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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960242
Clone id TST39A01NGRL0006_O04
Library
Length 585
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_O04. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CCCGTTCTAGGAAACTTGTGGAGCGATCTGCTGCGAAGCGATGGCGTACGTCGAAGGAGG
TAACATCAAATCCAGGCGTTCTCTGCTGAGATTGAGTATCTTTTCCGATCTGTTCCGGGG
CATCTTAAACTTCATCACAGTGTTCTTCGCCACCATGTTCTCTCTTGATGCAGCAAATGG
TTACGGGAAAAAACGCTCAGACAATAGACCATCCAGAGGATGGGGTGGTGGGCCAGGTGG
TGGTGGGCCTCCTGGAGGTCCTGGCTTTGGGCCTCGCCCAAATCAAGGTCCAAAGGGCAT
GTCAAATGTGCGAGGCATTGATCATAATTCTCTTCCTGCATGTGGATCTTGCTGTGGTGG
CTAATTGACTATGGTGCACTTGTGATATCATACCTGTAGCCCCACATGTTTTCACCAAGT
TGGAATATTCTCTAATGTAAAATGCAGTGGGTGCACTATGGATGGTTGTACATTTCTTTT
ATTTTGAAGTGTATATTTACTATCGCTCCTCGTCTTACATAGCTTTAAAAGAGTGCTGCT
GCTTTTTTGAGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q54WB8
Definition sp|Q54WB8|Y6021_DICDI Putative uncharacterized protein DDB_G0279765 OS=Dictyostelium discoideum
Align length 16
Score (bit) 30.8
E-value 4.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960242|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_O04, 5'
         (553 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54WB8|Y6021_DICDI Putative uncharacterized protein DDB_G0279...    31   4.6  
sp|Q6Q760|NALCN_RAT Sodium leak channel non-selective protein OS...    30   7.8  
sp|Q8BXR5|NALCN_MOUSE Sodium leak channel non-selective protein ...    30   7.8  
sp|Q8IZF0|NALCN_HUMAN Sodium leak channel non-selective protein ...    30   7.8  

>sp|Q54WB8|Y6021_DICDI Putative uncharacterized protein DDB_G0279765
           OS=Dictyostelium discoideum GN=DDB_G0279765 PE=4 SV=1
          Length = 815

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 187 PVTICCIKREHGGEEH 140
           P+ ICC+ REH  EEH
Sbjct: 754 PLQICCVSREHNNEEH 769


>sp|Q6Q760|NALCN_RAT Sodium leak channel non-selective protein
            OS=Rattus norvegicus GN=Nalcn PE=2 SV=1
          Length = 1738

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +3

Query: 378  TCDIIPVAPHVF---TKLEYSLM*NAVGALWMVVHFFYFEVYIYYRSSSYIALK 530
            T  II ++P  F    +  Y L+  ++G +W+V+HF     Y Y   +  I  +
Sbjct: 1257 TMKIIAMSPAGFWQSRRNRYDLLVTSLGVVWVVLHFALLNAYTYMMGACVIVFR 1310


>sp|Q8BXR5|NALCN_MOUSE Sodium leak channel non-selective protein
            OS=Mus musculus GN=Nalcn PE=2 SV=2
          Length = 1738

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +3

Query: 378  TCDIIPVAPHVF---TKLEYSLM*NAVGALWMVVHFFYFEVYIYYRSSSYIALK 530
            T  II ++P  F    +  Y L+  ++G +W+V+HF     Y Y   +  I  +
Sbjct: 1257 TMKIIAMSPAGFWQSRRNRYDLLVTSLGVVWVVLHFALLNAYTYMMGACVIVFR 1310


>sp|Q8IZF0|NALCN_HUMAN Sodium leak channel non-selective protein
            OS=Homo sapiens GN=NALCN PE=1 SV=1
          Length = 1738

