DK960241
Clone id TST39A01NGRL0006_O03
Library
Length 698
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_O03. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GCAGTCATGCAGTCGAGAGTGGTAATACAGGGAATATTCGTTCGAGATGCTTTCTCGTTT
CTGACATTAGAGTGAACCTTTCCCTGAAGATAGCATCTATTGAAATCTGCACTCTCACTG
GCTTTTCTTACCGCAGAGATTGTATTCATCATATAAGTGCAGATCCTTGCAGCAGGCGTA
GAGAATATGTCACTTCTTCCCCATCTTCTCACCATACATTTTGTACTGCTGAACCCCAGA
ACCGCTCAAATCATGGAGACTCCGATTCGGGTTCCGACGGTGATTGCGAACCCGATCCTA
ATCCCGATTCCAAGCGGCCGCAGCAGGATTCCACAAGCATGCGGCATCAAATGGAAACCC
TCAAGGAAGCTGTCTCCCCTGTTCTGTCAAAAGCGCTTAGAGCCCGAAAGCTGGACGCTG
ATAGATGGAGAAGACGCACCCACCGTGGTTTCCACTCTACCAATGACTAAGAGATACGCG
CCTCGTCGGCTCCTCGAATTCATCGCAAAGAAGGTAGACTCCAAAATGTTTTCACCAGCA
CAACTGAAGAAGGCACTTATGTTCTGGCAAAAGAAGGAGAAGTTGGAAGAAGACACTCCA
TTTGCATCCTCCGCCTTTGGCGAGAAGGGGGTATCTCAGATCTATCAATGGACGGCTACT
GACCTCACCTTGCAGCATGTGCGACTGGACAGAATTGC
■■Homology search results ■■ -
sp_hit_id Q9KGU7
Definition sp|Q9KGU7|DXS_PSEAE 1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa
Align length 89
Score (bit) 34.3
E-value 0.66
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960241|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_O03, 5'
(698 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9KGU7|DXS_PSEAE 1-deoxy-D-xylulose-5-phosphate synthase OS=P... 34 0.66
sp|Q02SL1|DXS_PSEAB 1-deoxy-D-xylulose-5-phosphate synthase OS=P... 34 0.66
sp|A6V058|DXS_PSEA7 1-deoxy-D-xylulose-5-phosphate synthase OS=P... 34 0.66
sp|Q91WT4|DJC17_MOUSE DnaJ homolog subfamily C member 17 OS=Mus ... 34 0.86
sp|Q5T200|ZC3HD_HUMAN Zinc finger CCCH domain-containing protein... 33 1.5
sp|Q9V3D2|HEM6_DROME Coproporphyrinogen III oxidase OS=Drosophil... 33 1.9
sp|Q9NVM6|DJC17_HUMAN DnaJ homolog subfamily C member 17 OS=Homo... 32 2.5
sp|Q2KI83|DJC17_BOVIN DnaJ homolog subfamily C member 17 OS=Bos ... 32 3.3
sp|P17558|RTPT_YEAST 37S ribosomal protein PET123, mitochondrial... 31 5.6
sp|Q69154|IE63_MCMVS Transcriptional regulator IE63 homolog OS=M... 31 7.3
sp|P07666|SRYA_DROME Serendipity locus protein alpha OS=Drosophi... 30 9.5

>sp|Q9KGU7|DXS_PSEAE 1-deoxy-D-xylulose-5-phosphate synthase
OS=Pseudomonas aeruginosa GN=dxs PE=1 SV=1
Length = 627

Score = 34.3 bits (77), Expect = 0.66
Identities = 29/89 (32%), Positives = 39/89 (43%)
Frame = +1

Query: 421 IDGEDAPTVVSTLPMTKRYAPRRLLEFIAKKVDSKMFSPAQLKKALMFWQKKEKLEEDTP 600
IDG D PT+V+TL + + L + KK K F+PA+L + + KLE
Sbjct: 261 IDGHDLPTLVATLRNMRDMKGPQFLHVVTKK--GKGFAPAELDP--IGYHAITKLEAPGS 316

Query: 601 FASSAFGEKGVSQIYQWTATDLTLQHVRL 687
G K S QW D+ Q RL
Sbjct: 317 APKKTGGPKYSSVFGQWLC-DMAAQDARL 344


>sp|Q02SL1|DXS_PSEAB 1-deoxy-D-xylulose-5-phosphate synthase
OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dxs
PE=3 SV=1
Length = 627

