DK960241 |
Clone id |
TST39A01NGRL0006_O03 |
Library |
TST39 |
Length |
698 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_O03. 5' end sequence. |
Accession |
DK960241 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL3219Contig1 |
Sequence |
GCAGTCATGCAGTCGAGAGTGGTAATACAGGGAATATTCGTTCGAGATGCTTTCTCGTTT CTGACATTAGAGTGAACCTTTCCCTGAAGATAGCATCTATTGAAATCTGCACTCTCACTG GCTTTTCTTACCGCAGAGATTGTATTCATCATATAAGTGCAGATCCTTGCAGCAGGCGTA GAGAATATGTCACTTCTTCCCCATCTTCTCACCATACATTTTGTACTGCTGAACCCCAGA ACCGCTCAAATCATGGAGACTCCGATTCGGGTTCCGACGGTGATTGCGAACCCGATCCTA ATCCCGATTCCAAGCGGCCGCAGCAGGATTCCACAAGCATGCGGCATCAAATGGAAACCC TCAAGGAAGCTGTCTCCCCTGTTCTGTCAAAAGCGCTTAGAGCCCGAAAGCTGGACGCTG ATAGATGGAGAAGACGCACCCACCGTGGTTTCCACTCTACCAATGACTAAGAGATACGCG CCTCGTCGGCTCCTCGAATTCATCGCAAAGAAGGTAGACTCCAAAATGTTTTCACCAGCA CAACTGAAGAAGGCACTTATGTTCTGGCAAAAGAAGGAGAAGTTGGAAGAAGACACTCCA TTTGCATCCTCCGCCTTTGGCGAGAAGGGGGTATCTCAGATCTATCAATGGACGGCTACT GACCTCACCTTGCAGCATGTGCGACTGGACAGAATTGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9KGU7 |
Definition |
sp|Q9KGU7|DXS_PSEAE 1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa |
Align length |
89 |
Score (bit) |
34.3 |
E-value |
0.66 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960241|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0006_O03, 5' (698 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9KGU7|DXS_PSEAE 1-deoxy-D-xylulose-5-phosphate synthase OS=P... 34 0.66 sp|Q02SL1|DXS_PSEAB 1-deoxy-D-xylulose-5-phosphate synthase OS=P... 34 0.66 sp|A6V058|DXS_PSEA7 1-deoxy-D-xylulose-5-phosphate synthase OS=P... 34 0.66 sp|Q91WT4|DJC17_MOUSE DnaJ homolog subfamily C member 17 OS=Mus ... 34 0.86 sp|Q5T200|ZC3HD_HUMAN Zinc finger CCCH domain-containing protein... 33 1.5 sp|Q9V3D2|HEM6_DROME Coproporphyrinogen III oxidase OS=Drosophil... 33 1.9 sp|Q9NVM6|DJC17_HUMAN DnaJ homolog subfamily C member 17 OS=Homo... 32 2.5 sp|Q2KI83|DJC17_BOVIN DnaJ homolog subfamily C member 17 OS=Bos ... 32 3.3 sp|P17558|RTPT_YEAST 37S ribosomal protein PET123, mitochondrial... 31 5.6 sp|Q69154|IE63_MCMVS Transcriptional regulator IE63 homolog OS=M... 31 7.3 sp|P07666|SRYA_DROME Serendipity locus protein alpha OS=Drosophi... 30 9.5
>sp|Q9KGU7|DXS_PSEAE 1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa GN=dxs PE=1 SV=1 Length = 627
Score = 34.3 bits (77), Expect = 0.66 Identities = 29/89 (32%), Positives = 39/89 (43%) Frame = +1
Query: 421 IDGEDAPTVVSTLPMTKRYAPRRLLEFIAKKVDSKMFSPAQLKKALMFWQKKEKLEEDTP 600 IDG D PT+V+TL + + L + KK K F+PA+L + + KLE Sbjct: 261 IDGHDLPTLVATLRNMRDMKGPQFLHVVTKK--GKGFAPAELDP--IGYHAITKLEAPGS 316
Query: 601 FASSAFGEKGVSQIYQWTATDLTLQHVRL 687 G K S QW D+ Q RL Sbjct: 317 APKKTGGPKYSSVFGQWLC-DMAAQDARL 344