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +3

Query: 378  TCDIIPVAPHVF---TKLEYSLM*NAVGALWMVVHFFYFEVYIYYRSSSYIALK 530
            T  II ++P  F    +  Y L+  ++G +W+V+HF     Y Y   +  I  +
Sbjct: 1257 TMKIIAMSPAGFWQSRRNRYDLLVTSLGVVWVVLHFALLNAYTYMMGACVIVFR 1310
tr_hit_id A5CA43
Definition tr|A5CA43|A5CA43_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 107
Score (bit) 67.0
E-value 6.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960242|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_O04, 5'
         (553 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5CA43|A5CA43_VITVI Putative uncharacterized protein OS=Vitis...    67   6e-10
tr|A9PDX9|A9PDX9_POPTR Putative uncharacterized protein OS=Popul...    65   2e-09
tr|Q8VY68|Q8VY68_ARATH Putative uncharacterized protein At4g0823...    64   5e-09
tr|A9P8L7|A9P8L7_POPTR Putative uncharacterized protein OS=Popul...    63   1e-08
tr|A9NK04|A9NK04_PICSI Putative uncharacterized protein OS=Picea...    62   2e-08
tr|A7NV91|A7NV91_VITVI Chromosome chr18 scaffold_1, whole genome...    60   8e-08
tr|B6UEP8|B6UEP8_MAIZE Putative uncharacterized protein OS=Zea m...    56   1e-06
tr|B6TN80|B6TN80_MAIZE Putative uncharacterized protein OS=Zea m...    55   3e-06
tr|B6T4E5|B6T4E5_MAIZE Putative uncharacterized protein OS=Zea m...    55   3e-06
tr|B6TCW9|B6TCW9_MAIZE Putative uncharacterized protein OS=Zea m...    54   4e-06
tr|Q10NP4|Q10NP4_ORYSJ Os03g0263700 protein OS=Oryza sativa subs...    54   6e-06
tr|B8AKD4|B8AKD4_ORYSI Putative uncharacterized protein OS=Oryza...    54   7e-06
tr|B6UE82|B6UE82_MAIZE Putative uncharacterized protein OS=Zea m...    53   1e-05
tr|B6UBC7|B6UBC7_MAIZE Putative uncharacterized protein OS=Zea m...    53   1e-05
tr|A9NYH6|A9NYH6_PICSI Putative uncharacterized protein OS=Picea...    47   9e-04
tr|Q84Q88|Q84Q88_ORYSJ Putative uncharacterized protein OJ1041F0...    37   0.70 
tr|B6TCS5|B6TCS5_MAIZE Putative uncharacterized protein OS=Zea m...    34   4.6  

>tr|A5CA43|A5CA43_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_015657 PE=4 SV=1
          Length = 102

 Score = 67.0 bits (162), Expect = 6e-10
 Identities = 38/107 (35%), Positives = 48/107 (44%)
 Frame = +2

Query: 41  MAYVEGGNIKXXXXXXXXXXXXXXXXGILNFITVFFATMFSLDAANGYGKKRSDNXXXXX 220
           MAYVE G +K                 I+NFI VFF TMFS++ ++ Y K          
Sbjct: 1   MAYVERGVVKSNRSIWRLRTITDFFWAIVNFIGVFFVTMFSMEKSDAYRKSSGSGKKWDG 60

Query: 221 XXXXXXXXXXXXXXXXXXXXXXXXKGMSNVRGIDHNSLPACGSCCGG 361
                                   +G+ NVRGIDH++LPACGSCCGG
Sbjct: 61  GGPGGPGRGPYGGGPRGPP-----RGLDNVRGIDHSALPACGSCCGG 102


>tr|A9PDX9|A9PDX9_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 100

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 38/106 (35%), Positives = 48/106 (45%)
 Frame = +2

Query: 41  MAYVEGGNIKXXXXXXXXXXXXXXXXGILNFITVFFATMFSLDAANGYGKKRSDNXXXXX 220
           MAYVE G +K                 I+NFI VFF+TMFS++  + Y K    +     
Sbjct: 1   MAYVERGVVKSQRSIWRLRTITDFFWAIVNFIGVFFSTMFSMEKTDAYRKGSGSS----- 55

Query: 221 XXXXXXXXXXXXXXXXXXXXXXXXKGMSNVRGIDHNSLPACGSCCG 358
                                   +G+ NVRGIDH+SLPACGSCCG
Sbjct: 56  -KKWDGGPGGPGSGPYGGGPRGPPRGLDNVRGIDHSSLPACGSCCG 100


>tr|Q8VY68|Q8VY68_ARATH Putative uncharacterized protein At4g08230
           OS=Arabidopsis thaliana GN=At4g08230 PE=4 SV=1
          Length = 113

 Score = 63.9 bits (154), Expect = 5e-09
 Identities = 37/113 (32%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
 Frame = +2

Query: 41  MAYVEGGNIKXXXXXXXXXXXXXXXXGILNFITVFFATMFSLDAANGYGKKRSDN----- 205
           MAYVEGG +K                 I+N I VFF TMFS++ ++ Y K    N     
Sbjct: 1   MAYVEGGVVKAKRPIWRLRTIKDFFLSIINLIQVFFVTMFSMEKSDAYRKGSKPNKKWGG 60

Query: 206 --XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMSNVRGIDHNSLPACGSCCG 358
                                          +G++++RG DHNSLPACGSCCG
Sbjct: 61  GMGGGGGGGGGSGGGGGGRGGGPPRGGLDNVRGLNDIRGADHNSLPACGSCCG 113


>tr|A9P8L7|A9P8L7_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 100

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 37/106 (34%), Positives = 47/106 (44%)
 Frame = +2

Query: 41  MAYVEGGNIKXXXXXXXXXXXXXXXXGILNFITVFFATMFSLDAANGYGKKRSDNXXXXX 220
           MAYVE G +K                 I+N I VFF+TMFS++  + Y K    +     
Sbjct: 1   MAYVERGVLKSKRSIWRLRTITDFFWAIVNLIGVFFSTMFSMEKTDAYRKGSGSSKKWDG 60

Query: 221 XXXXXXXXXXXXXXXXXXXXXXXXKGMSNVRGIDHNSLPACGSCCG 358
                                   +G+ NVRGIDH+SLPACGSCCG
Sbjct: 61  GPGGPGSGPYGGGPRGPP------RGLDNVRGIDHSSLPACGSCCG 100


