DK960268
Clone id TST39A01NGRL0006_P07
Library
Length 660
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_P07. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GCTTCATCCCAGCCTGCTATGGCAGCTTCTCAGCTGCACTCATCATTTTCACCTTGCATT
CGGCAGCAAACACAGAAGATTGTGCGGGAGAAGCAAGGTGTGACATTTTCGCTGGCCACT
CGACAAGGGCTTGCCTTTCCTGTACGTGTTTCCAGTGGCCCTCTTTACGCCATGGCAGCC
TCTACTCTGCAGCAACAGGTTGAGGTTTGTGAGAAGCAAGAGGTCCTTGAAAAGGAAGAG
CAGGCATCAGGAGCTCAATTGTCTAGGATTGAAATTCGAACTCTACGGGGCTGCAGGCTC
GGAATCGCCATGTATCCTGACTTTGTTTATAATGCAGAGGGAGGTGGAGGTCCTGGAAGT
GCAGAGGAGCTTCCTGATGGTAAACTGGCAGTTGAATTCGATATCAAGAGTCTTTACATT
CCGGCTGTGGAATGGCGGACCACCAAGTTCCTTGGATTGCCATTGCCCCCTTTCCTTTGC
ATACAGGTTGTTCCCCAGTCTCTGAAGGGCTTCATCGAGCGGGCCAGAGGAAAGGTGGAG
CTGGAGTTCTCAGCCAATTTTTTATTTTCCGTGGGCTCTTTGTATCGTGCTCCGCCTCTT
GTGGTGAACACACTGTTGACAACCGAAACAACCGAAGGCCGACTTCGAATGGGGCAGGGC
■■Homology search results ■■ -
sp_hit_id Q9ULX3
Definition sp|Q9ULX3|NOB1_HUMAN RNA-binding protein NOB1 OS=Homo sapiens
Align length 46
Score (bit) 35.8
E-value 0.21
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960268|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_P07, 5'
(660 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9ULX3|NOB1_HUMAN RNA-binding protein NOB1 OS=Homo sapiens GN... 36 0.21
sp|Q5RBB3|NOB1_PONAB RNA-binding protein NOB1 OS=Pongo abelii GN... 35 0.35
sp|Q4R537|NOB1_MACFA RNA-binding protein NOB1 OS=Macaca fascicul... 33 1.0
sp|Q3T042|NOB1_BOVIN RNA-binding protein NOB1 OS=Bos taurus GN=N... 32 3.9
sp|P18160|KYK1_DICDI Dual specificity protein kinase dpyk1 OS=Di... 31 5.1

>sp|Q9ULX3|NOB1_HUMAN RNA-binding protein NOB1 OS=Homo sapiens
GN=NOB1 PE=1 SV=1
Length = 412

Score = 35.8 bits (81), Expect = 0.21
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3

Query: 400 RIQLPVYHQEAPLHFQDLHLPLHYKQSQDTWR-FRACSPVEFEFQS 266
++ + H E PLH HLP K Q+T + AC P EF S
Sbjct: 111 KVSSSIQHPETPLHISGFHLPYKPKPPQETEKGHSACEPENLEFSS 156


>sp|Q5RBB3|NOB1_PONAB RNA-binding protein NOB1 OS=Pongo abelii
GN=NOB1 PE=2 SV=1
Length = 411

Score = 35.0 bits (79), Expect = 0.35
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3

Query: 400 RIQLPVYHQEAPLHFQDLHLPLHYKQSQDTWR-FRACSPVEFEFQS 266
++ + H E PLH HLP K Q+T + AC P EF S
Sbjct: 111 KVSSSIQHPETPLHISGFHLPSKPKPPQETEKGHPACEPENLEFSS 156


>sp|Q4R537|NOB1_MACFA RNA-binding protein NOB1 OS=Macaca
fascicularis GN=NOB1 PE=2 SV=1
Length = 412

Score = 33.5 bits (75), Expect = 1.0
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -3