>sp|Q02SL1|DXS_PSEAB 1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dxs PE=3 SV=1 Length = 627
Score = 34.3 bits (77), Expect = 0.66 Identities = 29/89 (32%), Positives = 39/89 (43%) Frame = +1
Query: 421 IDGEDAPTVVSTLPMTKRYAPRRLLEFIAKKVDSKMFSPAQLKKALMFWQKKEKLEEDTP 600 IDG D PT+V+TL + + L + KK K F+PA+L + + KLE Sbjct: 261 IDGHDLPTLVATLRNMRDMKGPQFLHVVTKK--GKGFAPAELDP--IGYHAITKLEAPGS 316
Query: 601 FASSAFGEKGVSQIYQWTATDLTLQHVRL 687 G K S QW D+ Q RL Sbjct: 317 APKKTGGPKYSSVFGQWLC-DMAAQDARL 344
>sp|A6V058|DXS_PSEA7 1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa (strain PA7) GN=dxs PE=3 SV=1 Length = 627
Score = 34.3 bits (77), Expect = 0.66 Identities = 29/89 (32%), Positives = 39/89 (43%) Frame = +1
Query: 421 IDGEDAPTVVSTLPMTKRYAPRRLLEFIAKKVDSKMFSPAQLKKALMFWQKKEKLEEDTP 600 IDG D PT+V+TL + + L + KK K F+PA+L + + KLE Sbjct: 261 IDGHDLPTLVATLRNMRDMKGPQFLHVVTKK--GKGFAPAELDP--IGYHAITKLEAPGS 316
Query: 601 FASSAFGEKGVSQIYQWTATDLTLQHVRL 687 G K S QW D+ Q RL Sbjct: 317 APKKTGGPKYSSVFGQWLC-DMAAQDARL 344
>sp|Q91WT4|DJC17_MOUSE DnaJ homolog subfamily C member 17 OS=Mus musculus GN=Dnajc17 PE=2 SV=1 Length = 303
Score = 33.9 bits (76), Expect = 0.86 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 1/99 (1%) Frame = +3
Query: 285 CEPDPNPDSKRPQQDSTSMRHQMETLKEAVS-PVLSKALRARKLDADRWRRRTHRGFHST 461 C PD NPD+ R + + +E L +A + K +A+K A+R +R Sbjct: 38 CHPDKNPDNPRAAELFHQLSQALEVLTDAAARAAYDKVRKAKKQAAERTQRLDENRKKVK 97
Query: 462 ND*EIRASSAPRIHRKEGRLQNVFTSTTEEGTYVLAKEG 578 D E R A + H E ++ +T E+ L +EG Sbjct: 98 LDLEARERQA-QAHGSEEEEESRSATTLEQEIARLREEG 135
>sp|Q5T200|ZC3HD_HUMAN Zinc finger CCCH domain-containing protein 13 OS=Homo sapiens GN=ZC3H13 PE=1 SV=1 Length = 1668
Score = 33.1 bits (74), Expect = 1.5 Identities = 19/73 (26%), Positives = 40/73 (54%) Frame = +3
Query: 306 DSKRPQQDSTSMRHQMETLKEAVSPVLSKALRARKLDADRWRRRTHRGFHSTND*EIRAS 485 + ++P++ +S R++ + LKE VS V + + L++ R R + G H + D E + Sbjct: 892 EDRKPERKESSRRYEEQELKEKVSSVDKQREQTEILESSRMRAQDIIGHHQSEDRE-TSD 950
Query: 486 SAPRIHRKEGRLQ 524 A ++K+ ++Q Sbjct: 951 RAHDENKKKAKIQ 963
>sp|Q9V3D2|HEM6_DROME Coproporphyrinogen III oxidase OS=Drosophila melanogaster GN=Coprox PE=1 SV=1 Length = 390
Score = 32.7 bits (73), Expect = 1.9 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 5/52 (9%) Frame = +3
Query: 294 DPNPDSKRPQQDSTSMRHQMETLKEAVSPVLSKALRA-----RKLDADRWRR 434 +P DSK D +MRH+ME L + +AL A +K DRW R Sbjct: 70 EPITDSKALLGDKENMRHRMEILIMEIQAEFCRALEAEENCGQKFKVDRWER 121
>sp|Q9NVM6|DJC17_HUMAN DnaJ homolog subfamily C member 17 OS=Homo sapiens GN=DNAJC17 PE=1 SV=1 Length = 304
Score = 32.3 bits (72), Expect = 2.5 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 1/99 (1%) Frame = +3