Score = 34.3 bits (77), Expect = 0.66
Identities = 29/89 (32%), Positives = 39/89 (43%)
Frame = +1

Query: 421 IDGEDAPTVVSTLPMTKRYAPRRLLEFIAKKVDSKMFSPAQLKKALMFWQKKEKLEEDTP 600
IDG D PT+V+TL + + L + KK K F+PA+L + + KLE
Sbjct: 261 IDGHDLPTLVATLRNMRDMKGPQFLHVVTKK--GKGFAPAELDP--IGYHAITKLEAPGS 316

Query: 601 FASSAFGEKGVSQIYQWTATDLTLQHVRL 687
G K S QW D+ Q RL
Sbjct: 317 APKKTGGPKYSSVFGQWLC-DMAAQDARL 344


>sp|A6V058|DXS_PSEA7 1-deoxy-D-xylulose-5-phosphate synthase
OS=Pseudomonas aeruginosa (strain PA7) GN=dxs PE=3 SV=1
Length = 627

Score = 34.3 bits (77), Expect = 0.66
Identities = 29/89 (32%), Positives = 39/89 (43%)
Frame = +1

Query: 421 IDGEDAPTVVSTLPMTKRYAPRRLLEFIAKKVDSKMFSPAQLKKALMFWQKKEKLEEDTP 600
IDG D PT+V+TL + + L + KK K F+PA+L + + KLE
Sbjct: 261 IDGHDLPTLVATLRNMRDMKGPQFLHVVTKK--GKGFAPAELDP--IGYHAITKLEAPGS 316

Query: 601 FASSAFGEKGVSQIYQWTATDLTLQHVRL 687
G K S QW D+ Q RL
Sbjct: 317 APKKTGGPKYSSVFGQWLC-DMAAQDARL 344


>sp|Q91WT4|DJC17_MOUSE DnaJ homolog subfamily C member 17 OS=Mus
musculus GN=Dnajc17 PE=2 SV=1
Length = 303

Score = 33.9 bits (76), Expect = 0.86
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Frame = +3

Query: 285 CEPDPNPDSKRPQQDSTSMRHQMETLKEAVS-PVLSKALRARKLDADRWRRRTHRGFHST 461
C PD NPD+ R + + +E L +A + K +A+K A+R +R
Sbjct: 38 CHPDKNPDNPRAAELFHQLSQALEVLTDAAARAAYDKVRKAKKQAAERTQRLDENRKKVK 97

Query: 462 ND*EIRASSAPRIHRKEGRLQNVFTSTTEEGTYVLAKEG 578
D E R A + H E ++ +T E+ L +EG
Sbjct: 98 LDLEARERQA-QAHGSEEEEESRSATTLEQEIARLREEG 135


>sp|Q5T200|ZC3HD_HUMAN Zinc finger CCCH domain-containing protein 13
OS=Homo sapiens GN=ZC3H13 PE=1 SV=1
Length = 1668

Score = 33.1 bits (74), Expect = 1.5
Identities = 19/73 (26%), Positives = 40/73 (54%)
Frame = +3

Query: 306 DSKRPQQDSTSMRHQMETLKEAVSPVLSKALRARKLDADRWRRRTHRGFHSTND*EIRAS 485
+ ++P++ +S R++ + LKE VS V + + L++ R R + G H + D E +
Sbjct: 892 EDRKPERKESSRRYEEQELKEKVSSVDKQREQTEILESSRMRAQDIIGHHQSEDRE-TSD 950

Query: 486 SAPRIHRKEGRLQ 524
A ++K+ ++Q
Sbjct: 951 RAHDENKKKAKIQ 963


>sp|Q9V3D2|HEM6_DROME Coproporphyrinogen III oxidase OS=Drosophila
melanogaster GN=Coprox PE=1 SV=1
Length = 390

Score = 32.7 bits (73), Expect = 1.9
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +3

Query: 294 DPNPDSKRPQQDSTSMRHQMETLKEAVSPVLSKALRA-----RKLDADRWRR 434
+P DSK D +MRH+ME L + +AL A +K DRW R
Sbjct: 70 EPITDSKALLGDKENMRHRMEILIMEIQAEFCRALEAEENCGQKFKVDRWER 121


>sp|Q9NVM6|DJC17_HUMAN DnaJ homolog subfamily C member 17 OS=Homo
sapiens GN=DNAJC17 PE=1 SV=1
Length = 304

