DK960268 |
Clone id |
TST39A01NGRL0006_P07 |
Library |
TST39 |
Length |
660 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_P07. 5' end sequence. |
Accession |
DK960268 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL975Contig1 |
Sequence |
GCTTCATCCCAGCCTGCTATGGCAGCTTCTCAGCTGCACTCATCATTTTCACCTTGCATT CGGCAGCAAACACAGAAGATTGTGCGGGAGAAGCAAGGTGTGACATTTTCGCTGGCCACT CGACAAGGGCTTGCCTTTCCTGTACGTGTTTCCAGTGGCCCTCTTTACGCCATGGCAGCC TCTACTCTGCAGCAACAGGTTGAGGTTTGTGAGAAGCAAGAGGTCCTTGAAAAGGAAGAG CAGGCATCAGGAGCTCAATTGTCTAGGATTGAAATTCGAACTCTACGGGGCTGCAGGCTC GGAATCGCCATGTATCCTGACTTTGTTTATAATGCAGAGGGAGGTGGAGGTCCTGGAAGT GCAGAGGAGCTTCCTGATGGTAAACTGGCAGTTGAATTCGATATCAAGAGTCTTTACATT CCGGCTGTGGAATGGCGGACCACCAAGTTCCTTGGATTGCCATTGCCCCCTTTCCTTTGC ATACAGGTTGTTCCCCAGTCTCTGAAGGGCTTCATCGAGCGGGCCAGAGGAAAGGTGGAG CTGGAGTTCTCAGCCAATTTTTTATTTTCCGTGGGCTCTTTGTATCGTGCTCCGCCTCTT GTGGTGAACACACTGTTGACAACCGAAACAACCGAAGGCCGACTTCGAATGGGGCAGGGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9ULX3 |
Definition |
sp|Q9ULX3|NOB1_HUMAN RNA-binding protein NOB1 OS=Homo sapiens |
Align length |
46 |
Score (bit) |
35.8 |
E-value |
0.21 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q6EP75 |
Definition |
tr|Q6EP75|Q6EP75_ORYSJ Os02g0677600 protein OS=Oryza sativa subsp. japonica |
Align length |
135 |
Score (bit) |
131.0 |
E-value |
3.0e-29 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960268|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0006_P07, 5' (660 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q6EP75|Q6EP75_ORYSJ Os02g0677600 protein OS=Oryza sativa subs... 131 3e-29 tr|A2X8A0|A2X8A0_ORYSI Putative uncharacterized protein OS=Oryza... 131 3e-29 tr|A9PEN1|A9PEN1_POPTR Putative uncharacterized protein OS=Popul... 129 2e-28 tr|B6U3W9|B6U3W9_MAIZE Putative uncharacterized protein OS=Zea m... 127 8e-28 tr|A7QVM0|A7QVM0_VITVI Chromosome chr16 scaffold_189, whole geno... 125 2e-27 tr|A9S6Y3|A9S6Y3_PHYPA Predicted protein OS=Physcomitrella paten... 124 5e-27 tr|A9T1A6|A9T1A6_PHYPA Predicted protein (Fragment) OS=Physcomit... 117 8e-25 tr|A9TYZ3|A9TYZ3_PHYPA Predicted protein OS=Physcomitrella paten... 116 1e-24 tr|Q9FIS4|Q9FIS4_ARATH Arabidopsis thaliana genomic DNA, chromos... 100 6e-20 tr|A3YTP4|A3YTP4_9SYNE Putative uncharacterized protein OS=Synec... 98 4e-19 tr|A2BZJ7|A2BZJ7_PROM1 Putative uncharacterized protein OS=Proch... 93 2e-17 tr|A2CAI5|A2CAI5_PROM3 Putative uncharacterized protein OS=Proch... 92 3e-17 tr|Q7V858|Q7V858_PROMM Putative uncharacterized protein MTG10.17... 92 4e-17 tr|Q56YA7|Q56YA7_ARATH Putative uncharacterized protein At5g6214... 89 3e-16 tr|A8HPS9|A8HPS9_CHLRE Putative uncharacterized protein OS=Chlam... 