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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960269
Clone id TST39A01NGRL0006_P08
Library
Length 649
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_P08. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CGAGCACTTTGAAGGAAGCAGAGAGAAGGAGAGGGGGCCCGAGAGGGAGAAGCTCGTGTT
TGTTTGCAGAAATGGCTGCCATGCAGGCGACATTGGGCGTTTCCTGCCCTTCTTCGTCTC
TATGCAAGTCGTCTTTCTTGGGGAGCGCCTCTCGTCTTTCTCGGGTGGCCTCTGCTATTG
CCCCTTCCCCTGTCCGTGCCTTCAAGGTCGAGGCAAAGAAAGGCGAATGGCTTCCCGGTC
TGGCATCCCCTGCTTACCTAGACGGAAACCTTGCTGGTGACAATGGCTTCGACCCCCTTG
GCTTGGCTGAGGATCCTGCCAACCTTAAATGGTATGTGCAAGCAGAGCTTCAAAATGGAA
GATGGGCAATGCTTGGAGTAGCTGGCATGTTGATCCCCGACCTCTTGACAAAGATTGGTA
TCATCAATGTTCCTGCATGGTATGATGCGGGCAAGGTCGAGTACTTCGCCCCCGCCTCCA
CTCTCTTTGTGATCGAATTCATCTTGTTCCACTATGTGGAGGTGAGAAGATGGCAAGACA
TCAAGTACCCTGGCAGTGTGAATGCCGATCCGTTCAACCCTAAGCTTACTCTGCCCCCTG
GCGAGGTTGGATACCCTGGAGGCATCTTCAACCCCTTCAATTTCCCTAC
■■Homology search results ■■ -
sp_hit_id P27521
Definition sp|P27521|CB24_ARATH Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana
Align length 149
Score (bit) 263.0
E-value 8.0e-70
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960269|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_P08, 5'
         (649 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P27521|CB24_ARATH Chlorophyll a-b binding protein 4, chloropl...   263   8e-70
sp|Q9SQL2|CB24_PEA Chlorophyll a-b binding protein P4, chloropla...   256   5e-68
sp|Q36718|CB120_HORVU Chlorophyll a-b binding protein 1B-20, chl...   195   2e-49
sp|P13869|CB12_PETHY Chlorophyll a-b binding protein, chloroplas...   174   3e-43
sp|P10708|CB12_SOLLC Chlorophyll a-b binding protein 7, chloropl...   169   9e-42
sp|P27522|CB13_SOLLC Chlorophyll a-b binding protein 8, chloropl...   102   1e-21
sp|P27524|CB4A_SOLLC Chlorophyll a-b binding protein CP24 10A, c...   101   4e-21
sp|P36494|CB4_SPIOL Chlorophyll a-b binding protein CP24, chloro...   100   1e-20
sp|Q32904|CB23_PEA Chlorophyll a-b binding protein 3, chloroplas...    98   3e-20
sp|P27525|CB4B_SOLLC Chlorophyll a-b binding protein CP24 10B, c...    92   2e-18
sp|P12360|CB11_SOLLC Chlorophyll a-b binding protein 6A, chlorop...    86   1e-16
sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21, chl...    83   1e-15
sp|Q9XF89|CB26_ARATH Chlorophyll a-b binding protein CP26, chlor...    71   4e-12
sp|P08976|LH18_EUGGR Light-harvesting complex I LH38 proteins (F...    66   1e-10
sp|P14273|CB2_CHLRE Chlorophyll a-b binding protein of LHCII typ...    66   2e-10
sp|P22686|CB2_CHLMO Chlorophyll a-b binding protein of LHCII typ...    65   4e-10
sp|P20866|CB2_PHYPA Chlorophyll a-b binding protein, chloroplast...    63   2e-09
sp|P27517|CB2_DUNTE Chlorophyll a-b binding protein of LHCII typ...    62   3e-09
sp|P08975|LH15_EUGGR Light-harvesting complex I LH35 proteins (F...    61   6e-09
sp|Q10HD0|CB23_ORYSJ Chlorophyll a-b binding protein, chloroplas...    60   1e-08
sp|A2XJ35|CB23_ORYSI Chlorophyll a-b binding protein, chloroplas...    60   1e-08
sp|P08963|CB22_HORVU Chlorophyll a-b binding protein 2, chloropl...    59   2e-08
sp|P27490|CB28_PEA Chlorophyll a-b binding protein 8, chloroplas...    59   2e-08
sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 memb...    59   2e-08
sp|P07371|CB22_PEA Chlorophyll a-b binding protein AB80, chlorop...    59   2e-08
sp|P12328|CB21_LEMGI Chlorophyll a-b binding protein of LHCII ty...    59   2e-08
sp|P27523|CB23_HORVU Chlorophyll a-b binding protein of LHCII ty...    59   3e-08
sp|P04778|CB22_ARATH Chlorophyll a-b binding protein 2, chloropl...    59   3e-08
sp|P04159|CB21_PEA Chlorophyll a-b binding protein AB96 (Fragmen...    59   3e-08
sp|P04777|CB21_ARATH Chlorophyll a-b binding protein 165/180, ch...    59   3e-08