Score = 32.3 bits (72), Expect = 2.5
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Frame = +3

Query: 285 CEPDPNPDSKRPQQDSTSMRHQMETLKEAVS-PVLSKALRARKLDADRWRRRTHRGFHST 461
C PD NPD+ R + + +E L +A + K +A+K A+R ++ +
Sbjct: 38 CHPDKNPDNPRAAELFHQLSQALEVLTDAAARAAYDKVRKAKKQAAERTQKLDEKRKKVK 97

Query: 462 ND*EIRASSAPRIHRKEGRLQNVFTSTTEEGTYVLAKEG 578
D E R A + E ++ T T E+ L +EG
Sbjct: 98 LDLEARERQA-QAQESEEEEESRSTRTLEQEIERLREEG 135


>sp|Q2KI83|DJC17_BOVIN DnaJ homolog subfamily C member 17 OS=Bos
taurus GN=DNAJC17 PE=2 SV=1
Length = 304

Score = 32.0 bits (71), Expect = 3.3
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Frame = +3

Query: 285 CEPDPNPDSKRPQQDSTSMRHQMETLKEAVS-PVLSKALRARKLDADRWRRRTHRGFHST 461
C PD NPD+ R + + +E L +A + K +A+K A+R ++ R
Sbjct: 38 CHPDKNPDNPRAAELFHQLSQALEVLTDAAARAAYDKVRKAKKQAAERTQKLDERRKKVK 97

Query: 462 ND*EIRASSAPRIHRKEGRLQNVFTSTTEEGTYVLAKEG 578
D E R A + +E ++ T E+ L +EG
Sbjct: 98 LDLEARERQAQALGSEEEE-ESGSARTLEQEIERLREEG 135


>sp|P17558|RTPT_YEAST 37S ribosomal protein PET123, mitochondrial
OS=Saccharomyces cerevisiae GN=PET123 PE=1 SV=1
Length = 318

Score = 31.2 bits (69), Expect = 5.6
Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 10/128 (7%)
Frame = +1

Query: 235 PRTAQIMETPIRVPTVIANPILIPIPSGRSRIPQACGIKW-KPSRKLSP---------LF 384
P T I+++P T I N + P P G I A G+K K S +LSP L
Sbjct: 16 PTTRSILKSPTTKQTDIINKVKSPKPKGVLGIGYAKGVKHPKGSHRLSPKVNFIDVDNLI 75

Query: 385 CQKRLEPESWTLIDGEDAPTVVSTLPMTKRYAPRRLLEFIAKKVDSKMFSPAQLKKALMF 564
+ EP+S +G + + +++ L+E K+ + L+K
Sbjct: 76 AKTVAEPQSIKSSNGSAQKVRLQKAELRRKF----LIEAFRKEEARLLHKHEYLQKRTKE 131

Query: 565 WQKKEKLE 588
+K ++LE
Sbjct: 132 LEKAKELE 139


>sp|Q69154|IE63_MCMVS Transcriptional regulator IE63 homolog
OS=Murine cytomegalovirus (strain Smith) GN=UL69 PE=3
SV=1
Length = 841

Score = 30.8 bits (68), Expect = 7.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2

Query: 530 FHQHN*RRHLCSGKRRRSWKKTLHLHPPPLA 622
++ HN + SG +WK+ HL PPPL+
Sbjct: 41 YYGHNQSSYRDSGASHPNWKRNAHLMPPPLS 71


tr_hit_id A9RGR7
Definition tr|A9RGR7|A9RGR7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 43
Score (bit) 37.0
E-value 1.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960241|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_O03, 5'
(698 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9RGR7|A9RGR7_PHYPA Predicted protein OS=Physcomitrella paten... 37 1.2
tr|A9SZF0|A9SZF0_PHYPA Predicted protein OS=Physcomitrella paten... 37 1.6
tr|Q6WCT0|Q6WCT0_9MONO G protein OS=Human metapneumovirus PE=4 SV=1 35 3.5
tr|B0DL22|B0DL22_LACBS Predicted protein OS=Laccaria bicolor (st... 35 3.5
tr|B3DZS6|B3DZS6_METI4 Phytoene/squalene synthetase fused to fla... 35 4.6
tr|B0X5Z5|B0X5Z5_CULQU Zinc finger protein OS=Culex quinquefasci... 35 4.6
tr|Q6WCT4|Q6WCT4_9MONO G protein OS=Human metapneumovirus PE=4 SV=1 35 6.0
tr|A9TN70|A9TN70_PHYPA Predicted protein OS=Physcomitrella paten... 35 6.0
tr|B7V7R4|B7V7R4_PSEAE 1-deoxyxylulose-5-phosphate synthase OS=P... 34 7.9
tr|A3LFD7|A3LFD7_PSEAE 1-deoxyxylulose-5-phosphate synthase OS=P... 34 7.9
tr|A3KYU4|A3KYU4_PSEAE 1-deoxyxylulose-5-phosphate synthase OS=P... 34 7.9