Query: 285 CEPDPNPDSKRPQQDSTSMRHQMETLKEAVS-PVLSKALRARKLDADRWRRRTHRGFHST 461 C PD NPD+ R + + +E L +A + K +A+K A+R ++ + Sbjct: 38 CHPDKNPDNPRAAELFHQLSQALEVLTDAAARAAYDKVRKAKKQAAERTQKLDEKRKKVK 97
Query: 462 ND*EIRASSAPRIHRKEGRLQNVFTSTTEEGTYVLAKEG 578 D E R A + E ++ T T E+ L +EG Sbjct: 98 LDLEARERQA-QAQESEEEEESRSTRTLEQEIERLREEG 135
>sp|Q2KI83|DJC17_BOVIN DnaJ homolog subfamily C member 17 OS=Bos taurus GN=DNAJC17 PE=2 SV=1 Length = 304
Score = 32.0 bits (71), Expect = 3.3 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 1/99 (1%) Frame = +3
Query: 285 CEPDPNPDSKRPQQDSTSMRHQMETLKEAVS-PVLSKALRARKLDADRWRRRTHRGFHST 461 C PD NPD+ R + + +E L +A + K +A+K A+R ++ R Sbjct: 38 CHPDKNPDNPRAAELFHQLSQALEVLTDAAARAAYDKVRKAKKQAAERTQKLDERRKKVK 97
Query: 462 ND*EIRASSAPRIHRKEGRLQNVFTSTTEEGTYVLAKEG 578 D E R A + +E ++ T E+ L +EG Sbjct: 98 LDLEARERQAQALGSEEEE-ESGSARTLEQEIERLREEG 135
>sp|P17558|RTPT_YEAST 37S ribosomal protein PET123, mitochondrial OS=Saccharomyces cerevisiae GN=PET123 PE=1 SV=1 Length = 318
Score = 31.2 bits (69), Expect = 5.6 Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 10/128 (7%) Frame = +1
Query: 235 PRTAQIMETPIRVPTVIANPILIPIPSGRSRIPQACGIKW-KPSRKLSP---------LF 384 P T I+++P T I N + P P G I A G+K K S +LSP L Sbjct: 16 PTTRSILKSPTTKQTDIINKVKSPKPKGVLGIGYAKGVKHPKGSHRLSPKVNFIDVDNLI 75
Query: 385 CQKRLEPESWTLIDGEDAPTVVSTLPMTKRYAPRRLLEFIAKKVDSKMFSPAQLKKALMF 564 + EP+S +G + + +++ L+E K+ + L+K Sbjct: 76 AKTVAEPQSIKSSNGSAQKVRLQKAELRRKF----LIEAFRKEEARLLHKHEYLQKRTKE 131
Query: 565 WQKKEKLE 588 +K ++LE Sbjct: 132 LEKAKELE 139
>sp|Q69154|IE63_MCMVS Transcriptional regulator IE63 homolog OS=Murine cytomegalovirus (strain Smith) GN=UL69 PE=3 SV=1 Length = 841
Score = 30.8 bits (68), Expect = 7.3 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +2
Query: 530 FHQHN*RRHLCSGKRRRSWKKTLHLHPPPLA 622 ++ HN + SG +WK+ HL PPPL+ Sbjct: 41 YYGHNQSSYRDSGASHPNWKRNAHLMPPPLS 71
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RGR7 |
Definition |
tr|A9RGR7|A9RGR7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
43 |
Score (bit) |
37.0 |
E-value |
1.2 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960241|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0006_O03, 5' (698 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RGR7|A9RGR7_PHYPA Predicted protein OS=Physcomitrella paten... 37 1.2 tr|A9SZF0|A9SZF0_PHYPA Predicted protein OS=Physcomitrella paten... 37 1.6 tr|Q6WCT0|Q6WCT0_9MONO G protein OS=Human metapneumovirus PE=4 SV=1 35 3.5 tr|B0DL22|B0DL22_LACBS Predicted protein OS=Laccaria bicolor (st... 35 3.5 tr|B3DZS6|B3DZS6_METI4 Phytoene/squalene synthetase fused to fla... 35 4.6 tr|B0X5Z5|B0X5Z5_CULQU Zinc finger protein OS=Culex quinquefasci... 