>sp|P27521|CB24_ARATH Chlorophyll a-b binding protein 4,
           chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1
          Length = 251

 Score =  263 bits (671), Expect = 8e-70
 Identities = 122/149 (81%), Positives = 133/149 (89%)
 Frame = +3

Query: 198 AFKVEAKKGEWLPGLASPAYLDGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRWAMLG 377
           +FKVEAKKGEWLPGLASP YL G+LAGDNGFDPLGLAEDP NLKW+VQAEL NGRWAMLG
Sbjct: 47  SFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLG 106

Query: 378 VAGMLIPDLLTKIGIINVPAWYDAGKVEYFAPASTLFVIEFILFHYVEVRRWQDIKYPGS 557
           VAGML+P++ TKIGIINVP WYDAGK +YFA +STLFVIEFILFHYVE+RRWQDIK PGS
Sbjct: 107 VAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGS 166

Query: 558 VNADPFNPKLTLPPGEVGYPGGIFNPFNF 644
           VN DP   + +LP GEVGYPGGIFNP NF
Sbjct: 167 VNQDPIFKQYSLPKGEVGYPGGIFNPLNF 195


>sp|Q9SQL2|CB24_PEA Chlorophyll a-b binding protein P4,
           chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1
          Length = 252

 Score =  256 bits (655), Expect = 5e-68
 Identities = 120/153 (78%), Positives = 131/153 (85%)
 Frame = +3

Query: 186 SPVRAFKVEAKKGEWLPGLASPAYLDGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRW 365
           SP  +FKVEAKKGEWLPGLASP YL G+L GDNGFDPLGLAEDP NL+W+VQAEL NGRW
Sbjct: 42  SPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRW 101

Query: 366 AMLGVAGMLIPDLLTKIGIINVPAWYDAGKVEYFAPASTLFVIEFILFHYVEVRRWQDIK 545
           AMLGVAGML+P++ T IGIINVP WY AGK EYFA +STLFVIEFIL HYVE+RRWQDIK
Sbjct: 102 AMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIK 161

Query: 546 YPGSVNADPFNPKLTLPPGEVGYPGGIFNPFNF 644
            PGSVN DP   + +LP GEVGYPGGIFNP NF
Sbjct: 162 NPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNF 194


>sp|Q36718|CB120_HORVU Chlorophyll a-b binding protein 1B-20,
           chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20
           PE=1 SV=1
          Length = 231

 Score =  195 bits (495), Expect = 2e-49
 Identities = 99/163 (60%), Positives = 116/163 (71%), Gaps = 1/163 (0%)
 Frame = +3

Query: 159 SRVASAIAPSPVRAFKVEAKKGEWLPGLASPAYLDGNLAGDNGFDPLGLAEDPANLKWYV 338
           S  AS    S  R   V+AK G WLPGL SPAYLDG+L GDNGFDPL LAEDP +L+W+V
Sbjct: 14  SPAASGSPRSTRRDVAVQAK-GSWLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFV 72

