQAEAVLNTAEECF 421

Query: 377 E 375
           E
Sbjct: 422 E 422


>tr|A3Z7P4|A3Z7P4_9SYNE Putative uncharacterized protein
             OS=Synechococcus sp. RS9917 GN=RS9917_01402 PE=4 SV=1
          Length = 28178

 Score = 37.0 bits (84), Expect = 0.89
 Identities = 40/140 (28%), Positives = 54/140 (38%), Gaps = 8/140 (5%)
 Frame = +1

Query: 202   AHAQDFNFPTGRNLTTGSLTSLKNGVVDSTGTLILDASTGEAQAFYESPVTLYDTISGSV 381
             A    FNF  G + +  +  SL   V  STG+L L + T    A  E       T+ GS+
Sbjct: 12934 ASGDGFNFVGGLSFSGNAPISLAAAVESSTGSLHLGSGTLTLAANSELAAATNLTVGGSL 12993

Query: 382   HXXXXXXXXXXNATNGNGTVAFVVVPDAATVGG-----IAGARSTFT--IEF-NTSCGTG 537
                         + N    +  V + D  T  G     + GA +TFT  I+F NT   T 
Sbjct: 12994 SGSSRTLTIAAGSANTASFLGTVTLADLITSAGSYGVSLTGASNTFTSAIDFANTGAVTL 13053

Query: 538   EYNNSDWFYGGHAYPGSGRG 597
                 +D F  G     SG G
Sbjct: 13054 GDATTDLFSFGDGLAISGNG 13073


>tr|B0XA36|B0XA36_CULQU Putative uncharacterized protein OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ016327 PE=4 SV=1
          Length = 402

 Score = 35.4 bits (80), Expect = 2.6
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = -3

Query: 512 SMVNVLLAPAMPPTVAASGTTTNATVPFPF 423
           SM N  L P  PPT  A+ TTT +T P PF
Sbjct: 99  SMKNYKLGPTAPPTTTAATTTTTSTTPQPF 128


>tr|B8B0G9|B8B0G9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_23816 PE=4 SV=1
          Length = 943

 Score = 35.0 bits (79), Expect = 3.4
 Identities = 23/59 (38%), Positives = 27/59 (45%)
 Frame = -3

Query: 602 PSPRPDPGYACPP*NQSLLLYSPVPQDVLNSMVNVLLAPAMPPTVAASGTTTNATVPFP 426
           P+P P P  A  P  QS ++ SPVP  +  S V      A PP  A    TT A  P P
Sbjct: 705 PAPTPAPASATAPLIQSNVVISPVPPTLAASGV-----AAWPPVPAIPELTTAAAAPLP 758


>tr|Q9AQG4|Q9AQG4_9FIRM CelE OS=Caldicellulosiruptor sp. Tok7B.1 PE=4
            SV=1
          Length = 1751

 Score = 34.3 bits (77), Expect = 5.8
 Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
 Frame = +1

Query: 238  NLTTGSLTSLKNGVV--DSTGTLILDASTGEAQAFY--ESPVTLYDTISGSVHXXXXXXX 405
            N   GS+T++ N  +  ++ GT  +D S  + + +Y  +   T   +++ S++       
Sbjct: 1044 NGNLGSMTNVLNPKIKIENVGTTAVDLSRVKVRYWYTIDGEATQSVSVTSSINPAYIDVK 1103

Query: 406  XXXNATNGNGTVAFVVVPDAATVGGIAGARSTFTIEFNTSCGTGEYNNSD 555
                  N  G   +V +   +  G +A  +ST  I  +   G+G YN S+
Sbjct: 1104 FVKLGANAGGADYYVEIGFKSGAGVLAAGQSTKEIRLSIQKGSGSYNQSN 1153


>tr|Q89P83|Q89P83_BRAJA Blr3600 protein OS=Bradyrhizobium japonicum
           GN=blr3600 PE=4 SV=1
          Length = 508

 Score = 33.9 bits (76), Expect = 7.5
 Identities = 23/61 (37%), Positives = 27/61 (44%)
 Frame = -3

Query: 602 PSPRPDPGYACPP*NQSLLLYSPVPQDVLNSMVNVLLAPAMPPTVAASGTTTNATVPFPF 423
           PSP P PG   PP +     +SPVPQ       N   APA+ PT     T     VP P 
Sbjct: 49  PSPVPSPGAPTPPSS-----FSPVPQG-----SNYASAPAIHPTEEWISTPAQGQVPQPM 98

Query: 422 V 420
           +
Sbjct: 99  L 99


>tr|Q82GM0|Q82GM0_STRAW Putative sensor-like histidine kinase
           OS=Streptomyces avermitilis GN=cvnA9 PE=4 SV=1
          Length = 746

 Score = 33.9 bits (76), Expect = 7.5
 Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
 Frame = -3

Query: 533 VPQDVLNSMVNV--LLAPAMPPTVAASGTTTNATVPFPFVAFEEKVKNVEKECTEPLIVS 360
           +PQD+L+++  V    APA P T AA+ TTT AT   P         + +   T+     
Sbjct: 439 IPQDILSTVPAVPPAPAPAQPVTAAAAATTTAATAVEPAATDPAVATSTDATSTD----- 493

Query: 359 YKVTGDS*NACASPVLASRMRVPVESTTPFFREVRDP 249
              T D+  A A P  A     P     P +   R P
Sbjct: 494 -ATTPDASPATAPPAAAPPAAAP-SRPLPSYAAARSP 528