>tr|A9RGR7|A9RGR7_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_158993 PE=4 SV=1
Length = 453

Score = 37.0 bits (84), Expect = 1.2
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = +1

Query: 571 KKEKLEEDTPFASSAFGEK-GVSQIYQWTATDLTLQHVRLDRI 696
K +K E F +S++ K G + ++QWTAT+LT+QH +L RI
Sbjct: 228 KNKKQPELLAFEASSYESKDGKTALHQWTATELTMQHNQLVRI 270


>tr|A9SZF0|A9SZF0_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_167268 PE=4 SV=1
Length = 508

Score = 36.6 bits (83), Expect = 1.6
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = +1

Query: 622 EKGVSQIYQWTATDLTLQHVRLDRI 696
+ GV ++QW+AT+LT+QHV+L RI
Sbjct: 349 QDGVEAVHQWSATELTMQHVQLARI 373


>tr|Q6WCT0|Q6WCT0_9MONO G protein OS=Human metapneumovirus PE=4 SV=1
Length = 219

Score = 35.4 bits (80), Expect = 3.5
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 5/124 (4%)
Frame = +3

Query: 192 TSSPSSHHTFCTAEPQNRSNHXXXXXXXXXXCEPDPNPDSKRPQQDSTSMRHQMETLKEA 371
T+S S HHT + P SN PD NP+S+ P Q ST E+L +
Sbjct: 58 TTSESEHHT---SSPPTESNKETSTISID---NPDINPNSQHPTQQST------ESLTLS 105

Query: 372 VSPVLSKALRARKLDADRWRRRTHRGFHSTND*EIRASSAPRIHRKE-----GRLQNVFT 536
+ +S + +D R + +T E RA + P +H+K R Q+
Sbjct: 106 PTASVSPSETEPASTSDTTSRLSSVDRSTTQPSESRARTKPTVHKKNIPSTVSRTQSPLR 165

Query: 537 STTE 548
+TT+
Sbjct: 166 ATTK 169


>tr|B0DL22|B0DL22_LACBS Predicted protein OS=Laccaria bicolor (strain
S238N-H82) GN=LACBIDRAFT_304147 PE=4 SV=1
Length = 1412

Score = 35.4 bits (80), Expect = 3.5
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Frame = +1

Query: 259 TPIRVPTVIANPILIPIPSGRSRIPQACGIKWKPSRKLSPLFCQKRLEPESWTLIDGEDA 438
TP VP ++P L PIPS P++ G K K +RK S + +SW D+
Sbjct: 1151 TPTEVPLSTSDPQLSPIPSANRATPESPGPKRKRTRKDSVIHSPSPAVSKSW-----NDS 1205

Query: 439 PTVVSTLPMTKRYAP---RRLLEFIAKKVDSKMFSPAQLKKALMF 564
++ P ++ RRL +++ DS ++ Q K+A++F
Sbjct: 1206 ASLHPPRPFAVSFSSAGHRRLA--LSRLADSNLY--LQEKEAVVF 1246


>tr|B3DZS6|B3DZS6_METI4 Phytoene/squalene synthetase fused to flavin
containing amine oxidoreductase OS=Methylacidiphilum
infernorum (isolate V4) GN=erg9 PE=4 SV=1
Length = 769

Score = 35.0 bits (79), Expect = 4.6
Identities = 26/75 (34%), Positives = 37/75 (49%)
Frame = +1

Query: 463 MTKRYAPRRLLEFIAKKVDSKMFSPAQLKKALMFWQKKEKLEEDTPFASSAFGEKGVSQI 642
MT YA R+++ I VDS M SP + K+ + FW KKE T SS G++ +
Sbjct: 47 MTVFYAFCRVIDDI---VDSTMLSPQEKKEGIFFW-KKEIERIYTSMPSSPLGKELREVV 102