Query: 339 QAELQNGRWAMLGVAGMLIPDLLTKIGIINVPAWYD-AGKVEYFAPASTLFVIEFILFHY 515
           QA++ NGRWAMLGVAGMLIP++LTK G++N P W    GK  YFA +ST   +  +   Y
Sbjct: 73  QADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVH-MSSTY 131

Query: 516 VEVRRWQDIKYPGSVNADPFNPKLTLPPGEVGYPGGIFNPFNF 644
           VE+RRWQDIK PGSVN DP     +LPP E GYPG +FNP NF
Sbjct: 132 VEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRVFNPLNF 174


>sp|P13869|CB12_PETHY Chlorophyll a-b binding protein, chloroplastic
           OS=Petunia hybrida PE=2 SV=1
          Length = 270

 Score =  174 bits (442), Expect = 3e-43
 Identities = 87/167 (52%), Positives = 107/167 (64%), Gaps = 6/167 (3%)
 Frame = +3

Query: 162 RVASAIAPSPVRAFKVEAKKGE-----WLPGLASPAYLDGNLAGDNGFDPLGLAEDPANL 326
           RV+  IAP   R+  V A   +     W PG   P +LDG+L GD GFDPLGL  DP +L
Sbjct: 41  RVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESL 100

Query: 327 KWYVQAELQNGRWAMLGVAGMLIPDLLTKIGIINVPAWYDAGKVEYFAPASTLFVIEFIL 506
           KW  QAEL + RWAMLG AG+ IP+ LTKIG++N P+WY AG+ EYF   +TLFVIE +L
Sbjct: 101 KWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVL 160

Query: 507 FHYVEVRRWQDIKYPGSVNADPFNPKLTLPPGEVGYPGGI-FNPFNF 644
             + E RRW DI  PG VN DP  P   L   +VGYPGG+ F+P  +
Sbjct: 161 IGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 207



 Score = 33.9 bits (76), Expect = 0.75
 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 261 DGNLAGDNGFDPLGLAE-DPANLKWYVQAELQNGRWAMLGVAGMLIPDLLTKIGIIN 428
           D    G   FDPLG     PA +K     E++NGR AML V G     + T  G I+
Sbjct: 193 DVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 249


>sp|P10708|CB12_SOLLC Chlorophyll a-b binding protein 7,
           chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1
          Length = 270

 Score =  169 bits (429), Expect = 9e-42
 Identities = 79/140 (56%), Positives = 98/140 (70%), Gaps = 1/140 (0%)
 Frame = +3

Query: 228 WLPGLASPAYLDGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRWAMLGVAGMLIPDLL 407
           W PG   P +LDG+L GD GFDPLGLA DP +L+W  QAEL + RWAMLG AG+ IP+LL
Sbjct: 68  WFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELL 127

Query: 408 TKIGIINVPAWYDAGKVEYFAPASTLFVIEFILFHYVEVRRWQDIKYPGSVNADPFNPKL 587
           TKIGI+N P+WY AG+ EYF   +TLF++E +L  + E RRW DI  PG VN DP  P  
Sbjct: 128 TKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNN 187

Query: 588 TLPPGEVGYPGGI-FNPFNF 644
            L   +VGYPGG+ F+P  +
Sbjct: 188 KLTGTDVGYPGGLWFDPLGW 207



 Score = 33.9 bits (76), Expect = 0.75
 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 261 DGNLAGDNGFDPLGLAE-DPANLKWYVQAELQNGRWAMLGVAGMLIPDLLTKIGIIN 428
           D    G   FDPLG     PA +K     E++NGR AML V G     + T  G I+
Sbjct: 193 DVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 249


>sp|P27522|CB13_SOLLC Chlorophyll a-b binding protein 8,
           chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1
          Length = 273

 Score =  102 bits (255), Expect = 1e-21
 Identities = 73/182 (40%), Positives = 92/182 (50%), Gaps = 18/182 (9%)
 Frame = +3