Query: 400 RIQLPVYHQEAPLHFQDLHLPLHYKQSQDTWR-FRACSPVEFEFQS 266
++ + H E PLH HLP K Q+ + AC P EF S
Sbjct: 111 KVSSSIQHPETPLHISGFHLPSKPKSPQEAEKGHPACEPENLEFSS 156


>sp|Q3T042|NOB1_BOVIN RNA-binding protein NOB1 OS=Bos taurus GN=NOB1
PE=2 SV=1
Length = 413

Score = 31.6 bits (70), Expect = 3.9
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -3

Query: 400 RIQLPVYHQEAPLHFQDLHLPLHYKQSQDTWRFR--ACSPVEFEFQS 266
++ + H E PLH HLP K ++T R A P + EF S
Sbjct: 111 KVSSSIQHPETPLHVSGFHLPSKPKPPRETVEHRHPASEPEDLEFSS 157


>sp|P18160|KYK1_DICDI Dual specificity protein kinase dpyk1
OS=Dictyostelium discoideum GN=splA PE=1 SV=3
Length = 2410

Score = 31.2 bits (69), Expect = 5.1
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Frame = +3

Query: 468 PFPLHTGCSPVSEGLHRAGQRKGGAGV---LSQFFIFRG--LFVSCSASCGEHT 614
PF H G P S G G++ GG+ + FF F G + SC CG +T
Sbjct: 1601 PFIKHIGREPKSYGFSSEGEKYGGSEIGEPYGPFFFFDGDSIASSCVIGCGINT 1654


tr_hit_id Q6EP75
Definition tr|Q6EP75|Q6EP75_ORYSJ Os02g0677600 protein OS=Oryza sativa subsp. japonica
Align length 135
Score (bit) 131.0
E-value 3.0e-29
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960268|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_P07, 5'
(660 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q6EP75|Q6EP75_ORYSJ Os02g0677600 protein OS=Oryza sativa subs... 131 3e-29
tr|A2X8A0|A2X8A0_ORYSI Putative uncharacterized protein OS=Oryza... 131 3e-29
tr|A9PEN1|A9PEN1_POPTR Putative uncharacterized protein OS=Popul... 129 2e-28
tr|B6U3W9|B6U3W9_MAIZE Putative uncharacterized protein OS=Zea m... 127 8e-28
tr|A7QVM0|A7QVM0_VITVI Chromosome chr16 scaffold_189, whole geno... 125 2e-27
tr|A9S6Y3|A9S6Y3_PHYPA Predicted protein OS=Physcomitrella paten... 124 5e-27
tr|A9T1A6|A9T1A6_PHYPA Predicted protein (Fragment) OS=Physcomit... 117 8e-25
tr|A9TYZ3|A9TYZ3_PHYPA Predicted protein OS=Physcomitrella paten... 116 1e-24
tr|Q9FIS4|Q9FIS4_ARATH Arabidopsis thaliana genomic DNA, chromos... 100 6e-20
tr|A3YTP4|A3YTP4_9SYNE Putative uncharacterized protein OS=Synec... 98 4e-19
tr|A2BZJ7|A2BZJ7_PROM1 Putative uncharacterized protein OS=Proch... 93 2e-17
tr|A2CAI5|A2CAI5_PROM3 Putative uncharacterized protein OS=Proch... 92 3e-17
tr|Q7V858|Q7V858_PROMM Putative uncharacterized protein MTG10.17... 92 4e-17
tr|Q56YA7|Q56YA7_ARATH Putative uncharacterized protein At5g6214... 89 3e-16
tr|A8HPS9|A8HPS9_CHLRE Putative uncharacterized protein OS=Chlam... 89 3e-16
tr|Q46HZ5|Q46HZ5_PROMT Putative uncharacterized protein OS=Proch... 87 7e-16
tr|A9BBB2|A9BBB2_PROM4 Putative uncharacterized protein OS=Proch... 86 2e-15
tr|B5IJQ2|B5IJQ2_9CHRO Putative uncharacterized protein OS=Cyano... 84 8e-15
tr|Q7VAI6|Q7VAI6_PROMA Uncharacterized conserved protein OS=Proc... 63 2e-08
tr|A8I1H0|A8I1H0_CHLRE Predicted protein (Fragment) OS=Chlamydom... 39 0.37
tr|B2RAR2|B2RAR2_HUMAN cDNA, FLJ95064, highly similar to Homo sa... 36 2.4
tr|Q8S0M1|Q8S0M1_ORYSJ Receptor protein kinase-like OS=Oryza sat... 34 7.1
tr|Q0JH06|Q0JH06_ORYSJ Os01g0892200 protein OS=Oryza sativa subs... 34 7.1
tr|A3A0F6|A3A0F6_ORYSJ Putative uncharacterized protein OS=Oryza... 34 7.1
tr|A2WXU9|A2WXU9_ORYSI Putative uncharacterized protein OS=Oryza... 34 7.1