89 3e-16 tr|Q46HZ5|Q46HZ5_PROMT Putative uncharacterized protein OS=Proch... 87 7e-16 tr|A9BBB2|A9BBB2_PROM4 Putative uncharacterized protein OS=Proch... 86 2e-15 tr|B5IJQ2|B5IJQ2_9CHRO Putative uncharacterized protein OS=Cyano... 84 8e-15 tr|Q7VAI6|Q7VAI6_PROMA Uncharacterized conserved protein OS=Proc... 63 2e-08 tr|A8I1H0|A8I1H0_CHLRE Predicted protein (Fragment) OS=Chlamydom... 39 0.37 tr|B2RAR2|B2RAR2_HUMAN cDNA, FLJ95064, highly similar to Homo sa... 36 2.4 tr|Q8S0M1|Q8S0M1_ORYSJ Receptor protein kinase-like OS=Oryza sat... 34 7.1 tr|Q0JH06|Q0JH06_ORYSJ Os01g0892200 protein OS=Oryza sativa subs... 34 7.1 tr|A3A0F6|A3A0F6_ORYSJ Putative uncharacterized protein OS=Oryza... 34 7.1 tr|A2WXU9|A2WXU9_ORYSI Putative uncharacterized protein OS=Oryza... 34 7.1
>tr|Q6EP75|Q6EP75_ORYSJ Os02g0677600 protein OS=Oryza sativa subsp. japonica GN=P0135D07.45 PE=2 SV=1 Length = 256
Score = 131 bits (330), Expect = 3e-29 Identities = 68/135 (50%), Positives = 88/135 (65%), Gaps = 4/135 (2%) Frame = +1
Query: 268 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXX----SAEELPDGKLAVEFDIKSLYIPAVEW 435 +E RT GCRLGI+ YPDF YNA+ S E+ G + VEFD+ SLYIPA+ Sbjct: 75 VEFRTRDGCRLGISRYPDFAYNAQGGRGVGVVASSGED--SGTVLVEFDVSSLYIPAMSG 132
Query: 436 RTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNXX 615 TTKFLGLPLPPFL I ++P++L+G I+ G+V+L+F + F FSVGS+YRAPPL V+ Sbjct: 133 ATTKFLGLPLPPFLKIDILPEALRGNIDPTSGQVDLKFRSRFCFSVGSIYRAPPLFVDTT 192
Query: 616 XXXXXXXGRLRMGQG 660 G +R G G Sbjct: 193 LTSEESSGAIRRGTG 207
>tr|A2X8A0|A2X8A0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_08458 PE=4 SV=1 Length = 256
Score = 131 bits (330), Expect = 3e-29 Identities = 68/135 (50%), Positives = 88/135 (65%), Gaps = 4/135 (2%) Frame = +1
Query: 268 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXX----SAEELPDGKLAVEFDIKSLYIPAVEW 435 +E RT GCRLGI+ YPDF YNA+ S E+ G + VEFD+ SLYIPA+ Sbjct: 75 VEFRTRDGCRLGISRYPDFAYNAQGGRGVGVVASSGED--SGTVLVEFDVSSLYIPAMSG 132
Query: 436 RTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNXX 615 TTKFLGLPLPPFL I ++P++L+G I+ G+V+L+F + F FSVGS+YRAPPL V+ Sbjct: 133 ATTKFLGLPLPPFLKIDILPEALRGNIDPTSGQVDLKFRSRFCFSVGSIYRAPPLFVDTT 192
Query: 616 XXXXXXXGRLRMGQG 660 G +R G G Sbjct: 193 LTSEESSGAIRRGTG 207
>tr|A9PEN1|A9PEN1_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 237
Score = 129 bits (323), Expect = 2e-28 Identities = 65/135 (48%), Positives = 87/135 (64%), Gaps = 4/135 (2%) Frame = +1
Query: 268 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXXSAEELPDGK----LAVEFDIKSLYIPAVEW 435 + +TL GC+LGI+ YPDF YNA+ + + D ++V FD+K+LYIP + Sbjct: 54 VNFKTLGGCKLGISRYPDFEYNAQGGTGTGTCTKAKDSSDLNTVSVSFDMKTLYIPPLTS 113