35 4.6 tr|Q6WCT4|Q6WCT4_9MONO G protein OS=Human metapneumovirus PE=4 SV=1 35 6.0 tr|A9TN70|A9TN70_PHYPA Predicted protein OS=Physcomitrella paten... 35 6.0 tr|B7V7R4|B7V7R4_PSEAE 1-deoxyxylulose-5-phosphate synthase OS=P... 34 7.9 tr|A3LFD7|A3LFD7_PSEAE 1-deoxyxylulose-5-phosphate synthase OS=P... 34 7.9 tr|A3KYU4|A3KYU4_PSEAE 1-deoxyxylulose-5-phosphate synthase OS=P... 34 7.9
>tr|A9RGR7|A9RGR7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_158993 PE=4 SV=1 Length = 453
Score = 37.0 bits (84), Expect = 1.2 Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Frame = +1
Query: 571 KKEKLEEDTPFASSAFGEK-GVSQIYQWTATDLTLQHVRLDRI 696 K +K E F +S++ K G + ++QWTAT+LT+QH +L RI Sbjct: 228 KNKKQPELLAFEASSYESKDGKTALHQWTATELTMQHNQLVRI 270
>tr|A9SZF0|A9SZF0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_167268 PE=4 SV=1 Length = 508
Score = 36.6 bits (83), Expect = 1.6 Identities = 14/25 (56%), Positives = 21/25 (84%) Frame = +1
Query: 622 EKGVSQIYQWTATDLTLQHVRLDRI 696 + GV ++QW+AT+LT+QHV+L RI Sbjct: 349 QDGVEAVHQWSATELTMQHVQLARI 373
>tr|Q6WCT0|Q6WCT0_9MONO G protein OS=Human metapneumovirus PE=4 SV=1 Length = 219
Score = 35.4 bits (80), Expect = 3.5 Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 5/124 (4%) Frame = +3
Query: 192 TSSPSSHHTFCTAEPQNRSNHXXXXXXXXXXCEPDPNPDSKRPQQDSTSMRHQMETLKEA 371 T+S S HHT + P SN PD NP+S+ P Q ST E+L + Sbjct: 58 TTSESEHHT---SSPPTESNKETSTISID---NPDINPNSQHPTQQST------ESLTLS 105
Query: 372 VSPVLSKALRARKLDADRWRRRTHRGFHSTND*EIRASSAPRIHRKE-----GRLQNVFT 536 + +S + +D R + +T E RA + P +H+K R Q+ Sbjct: 106 PTASVSPSETEPASTSDTTSRLSSVDRSTTQPSESRARTKPTVHKKNIPSTVSRTQSPLR 165
Query: 537 STTE 548 +TT+ Sbjct: 166 ATTK 169
>tr|B0DL22|B0DL22_LACBS Predicted protein OS=Laccaria bicolor (strain S238N-H82) GN=LACBIDRAFT_304147 PE=4 SV=1 Length = 1412
Score = 35.4 bits (80), Expect = 3.5 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 3/105 (2%) Frame = +1
Query: 259 TPIRVPTVIANPILIPIPSGRSRIPQACGIKWKPSRKLSPLFCQKRLEPESWTLIDGEDA 438 TP VP ++P L PIPS P++ G K K +RK S + +SW D+ Sbjct: 1151 TPTEVPLSTSDPQLSPIPSANRATPESPGPKRKRTRKDSVIHSPSPAVSKSW-----NDS 1205
Query: 439 PTVVSTLPMTKRYAP---RRLLEFIAKKVDSKMFSPAQLKKALMF 564 ++ P ++ RRL +++ DS ++ Q K+A++F Sbjct: 1206 ASLHPPRPFAVSFSSAGHRRLA--LSRLADSNLY--LQEKEAVVF 1246
>tr|B3DZS6|B3DZS6_METI4 Phytoene/squalene synthetase fused to flavin containing amine oxidoreductase OS=Methylacidiphilum infernorum (isolate V4) GN=erg9 PE=4 SV=1 Length = 769
Score = 35.0 bits (79), Expect = 4.6 Identities = 26/75 (34%), Positives = 37/75 (49%) Frame = +1
Query: 463 MTKRYAPRRLLEFIAKKVDSKMFSPAQLKKALMFWQKKEKLEEDTPFASSAFGEKGVSQI 642 MT YA R+++ I VDS M SP + K+ + FW KKE T SS G++ + Sbjct: 47 MTVFYAFCRVIDDI---VDSTMLSPQEKKEGIFFW-KKEIERIYTSMPSSPLGKELREVV 102
