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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960256
Clone id TST39A01NGRL0006_O18
Library
Length 524
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_O18. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGTGAGAGAGAGAGAGAGCGCCT
AGCAAAGATGATATACTACCATGGAGTATGGATTTCCATCCCCTTCATCTTGTTCGTGAT
CGGGTTGCTGGTGCTTCTGTGTTTGCTTATCCAGCGGCGGCGTCGCATGCAGCAGAGCAC
ATACTACTACCCCAACAACCCAGCCCCCAACTCAGGGTACCCATTTCAATACCCGCAGCC
GCAGCCTCCACCGGGATACCCTCCAAACCCTCCTGCCCAGGGCGTCCCCTATCCTGCCCC
CCCTACATCCTACCCTGCTTCTAAGGTATGAGTCTTCATCGTTTACATGTGGGCACATGC
ACTGCTCTCCAATGTTTGGAGATGGATATCTGGCCCTTCAGGACTTGAAAATTCCAAAAA
ATTTTGCACTATTTTCCATGCAAAAATGTATGTAGCAGCGGAAGTTACCGAACTGCCTGC
TTGTATATAGTCGAGAGGAAGAATTTGCTATAATTCCTTTGATT
■■Homology search results ■■ -
sp_hit_id Q9ET47
Definition sp|Q9ET47|ESPN_MOUSE Espin OS=Mus musculus
Align length 66
Score (bit) 32.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960256|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_O18, 5'
         (524 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9ET47|ESPN_MOUSE Espin OS=Mus musculus GN=Espn PE=1 SV=2           32   1.8  
sp|Q9UEW8|STK39_HUMAN STE20/SPS1-related proline-alanine-rich pr...    32   2.4  
sp|Q9Y618|NCOR2_HUMAN Nuclear receptor corepressor 2 OS=Homo sap...    32   2.4  
sp|Q5R6L1|PKNX2_PONAB Homeobox protein PKNOX2 OS=Pongo abelii GN...    31   4.1  
sp|Q96KN3|PKNX2_HUMAN Homeobox protein PKNOX2 OS=Homo sapiens GN...    31   4.1  
sp|P52947|PDX1_RAT Pancreas/duodenum homeobox protein 1 OS=Rattu...    31   4.1  
sp|Q5B5B0|PAN1_EMENI Actin cytoskeleton-regulatory complex prote...    31   4.1  
sp|P04730|GDB3_WHEAT Gamma-gliadin (Fragment) OS=Triticum aestiv...    31   4.1  
sp|Q17103|MYC_ASTVU Myc protein (Fragment) OS=Asterias vulgaris ...    30   5.3  
sp|A7H9F3|IF2_ANADF Translation initiation factor IF-2 OS=Anaero...    30   5.3  
sp|O95466|FMNL_HUMAN Formin-like protein 1 OS=Homo sapiens GN=FM...    30   5.3  
sp|Q61329|ZFHX3_MOUSE Zinc finger homeobox protein 3 OS=Mus musc...    30   7.0  
sp|Q15911|ZFHX3_HUMAN Zinc finger homeobox protein 3 OS=Homo sap...    30   7.0  
sp|Q9VS60|SMSR1_DROME Sphingomyelin synthase-related 1 OS=Drosop...    30   7.0  
sp|Q8CFT2|SET1B_MOUSE Histone-lysine N-methyltransferase SETD1B ...    30   9.1  
sp|Q21WJ5|IF2_RHOFD Translation initiation factor IF-2 OS=Rhodof...    30   9.1  
sp|A4TCF8|IF2_MYCGI Translation initiation factor IF-2 OS=Mycoba...    30   9.1  
sp|Q6PGH4|CL034_MOUSE Uncharacterized protein C12orf34 homolog O...    30   9.1  
sp|Q8NDZ2|CE025_HUMAN Uncharacterized protein C5orf25 OS=Homo sa...    30   9.1  

>sp|Q9ET47|ESPN_MOUSE Espin OS=Mus musculus GN=Espn PE=1 SV=2
          Length = 871

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = +1

Query: 190 PQQPSPQLRVPISIPAAAASTGIPSKPSCPGRPLSCPPYILPCF*GMSLHRLHVGTCTAL 369
           P  P P    P S P     TG    P  PG P   PP       G+ L+ +++ T   L
Sbjct: 428 PSPPPPPPPPPPSFPPPPPPTGTQPPPPPPGYPAPNPPV------GLHLNNIYMQTKNKL 481

Query: 370 QCLEMD 387
           + +E+D
Sbjct: 482 RHVEVD 487


>sp|Q9UEW8|STK39_HUMAN STE20/SPS1-related proline-alanine-rich
           protein kinase OS=Homo sapiens GN=STK39 PE=1 SV=2
          Length = 547

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 178 HILLPQQPSPQLRVPISIPAAAASTGIPSKPSCP 279
           H+ LPQQ +P      + PAAA +   P+ P+ P
Sbjct: 10  HVQLPQQAAPVTAAAAAAPAAATAAPAPAAPAAP 43