>tr|Q6EP75|Q6EP75_ORYSJ Os02g0677600 protein OS=Oryza sativa subsp.
japonica GN=P0135D07.45 PE=2 SV=1
Length = 256

Score = 131 bits (330), Expect = 3e-29
Identities = 68/135 (50%), Positives = 88/135 (65%), Gaps = 4/135 (2%)
Frame = +1

Query: 268 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXX----SAEELPDGKLAVEFDIKSLYIPAVEW 435
+E RT GCRLGI+ YPDF YNA+ S E+ G + VEFD+ SLYIPA+
Sbjct: 75 VEFRTRDGCRLGISRYPDFAYNAQGGRGVGVVASSGED--SGTVLVEFDVSSLYIPAMSG 132

Query: 436 RTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNXX 615
TTKFLGLPLPPFL I ++P++L+G I+ G+V+L+F + F FSVGS+YRAPPL V+
Sbjct: 133 ATTKFLGLPLPPFLKIDILPEALRGNIDPTSGQVDLKFRSRFCFSVGSIYRAPPLFVDTT 192

Query: 616 XXXXXXXGRLRMGQG 660
G +R G G
Sbjct: 193 LTSEESSGAIRRGTG 207


>tr|A2X8A0|A2X8A0_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_08458 PE=4 SV=1
Length = 256

Score = 131 bits (330), Expect = 3e-29
Identities = 68/135 (50%), Positives = 88/135 (65%), Gaps = 4/135 (2%)
Frame = +1

Query: 268 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXX----SAEELPDGKLAVEFDIKSLYIPAVEW 435
+E RT GCRLGI+ YPDF YNA+ S E+ G + VEFD+ SLYIPA+
Sbjct: 75 VEFRTRDGCRLGISRYPDFAYNAQGGRGVGVVASSGED--SGTVLVEFDVSSLYIPAMSG 132

Query: 436 RTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNXX 615
TTKFLGLPLPPFL I ++P++L+G I+ G+V+L+F + F FSVGS+YRAPPL V+
Sbjct: 133 ATTKFLGLPLPPFLKIDILPEALRGNIDPTSGQVDLKFRSRFCFSVGSIYRAPPLFVDTT 192

Query: 616 XXXXXXXGRLRMGQG 660
G +R G G
Sbjct: 193 LTSEESSGAIRRGTG 207


>tr|A9PEN1|A9PEN1_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 237

Score = 129 bits (323), Expect = 2e-28
Identities = 65/135 (48%), Positives = 87/135 (64%), Gaps = 4/135 (2%)
Frame = +1

Query: 268 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXXSAEELPDGK----LAVEFDIKSLYIPAVEW 435
+ +TL GC+LGI+ YPDF YNA+ + + D ++V FD+K+LYIP +
Sbjct: 54 VNFKTLGGCKLGISRYPDFEYNAQGGTGTGTCTKAKDSSDLNTVSVSFDMKTLYIPPLTS 113

Query: 436 RTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNXX 615
TTKFLGLPLPPFL I +VP+ +G I++ GKV+LEF A F FSVG++YRAPPL+V
Sbjct: 114 GTTKFLGLPLPPFLKIDMVPELFQGTIDQDSGKVDLEFMAKFWFSVGTIYRAPPLLVKTR 173