>tr|A9NK04|A9NK04_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 105

 Score = 62.0 bits (149), Expect = 2e-08
 Identities = 34/107 (31%), Positives = 44/107 (41%)
 Frame = +2

Query: 41  MAYVEGGNIKXXXXXXXXXXXXXXXXGILNFITVFFATMFSLDAANGYGKKRSDNXXXXX 220
           MAY+E G +K                 ++N I  F  TMFS++A   Y KK         
Sbjct: 1   MAYIENGTVKAKRSMWRLSFIIELFWAVVNLIANFIRTMFSMEATESYKKKSGSRGGGWD 60

Query: 221 XXXXXXXXXXXXXXXXXXXXXXXXKGMSNVRGIDHNSLPACGSCCGG 361
                                   +G+ NV+GI+HNS PACGSCCGG
Sbjct: 61  SGPGGGGGSGGGPYGSGPRRPP--RGLDNVQGINHNSAPACGSCCGG 105


>tr|A7NV91|A7NV91_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015344001
           PE=4 SV=1
          Length = 107

 Score = 60.1 bits (144), Expect = 8e-08
 Identities = 31/80 (38%), Positives = 40/80 (50%)
 Frame = +2

Query: 122 ILNFITVFFATMFSLDAANGYGKKRSDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGM 301
           I+NFI VFF TMFS++ ++ Y K                                  +G+
Sbjct: 33  IVNFIGVFFVTMFSMEKSDAYRKSSGSGKKWDGGGPGGPGRGPYGGGPRGPP-----RGL 87

Query: 302 SNVRGIDHNSLPACGSCCGG 361
            NVRGIDH++LPACGSCCGG
Sbjct: 88  DNVRGIDHSALPACGSCCGG 107


>tr|B6UEP8|B6UEP8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 112

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 34/112 (30%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
 Frame = +2

Query: 41  MAYVEGGNIKXXXXXXXXXXXXXXXXGILNFITVFFATMFSLDAANGY------GKKRSD 202
           MAYVE G +K                 I+NFI +FF T+FS+D  + Y      GKK   
Sbjct: 1   MAYVERGVVKDKRTIWRLSIISDFFRAIVNFIRIFFDTLFSVDKTDSYKKGYGAGKKWDG 60

Query: 203 NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMSNVRGIDHNSLPACGSCCG 358
                                         + +S+++  DH+SLPACGSCCG
Sbjct: 61  GPGGGGGRGPYGGGGGGGGFGGGGGGGRGPRTLSDIQSNDHSSLPACGSCCG 112


>tr|B6TN80|B6TN80_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 110

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
 Frame = +2

Query: 41  MAYVEGGNIKXXXXXXXXXXXXXXXXGILNFITVFFATMFSLDAAN----GYGKKRSDNX 208
           MAYVE G +K                 I+NFI +FF T+FS+D  +    GYG  +  + 
Sbjct: 1   MAYVERGVVKDKRTIWRLSIISDFFRAIVNFIRIFFDTLFSVDKTDSYKKGYGAGKKWDG 60

Query: 209 XXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMSNVRGIDHNSLPACGSCCG 358
                                       + +S+++  DH+SLPACGSCCG
Sbjct: 61  GPGGGGGRGPYGGGGGGFGGGGGGGRGPRTLSDIQSNDHSSLPACGSCCG 110


>tr|B6T4E5|B6T4E5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 111

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
 Frame = +2

Query: 41  MAYVEGGNIKXXXXXXXXXXXXXXXXGILNFITVFFATMFSLDAAN----GYGK-KRSDN 205
           MAYVE G +K                 I++FI +FF T+FSLD  +    GYG  K+ D 
Sbjct: 1   MAYVERGVVKDKRTIWRLSIISDFFWAIVSFIRIFFDTLFSLDKTDNFKKGYGAGKKWDG 60

Query: 206 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMSNVRGIDHNSLPACGSCCG 358
                                        + +S+++  DH+SLPACGSCCG
Sbjct: 61  GPGGGGRGPYGGGGGGGFGGGGGGGSRGPRTLSDIQSNDHSSLPACGSCCG 111


>tr|B6TCW9|B6TCW9_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 111

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
 Frame = +2

Query: 41  MAYVEGGNIKXXXXXXXXXXXXXXXXGILNFITVFFATMFSLDAAN----GYGK-KRSDN 205
           MAYVE G +K                 I++FI +FF T+FSLD  +    GYG  K+ D 
Sbjct: 1   MAYVERGVLKDKRTIWRLSIISDFFWAIVSFIRIFFDTLFSLDKTDNFKKGYGAGKKWDG 60

Query: 206 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMSNVRGIDHNSLPACGSCCG 358
                                        + +S+++  DH+SLPACGSCCG
Sbjct: 61  GPGGGGRGPYGGGGGGGFGGGGGGGSRGPRTLSDIQSNDHSSLPACGSCCG 111