>sp|Q9Y618|NCOR2_HUMAN Nuclear receptor corepressor 2 OS=Homo
           sapiens GN=NCOR2 PE=1 SV=1
          Length = 2517

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 190 PQQPSPQLRVPISIPAAAASTGIPSKPSCPGRPLSCPPYILP 315
           P  P    R PI    A+ +TG P+ P  P  P S PP ++P
Sbjct: 783 PTPPRRTSRAPIEPTPASEATGAPTPPPAPPSP-SAPPPVVP 823


>sp|Q5R6L1|PKNX2_PONAB Homeobox protein PKNOX2 OS=Pongo abelii
           GN=PKNOX2 PE=2 SV=1
          Length = 472

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = +1

Query: 193 QQPSPQLRVPISIPAAAASTGIPSKPSCP 279
           Q PS    V IS P+AAAST +PS P  P
Sbjct: 35  QPPSKAQAVHISAPSAAASTPVPSAPIDP 63


>sp|Q96KN3|PKNX2_HUMAN Homeobox protein PKNOX2 OS=Homo sapiens
           GN=PKNOX2 PE=2 SV=2
          Length = 472

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = +1

Query: 193 QQPSPQLRVPISIPAAAASTGIPSKPSCP 279
           Q PS    V IS P+AAAST +PS P  P
Sbjct: 35  QPPSKAQAVHISAPSAAASTPVPSAPIDP 63


>sp|P52947|PDX1_RAT Pancreas/duodenum homeobox protein 1 OS=Rattus
           norvegicus GN=Pdx1 PE=2 SV=1
          Length = 283

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +1

Query: 175 EHILLPQQPSPQLRVPISIPAAAASTGIPSKPSCPGRPLSCPP 303
           E + LP  P P   VP  +PAAA    +PS  S   +P S  P
Sbjct: 234 ELLALPPPPPPGGAVPSGVPAAAREGRLPSGLSASPQPSSIAP 276


>sp|Q5B5B0|PAN1_EMENI Actin cytoskeleton-regulatory complex protein
            pan1 OS=Emericella nidulans GN=pan1 PE=3 SV=1
          Length = 1484

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 190  PQQPSPQLRVPISIPAAAASTGIPSKPSCPGRPLSCPP 303
            P  P P    P  +P+A +  GIP  P  P  P + PP
Sbjct: 1401 PPPPPPPAAAPPPLPSAESPAGIPPPPPPPMAPPAPPP 1438


>sp|P04730|GDB3_WHEAT Gamma-gliadin (Fragment) OS=Triticum aestivum
           PE=2 SV=1
          Length = 244

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +1

Query: 190 PQQPSPQLRVPISIPAAAASTGIPSKPSCPGRPLSCP 300
           PQQPSPQ +  + I + A  T IPS     G+P S P
Sbjct: 25  PQQPSPQPQQVVQIISPATPTTIPS----AGKPTSAP 57


>sp|Q17103|MYC_ASTVU Myc protein (Fragment) OS=Asterias vulgaris
           GN=MYC PE=2 SV=1
          Length = 407

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 7/35 (20%)
 Frame = -2

Query: 172 LHATPPL-------DKQTQKHQQPDHEQDEGDGNP 89
           L+ TPPL       DK++ +H  P H Q +GDG+P
Sbjct: 47  LYPTPPLSPSHNPDDKESDRH--PRHHQQDGDGSP 79


>sp|A7H9F3|IF2_ANADF Translation initiation factor IF-2
           OS=Anaeromyxobacter sp. (strain Fw109-5) GN=infB PE=3
           SV=1
          Length = 970

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 199 PSPQLRVPI-SIPAAAASTGIPSKPSCPG 282
           PSP +R P  S+PA A   G P +P+ PG
Sbjct: 172 PSPAVRPPAPSVPAGAQPPGAPVRPAAPG 200
tr_hit_id A7PD83
Definition tr|A7PD83|A7PD83_VITVI Chromosome chr17 scaffold_12, whole genome shotgun sequence OS=Vitis vinifera
Align length 45
Score (bit) 35.0
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960256|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_O18, 5'
         (524 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PD83|A7PD83_VITVI Chromosome chr17 scaffold_12, whole genom...    35   2.3  
tr|Q9QY28|Q9QY28_MOUSE Espin (Fragment) OS=Mus musculus GN=Espn ...    34   3.9  
tr|Q7CZF1|Q7CZF1_AGRT5 Putative uncharacterized protein OS=Agrob...    34   3.9  
tr|Q5YPX6|Q5YPX6_NOCFA Putative uncharacterized protein OS=Nocar...    34   5.1  
tr|A5ARP0|A5ARP0_VITVI Putative uncharacterized protein OS=Vitis...    34   5.1  
tr|B6KH75|B6KH75_TOXGO Putative uncharacterized protein OS=Toxop...    34   5.1  
tr|A8HSB6|A8HSB6_AZOC5 Putative uncharacterized protein OS=Azorh...    33   8.6  
tr|A4VFW7|A4VFW7_PSEU5 Selenocysteine-specific elongation factor...    33   8.6  