Query: 436 RTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNXX 615 TTKFLGLPLPPFL I +VP+ +G I++ GKV+LEF A F FSVG++YRAPPL+V Sbjct: 114 GTTKFLGLPLPPFLKIDMVPELFQGTIDQDSGKVDLEFMAKFWFSVGTIYRAPPLLVKTR 173
Query: 616 XXXXXXXGRLRMGQG 660 G +R GQG Sbjct: 174 LTSEESTGTIRSGQG 188
>tr|B6U3W9|B6U3W9_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 270
Score = 127 bits (318), Expect = 8e-28 Identities = 65/137 (47%), Positives = 86/137 (62%), Gaps = 6/137 (4%) Frame = +1
Query: 268 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXX------SAEELPDGKLAVEFDIKSLYIPAV 429 +E RT GCRLGIA YPDF YNA+ S E+ G + V+FD+ +LYIP + Sbjct: 85 VEFRTRDGCRLGIARYPDFAYNAQGGRGVGAGRGSKSGEDDGIGTVLVDFDVATLYIPPM 144
Query: 430 EWRTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVN 609 TT+FLGLPLPP+L I ++P++L G I+RA G V+L+F + F FSVGS+Y+APPL V Sbjct: 145 SGATTRFLGLPLPPYLKIDILPEALGGTIDRATGHVDLKFRSRFCFSVGSVYKAPPLFVE 204
Query: 610 XXXXXXXXXGRLRMGQG 660 G +R G G Sbjct: 205 TTLTSEESRGAIRSGTG 221
>tr|A7QVM0|A7QVM0_VITVI Chromosome chr16 scaffold_189, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00007419001 PE=4 SV=1 Length = 240
Score = 125 bits (314), Expect = 2e-27 Identities = 67/137 (48%), Positives = 88/137 (64%), Gaps = 6/137 (4%) Frame = +1
Query: 268 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXXS--AEELPDGKL----AVEFDIKSLYIPAV 429 ++ RTL C+LGI+ YPDF YNAE + A + D L +V FD+K+LYIP + Sbjct: 56 VKFRTLGACKLGISRYPDFEYNAEGGTGTGTGTAPVVEDNGLKDQVSVCFDLKTLYIPPL 115
Query: 430 EWRTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVN 609 T++FLGLP PPFL I +VP+ +G I R GKV+LEF A FLFSVG++YRAPPL+V Sbjct: 116 TTATSRFLGLPFPPFLRIDIVPELFQGNISRESGKVDLEFKAKFLFSVGNIYRAPPLMVA 175
Query: 610 XXXXXXXXXGRLRMGQG 660 GR+R G+G Sbjct: 176 TVLTSEESEGRMRRGRG 192
>tr|A9S6Y3|A9S6Y3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_163179 PE=4 SV=1 Length = 263
Score = 124 bits (311), Expect = 5e-27 Identities = 61/129 (47%), Positives = 81/129 (62%) Frame = +1
Query: 274 IRTLRGCRLGIAMYPDFVYNAEXXXXXXSAEELPDGKLAVEFDIKSLYIPAVEWRTTKFL 453 +RT +GC LG++ YPDFVYNAE A ++ DG+ +V+FD + IP V +RTT L Sbjct: 88 LRTTKGCGLGVSRYPDFVYNAEGGGGRGKAVKMEDGRWSVKFDAAEVNIPDVGFRTTTLL 147
Query: 454 GLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNXXXXXXXX 633 G+PLPP + I++VP+ L+G ++R GKVEL F A F FS G LYR PL+V Sbjct: 148 GIPLPPPIKIEIVPEFLEGIVDRDTGKVELNFLAKFFFSTGPLYRPSPLIVETLLTTEKA 207
Query: 634 XGRLRMGQG 660 G LR G G Sbjct: 208 QGELRGGTG 216
>tr|A9T1A6|A9T1A6_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_138615 PE=4 SV=1 Length = 179
Score = 117 bits (292), Expect = 8e-25 Identities = 57/131 (43%), Positives = 78/131 (59%) Frame = +1