Query: 616 XXXXXXXGRLRMGQG 660
G +R GQG
Sbjct: 174 LTSEESTGTIRSGQG 188


>tr|B6U3W9|B6U3W9_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 270

Score = 127 bits (318), Expect = 8e-28
Identities = 65/137 (47%), Positives = 86/137 (62%), Gaps = 6/137 (4%)
Frame = +1

Query: 268 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXX------SAEELPDGKLAVEFDIKSLYIPAV 429
+E RT GCRLGIA YPDF YNA+ S E+ G + V+FD+ +LYIP +
Sbjct: 85 VEFRTRDGCRLGIARYPDFAYNAQGGRGVGAGRGSKSGEDDGIGTVLVDFDVATLYIPPM 144

Query: 430 EWRTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVN 609
TT+FLGLPLPP+L I ++P++L G I+RA G V+L+F + F FSVGS+Y+APPL V
Sbjct: 145 SGATTRFLGLPLPPYLKIDILPEALGGTIDRATGHVDLKFRSRFCFSVGSVYKAPPLFVE 204

Query: 610 XXXXXXXXXGRLRMGQG 660
G +R G G
Sbjct: 205 TTLTSEESRGAIRSGTG 221


>tr|A7QVM0|A7QVM0_VITVI Chromosome chr16 scaffold_189, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00007419001
PE=4 SV=1
Length = 240

Score = 125 bits (314), Expect = 2e-27
Identities = 67/137 (48%), Positives = 88/137 (64%), Gaps = 6/137 (4%)
Frame = +1

Query: 268 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXXS--AEELPDGKL----AVEFDIKSLYIPAV 429
++ RTL C+LGI+ YPDF YNAE + A + D L +V FD+K+LYIP +
Sbjct: 56 VKFRTLGACKLGISRYPDFEYNAEGGTGTGTGTAPVVEDNGLKDQVSVCFDLKTLYIPPL 115

Query: 430 EWRTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVN 609
T++FLGLP PPFL I +VP+ +G I R GKV+LEF A FLFSVG++YRAPPL+V
Sbjct: 116 TTATSRFLGLPFPPFLRIDIVPELFQGNISRESGKVDLEFKAKFLFSVGNIYRAPPLMVA 175

Query: 610 XXXXXXXXXGRLRMGQG 660
GR+R G+G
Sbjct: 176 TVLTSEESEGRMRRGRG 192


>tr|A9S6Y3|A9S6Y3_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_163179 PE=4 SV=1
Length = 263

Score = 124 bits (311), Expect = 5e-27
Identities = 61/129 (47%), Positives = 81/129 (62%)
Frame = +1

Query: 274 IRTLRGCRLGIAMYPDFVYNAEXXXXXXSAEELPDGKLAVEFDIKSLYIPAVEWRTTKFL 453
+RT +GC LG++ YPDFVYNAE A ++ DG+ +V+FD + IP V +RTT L
Sbjct: 88 LRTTKGCGLGVSRYPDFVYNAEGGGGRGKAVKMEDGRWSVKFDAAEVNIPDVGFRTTTLL 147

Query: 454 GLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNXXXXXXXX 633
G+PLPP + I++VP+ L+G ++R GKVEL F A F FS G LYR PL+V
Sbjct: 148 GIPLPPPIKIEIVPEFLEGIVDRDTGKVELNFLAKFFFSTGPLYRPSPLIVETLLTTEKA 207

Query: 634 XGRLRMGQG 660
G LR G G
Sbjct: 208 QGELRGGTG 216


>tr|A9T1A6|A9T1A6_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_138615 PE=4 SV=1
Length = 179

Score = 117 bits (292), Expect = 8e-25
Identities = 57/131 (43%), Positives = 78/131 (59%)
Frame = +1

Query: 268 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXXSAEELPDGKLAVEFDIKSLYIPAVEWRTTK 447
+E+RT +GC LG++ YPDFVY+AE A +L DG+ V FD L+IP V +RT
Sbjct: 2 VELRTTKGCGLGVSRYPDFVYDAEGGGGSGKAVKLSDGRWRVHFDAAELHIPDVSFRTAT 61