Query: 643 YQWTATDLTLQHVRL 687
+W LQ + L
Sbjct: 103 IKWNLPQDILQEIIL 117


>tr|B0X5Z5|B0X5Z5_CULQU Zinc finger protein OS=Culex
quinquefasciatus GN=CpipJ_CPIJ014715 PE=4 SV=1
Length = 658

Score = 35.0 bits (79), Expect = 4.6
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = +3

Query: 345 HQMETLKEAVSPVLSKALRARKLDADRWRRRTHRGFH-----STND*EIRASSAPRIHRK 509
HQ +T KEA AR +D DRWRRR+H H +++ I A R+H +
Sbjct: 278 HQRKT-KEASKVYACTKCTARFVDQDRWRRRSHAHNHPRDKEASSSKVIVAQIPERVHEE 336

Query: 510 EGRL 521
GR+
Sbjct: 337 YGRI 340


>tr|Q6WCT4|Q6WCT4_9MONO G protein OS=Human metapneumovirus PE=4 SV=1
Length = 228

Score = 34.7 bits (78), Expect = 6.0
Identities = 36/124 (29%), Positives = 48/124 (38%), Gaps = 5/124 (4%)
Frame = +3

Query: 192 TSSPSSHHTFCTAEPQNRSNHXXXXXXXXXXCEPDPNPDSKRPQQDSTSMRHQMETLKEA 371
T+S S HHT + P SN PD NP+S+ P Q ST + TL A
Sbjct: 58 TTSESEHHT---SSPPTESNKETSTIPID---NPDINPNSQHPTQQST----ESPTLNPA 107

Query: 372 VSPVLSKALRARKLDADRWRRRTHRGFHSTND*EIRASSAPRIHRKE-----GRLQNVFT 536
S S+ A D R +T E R + P +H K R Q+
Sbjct: 108 ASVSPSETEPASTPDTTNRLSSVDRS--TTQPSESRTKTKPTVHTKNNPSTVSRTQSPLR 165

Query: 537 STTE 548
+TT+
Sbjct: 166 ATTK 169


>tr|A9TN70|A9TN70_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_170991 PE=4 SV=1
Length = 380

Score = 34.7 bits (78), Expect = 6.0
Identities = 17/33 (51%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Frame = +1

Query: 601 FASSAFGEK-GVSQIYQWTATDLTLQHVRLDRI 696
F+ SAF EK GVS + ++T T+LT++H +L RI
Sbjct: 213 FSDSAFDEKDGVSPLDEFTTTELTMEHAQLARI 245


>tr|B7V7R4|B7V7R4_PSEAE 1-deoxyxylulose-5-phosphate synthase
OS=Pseudomonas aeruginosa LESB58 GN=dxs PE=4 SV=1
Length = 627

Score = 34.3 bits (77), Expect = 7.9
Identities = 29/89 (32%), Positives = 39/89 (43%)
Frame = +1

Query: 421 IDGEDAPTVVSTLPMTKRYAPRRLLEFIAKKVDSKMFSPAQLKKALMFWQKKEKLEEDTP 600
IDG D PT+V+TL + + L + KK K F+PA+L + + KLE
Sbjct: 261 IDGHDLPTLVATLRNMRDMKGPQFLHVVTKK--GKGFAPAELDP--IGYHAITKLEAPGS 316

Query: 601 FASSAFGEKGVSQIYQWTATDLTLQHVRL 687
G K S QW D+ Q RL
Sbjct: 317 APKKTGGPKYSSVFGQWLC-DMAAQDARL 344


>tr|A3LFD7|A3LFD7_PSEAE 1-deoxyxylulose-5-phosphate synthase
OS=Pseudomonas aeruginosa 2192 GN=PA2G_03491 PE=4 SV=1
Length = 627

Score = 34.3 bits (77), Expect = 7.9
Identities = 29/89 (32%), Positives = 39/89 (43%)
Frame = +1

Query: 421 IDGEDAPTVVSTLPMTKRYAPRRLLEFIAKKVDSKMFSPAQLKKALMFWQKKEKLEEDTP 600
IDG D PT+V+TL + + L + KK K F+PA+L + + KLE
Sbjct: 261 IDGHDLPTLVATLRNMRDMKGPQFLHVVTKK--GKGFAPAELDP--IGYHAITKLEAPGS 316

Query: 601 FASSAFGEKGVSQIYQWTATDLTLQHVRL 687
G K S QW D+ Q RL
Sbjct: 317 APKKTGGPKYSSVFGQWLC-DMAAQDARL 344