Query: 643 YQWTATDLTLQHVRL 687 +W LQ + L Sbjct: 103 IKWNLPQDILQEIIL 117
>tr|B0X5Z5|B0X5Z5_CULQU Zinc finger protein OS=Culex quinquefasciatus GN=CpipJ_CPIJ014715 PE=4 SV=1 Length = 658
Score = 35.0 bits (79), Expect = 4.6 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 5/64 (7%) Frame = +3
Query: 345 HQMETLKEAVSPVLSKALRARKLDADRWRRRTHRGFH-----STND*EIRASSAPRIHRK 509 HQ +T KEA AR +D DRWRRR+H H +++ I A R+H + Sbjct: 278 HQRKT-KEASKVYACTKCTARFVDQDRWRRRSHAHNHPRDKEASSSKVIVAQIPERVHEE 336
Query: 510 EGRL 521 GR+ Sbjct: 337 YGRI 340
>tr|Q6WCT4|Q6WCT4_9MONO G protein OS=Human metapneumovirus PE=4 SV=1 Length = 228
Score = 34.7 bits (78), Expect = 6.0 Identities = 36/124 (29%), Positives = 48/124 (38%), Gaps = 5/124 (4%) Frame = +3
Query: 192 TSSPSSHHTFCTAEPQNRSNHXXXXXXXXXXCEPDPNPDSKRPQQDSTSMRHQMETLKEA 371 T+S S HHT + P SN PD NP+S+ P Q ST + TL A Sbjct: 58 TTSESEHHT---SSPPTESNKETSTIPID---NPDINPNSQHPTQQST----ESPTLNPA 107
Query: 372 VSPVLSKALRARKLDADRWRRRTHRGFHSTND*EIRASSAPRIHRKE-----GRLQNVFT 536 S S+ A D R +T E R + P +H K R Q+ Sbjct: 108 ASVSPSETEPASTPDTTNRLSSVDRS--TTQPSESRTKTKPTVHTKNNPSTVSRTQSPLR 165
Query: 537 STTE 548 +TT+ Sbjct: 166 ATTK 169
>tr|A9TN70|A9TN70_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_170991 PE=4 SV=1 Length = 380
Score = 34.7 bits (78), Expect = 6.0 Identities = 17/33 (51%), Positives = 25/33 (75%), Gaps = 1/33 (3%) Frame = +1
Query: 601 FASSAFGEK-GVSQIYQWTATDLTLQHVRLDRI 696 F+ SAF EK GVS + ++T T+LT++H +L RI Sbjct: 213 FSDSAFDEKDGVSPLDEFTTTELTMEHAQLARI 245
>tr|B7V7R4|B7V7R4_PSEAE 1-deoxyxylulose-5-phosphate synthase OS=Pseudomonas aeruginosa LESB58 GN=dxs PE=4 SV=1 Length = 627
Score = 34.3 bits (77), Expect = 7.9 Identities = 29/89 (32%), Positives = 39/89 (43%) Frame = +1
Query: 421 IDGEDAPTVVSTLPMTKRYAPRRLLEFIAKKVDSKMFSPAQLKKALMFWQKKEKLEEDTP 600 IDG D PT+V+TL + + L + KK K F+PA+L + + KLE Sbjct: 261 IDGHDLPTLVATLRNMRDMKGPQFLHVVTKK--GKGFAPAELDP--IGYHAITKLEAPGS 316
Query: 601 FASSAFGEKGVSQIYQWTATDLTLQHVRL 687 G K S QW D+ Q RL Sbjct: 317 APKKTGGPKYSSVFGQWLC-DMAAQDARL 344
>tr|A3LFD7|A3LFD7_PSEAE 1-deoxyxylulose-5-phosphate synthase OS=Pseudomonas aeruginosa 2192 GN=PA2G_03491 PE=4 SV=1 Length = 627
Score = 34.3 bits (77), Expect = 7.9 Identities = 29/89 (32%), Positives = 39/89 (43%) Frame = +1
Query: 421 IDGEDAPTVVSTLPMTKRYAPRRLLEFIAKKVDSKMFSPAQLKKALMFWQKKEKLEEDTP 600 IDG D PT+V+TL + + L + KK K F+PA+L + + KLE Sbjct: 261 IDGHDLPTLVATLRNMRDMKGPQFLHVVTKK--GKGFAPAELDP--IGYHAITKLEAPGS 316
Query: 601 FASSAFGEKGVSQIYQWTATDLTLQHVRL 687 G K S QW D+ Q RL Sbjct: 317 APKKTGGPKYSSVFGQWLC-DMAAQDARL 344
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