Query: 448 FLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNXXXXXX 627
LG+P+PP + I++V SL+G ++R GK+EL F + F FS Y PPLVV+
Sbjct: 62 LLGVPIPPPIRIEIVTDSLEGTVDRDIGKIELRFQSRFYFSATRFYEPPPLVVDTVLTTE 121

Query: 628 XXXGRLRMGQG 660
G R G G
Sbjct: 122 TTYGEFRGGAG 132


>tr|A9TYZ3|A9TYZ3_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_172769 PE=4 SV=1
Length = 266

Score = 116 bits (290), Expect = 1e-24
Identities = 58/131 (44%), Positives = 79/131 (60%)
Frame = +1

Query: 268 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXXSAEELPDGKLAVEFDIKSLYIPAVEWRTTK 447
+ +RT +GC LGI++YPDFVYNAE A +L DG V+FD + IP V +RTTK
Sbjct: 87 VVLRTTKGCGLGISVYPDFVYNAEGGGGSGKAVKLSDGCWRVQFDATEINIPDVSFRTTK 146

Query: 448 FLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNXXXXXX 627
L +P+PP + I++VP +L+G ++ GK+ L F + F FS LYR PPLVV+
Sbjct: 147 LLSVPIPPPIRIKIVPDTLEGTVDLETGKIVLRFQSKFYFSATDLYRPPPLVVDTVLTTE 206

Query: 628 XXXGRLRMGQG 660
G R G G
Sbjct: 207 DTHGEQRGGTG 217


>tr|Q9FIS4|Q9FIS4_ARATH Arabidopsis thaliana genomic DNA, chromosome
5, P1 clone:MTG10 (At5g62140) OS=Arabidopsis thaliana
GN=At5g62140 PE=2 SV=1
Length = 241

Score = 100 bits (250), Expect = 6e-20
Identities = 56/141 (39%), Positives = 82/141 (58%), Gaps = 7/141 (4%)
Frame = +1

Query: 259 LSRIEIRTLRGCRLGIAMYPDFVYNAEXXXXXXSAEELPD------GKLAVEFDIKSLYI 420
L + +T+ +LGI+ YPDF Y+ +A+++ D +L+V F++ +LYI
Sbjct: 51 LYSVSFKTIGTGKLGISRYPDFEYSPLGGSGAGTAKKIDDKNRASNSELSVCFNVATLYI 110

Query: 421 PAVEWRTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSV-GSLYRAPP 597
P++ +TTKFLG PLPPFL I + P+ +G I + GKVELEF A F F+ G +YRAP
Sbjct: 111 PSLTSQTTKFLGFPLPPFLKIDISPEIFQGTINQESGKVELEFMAKFFFTAGGGIYRAPA 170

Query: 598 LVVNXXXXXXXXXGRLRMGQG 660
LVV G + G+G
Sbjct: 171 LVVRTVLTTEESIGENKRGKG 191


>tr|A3YTP4|A3YTP4_9SYNE Putative uncharacterized protein
OS=Synechococcus sp. WH 5701 GN=WH5701_04020 PE=4 SV=1
Length = 208

Score = 98.2 bits (243), Expect = 4e-19
Identities = 51/114 (44%), Positives = 69/114 (60%), Gaps = 1/114 (0%)
Frame = +1

Query: 268 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXXS-AEELPDGKLAVEFDIKSLYIPAVEWRTT 444
+++ TL GC L IA YP F Y+A + DG+ + F L IP ++WR+T
Sbjct: 9 LQLSTLAGCGLAIAGYPRFRYDARGGGGSAQLGQPSGDGRRPLRFQPDGLSIPPLDWRST 68

Query: 445 KFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVV 606
+ LGLPLPP L I + P+ L+G ++ A G + L F A FLF VGSLY APPL+V
Sbjct: 69 RVLGLPLPPGLSISIEPEQLEGVLDPATGSLALTFRARFLFRVGSLYCAPPLLV 122