>tr|A7PD83|A7PD83_VITVI Chromosome chr17 scaffold_12, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016175001
           PE=4 SV=1
          Length = 772

 Score = 35.0 bits (79), Expect = 2.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 181 ILLPQQPSPQLRVPISIPAAAASTGIPSKPSCPGRPLSCPPYILP 315
           I+L ++  P L+VP   P  +  +  P  P  P +PL  PP ++P
Sbjct: 182 IILEKEAKPVLKVPTLQPQVSVPSPPPPPPPVPSQPLPPPPQVIP 226


>tr|Q9QY28|Q9QY28_MOUSE Espin (Fragment) OS=Mus musculus GN=Espn
           PE=2 SV=1
          Length = 532

 Score = 34.3 bits (77), Expect = 3.9
 Identities = 21/67 (31%), Positives = 29/67 (43%)
 Frame = +1

Query: 187 LPQQPSPQLRVPISIPAAAASTGIPSKPSCPGRPLSCPPYILPCF*GMSLHRLHVGTCTA 366
           LP  P P    P S P     TG    P  PG P   PP       G+ L+ +++ T   
Sbjct: 108 LPSPPPPPPPPPPSFPPPPPPTGTQPPPPSPGYPAPNPPV------GLHLNNIYMQTKNK 161

Query: 367 LQCLEMD 387
           L+ +E+D
Sbjct: 162 LRHVEVD 168


>tr|Q7CZF1|Q7CZF1_AGRT5 Putative uncharacterized protein
           OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970)
           GN=AGR_C_2517 PE=4 SV=2
          Length = 413

 Score = 34.3 bits (77), Expect = 3.9
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +1

Query: 175 EHILLPQQPSPQLRVPISIPA--AAASTGIPSKPSCPGRPLSCPP 303
           E +  PQ+P P    P+S PA  AA +  +P +PS P +P+  PP
Sbjct: 149 EPVKQPQRPEPSKPAPVSRPAPVAATAAAMPPRPSTPPQPV--PP 191


>tr|Q5YPX6|Q5YPX6_NOCFA Putative uncharacterized protein OS=Nocardia
           farcinica GN=NFA_49130 PE=4 SV=1
          Length = 892

 Score = 33.9 bits (76), Expect = 5.1
 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
 Frame = +1

Query: 181 ILLPQQPSPQ--LRVPISIPAAAASTGIPSKPSCPGRPLSCPPYILPCF*GMSLHRLHVG 354
           + LPQ P  Q  LR PI +P +  +   PS  S P    S PP         S  R+H  
Sbjct: 23  VSLPQSPKQQSSLRAPICVPRSDTARSQPSARSVPTN--SRPP--------TSSSRMHWP 72

Query: 355 --TCTALQCLEMDIWPF 399
             TCT L+  ++D W F
Sbjct: 73  RWTCTMLKRSQVDAWNF 89


>tr|A5ARP0|A5ARP0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_031829 PE=4 SV=1
          Length = 540

 Score = 33.9 bits (76), Expect = 5.1
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 190 PQQPS-PQLRVPISIPAAAASTGIPSKPSCPGRPLSCP 300
           P QPS P L  P S PA+ +    PS+PS P +P S P
Sbjct: 106 PSQPSQPALESPPSRPASGSRPSXPSRPSQPSQPASEP 143


>tr|B6KH75|B6KH75_TOXGO Putative uncharacterized protein OS=Toxoplasma
            gondii ME49 GN=TGME49_048510 PE=4 SV=1
          Length = 11862

 Score = 33.9 bits (76), Expect = 5.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 220  PISIPAAAASTGIPSKPSCPGRPLSC 297
            P S+ +A+A   + S PSCP  PLSC
Sbjct: 1851 PASVTSASAFASVSSSPSCPSSPLSC 1876


>tr|A8HSB6|A8HSB6_AZOC5 Putative uncharacterized protein
           OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM
           5975 / ORS 571) GN=AZC_4163 PE=4 SV=1
          Length = 1161

 Score = 33.1 bits (74), Expect = 8.6
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +1

Query: 190 PQQPSPQLRVPISIPAAAASTGIPSKPSCP--GRPLSCPPYIL 312
           P  P+P++   +S  AAAA    P+ P  P  G+PLS PP +L
Sbjct: 234 PWTPAPEVPPDVSTAAAAAEAVQPADPLLPPNGQPLSPPPALL 276


>tr|A4VFW7|A4VFW7_PSEU5 Selenocysteine-specific elongation factor
           OS=Pseudomonas stutzeri (strain A1501) GN=selB PE=4 SV=1
          Length = 638

 Score = 33.1 bits (74), Expect = 8.6
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -1

Query: 458 LLHTFLHGK*CKIFWNFQVLKGQISISKHWRAVHV 354
           LLH  LH    +I  +FQ+L G+    KHW  VHV
Sbjct: 259 LLHPLLHAPTQRIDVDFQLLPGEAHELKHWTPVHV 293