Query: 268 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXXSAEELPDGKLAVEFDIKSLYIPAVEWRTTK 447 +E+RT +GC LG++ YPDFVY+AE A +L DG+ V FD L+IP V +RT Sbjct: 2 VELRTTKGCGLGVSRYPDFVYDAEGGGGSGKAVKLSDGRWRVHFDAAELHIPDVSFRTAT 61
Query: 448 FLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNXXXXXX 627 LG+P+PP + I++V SL+G ++R GK+EL F + F FS Y PPLVV+ Sbjct: 62 LLGVPIPPPIRIEIVTDSLEGTVDRDIGKIELRFQSRFYFSATRFYEPPPLVVDTVLTTE 121
Query: 628 XXXGRLRMGQG 660 G R G G Sbjct: 122 TTYGEFRGGAG 132
>tr|A9TYZ3|A9TYZ3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_172769 PE=4 SV=1 Length = 266
Score = 116 bits (290), Expect = 1e-24 Identities = 58/131 (44%), Positives = 79/131 (60%) Frame = +1
Query: 268 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXXSAEELPDGKLAVEFDIKSLYIPAVEWRTTK 447 + +RT +GC LGI++YPDFVYNAE A +L DG V+FD + IP V +RTTK Sbjct: 87 VVLRTTKGCGLGISVYPDFVYNAEGGGGSGKAVKLSDGCWRVQFDATEINIPDVSFRTTK 146
Query: 448 FLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNXXXXXX 627 L +P+PP + I++VP +L+G ++ GK+ L F + F FS LYR PPLVV+ Sbjct: 147 LLSVPIPPPIRIKIVPDTLEGTVDLETGKIVLRFQSKFYFSATDLYRPPPLVVDTVLTTE 206
Query: 628 XXXGRLRMGQG 660 G R G G Sbjct: 207 DTHGEQRGGTG 217
>tr|Q9FIS4|Q9FIS4_ARATH Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MTG10 (At5g62140) OS=Arabidopsis thaliana GN=At5g62140 PE=2 SV=1 Length = 241
Score = 100 bits (250), Expect = 6e-20 Identities = 56/141 (39%), Positives = 82/141 (58%), Gaps = 7/141 (4%) Frame = +1
Query: 259 LSRIEIRTLRGCRLGIAMYPDFVYNAEXXXXXXSAEELPD------GKLAVEFDIKSLYI 420 L + +T+ +LGI+ YPDF Y+ +A+++ D +L+V F++ +LYI Sbjct: 51 LYSVSFKTIGTGKLGISRYPDFEYSPLGGSGAGTAKKIDDKNRASNSELSVCFNVATLYI 110
Query: 421 PAVEWRTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSV-GSLYRAPP 597 P++ +TTKFLG PLPPFL I + P+ +G I + GKVELEF A F F+ G +YRAP Sbjct: 111 PSLTSQTTKFLGFPLPPFLKIDISPEIFQGTINQESGKVELEFMAKFFFTAGGGIYRAPA 170
Query: 598 LVVNXXXXXXXXXGRLRMGQG 660 LVV G + G+G Sbjct: 171 LVVRTVLTTEESIGENKRGKG 191
>tr|A3YTP4|A3YTP4_9SYNE Putative uncharacterized protein OS=Synechococcus sp. WH 5701 GN=WH5701_04020 PE=4 SV=1 Length = 208
Score = 98.2 bits (243), Expect = 4e-19 Identities = 51/114 (44%), Positives = 69/114 (60%), Gaps = 1/114 (0%) Frame = +1
Query: 268 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXXS-AEELPDGKLAVEFDIKSLYIPAVEWRTT 444 +++ TL GC L IA YP F Y+A + DG+ + F L IP ++WR+T Sbjct: 9 LQLSTLAGCGLAIAGYPRFRYDARGGGGSAQLGQPSGDGRRPLRFQPDGLSIPPLDWRST 68
Query: 445 KFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVV 606 + LGLPLPP L I + P+ L+G ++ A G + L F A FLF VGSLY APPL+V Sbjct: 69 RVLGLPLPPGLSISIEPEQLEGVLDPATGSLALTFRARFLFRVGSLYCAPPLLV 122
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