Query: 153 RLSRVASAIAPSPVRAFKVEAKKGEWLPGLASPAYLDGNLAGDNGFDPLGLAEDPANL-- 326
           + S V  A +  PV   K  A +  W     S +YLDG L GD GFDPLGL+ DP     
Sbjct: 34  KASFVVRAASTPPV---KQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGG 89

Query: 327 ----KWYVQAELQNGRWAMLGVAGMLIPDLLTKIGII---NVPAWYD------AGKVEYF 467
               KW    E+ NGR+AMLG AG + P++L K G+I      AW+       AG   Y+
Sbjct: 90  FIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYW 149

Query: 468 APASTLFVIEFILFHYVEVRRWQDIKYPGSVNADPF--NPKLTLPPGEVGYPGG-IFNPF 638
           A   TLFV+E  L  + E RR+QD   PGS+    F    K     G+  YPGG +FNP 
Sbjct: 150 ADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPL 209

Query: 639 NF 644
            F
Sbjct: 210 GF 211



 Score = 43.5 bits (101), Expect = 0.001
 Identities = 25/63 (39%), Positives = 34/63 (53%)
 Frame = +3

Query: 231 LPGLASPAYLDGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRWAMLGVAGMLIPDLLT 410
           L G   PAY  G L     F+PLG  +D  ++K     E++NGR AML + G  I  L+T
Sbjct: 192 LGGSGDPAYPGGPL-----FNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVT 246

Query: 411 KIG 419
            +G
Sbjct: 247 GVG 249


>sp|P27524|CB4A_SOLLC Chlorophyll a-b binding protein CP24 10A,
           chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3
           SV=1
          Length = 256

 Score =  101 bits (251), Expect = 4e-21
 Identities = 68/172 (39%), Positives = 85/172 (49%), Gaps = 15/172 (8%)
 Frame = +3

Query: 159 SRVASAIAPSPVRAFKVEAKKGEWLPG------LASPAYLDGNLAGDNGFDPLGLAEDPA 320
           +RV  A  P         AKK  W+P       L  P +LDG+L GD GFDPLGL +DPA
Sbjct: 33  ARVGGAATPKRFTVLAAAAKKS-WIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPA 91

Query: 321 NLKWYVQAELQNGRWAMLGVAGMLIPDLLTKIGIINVPAWYDAG-KVEYFAPAS--TLFV 491
            LKWY +AEL +GRWAM  V G+ +    + I       W++AG      AP S  TL  
Sbjct: 92  FLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFSFGTLLG 145

Query: 492 IEFILFHYVEVRRWQDIKYPGSVNADPFNP------KLTLPPGEVGYPGGIF 629
            + IL  +VE +RW D   P S + +   P            GE GYPGG F
Sbjct: 146 TQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKF 197


>sp|P36494|CB4_SPIOL Chlorophyll a-b binding protein CP24,
           chloroplastic OS=Spinacia oleracea PE=2 SV=1
          Length = 261

 Score = 99.8 bits (247), Expect = 1e-20
 Identities = 63/151 (41%), Positives = 80/151 (52%), Gaps = 12/151 (7%)
 Frame = +3

Query: 213 AKKGEWLPGLAS------PAYLDGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRWAML 374
           A K  W+P +        P +LDG+L GD GFDPLGL +DPA LKWY +AEL +GRWAML
Sbjct: 55  APKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAML 114

Query: 375 GVAGMLIPDLLTKIGIINVPAWYDAGKVEYFAPASTLFVIEFILFHYVEVRRWQDIKYPG 554
            V G+ +    T  GI    A  D G V  F+   TL   + +L  +VE +RW D   P 
Sbjct: 115 AVLGIFVGQAWT--GIPWFEAGADPGAVAPFS-FGTLLGTQLLLMGWVESKRWVDFFDPD 171

Query: 555 SVNADPFNP------KLTLPPGEVGYPGGIF 629
           S + +   P        +   GE GYPGG F
Sbjct: 172 SQSVEWATPWSRTAENFSNSTGEQGYPGGKF 202


>sp|Q32904|CB23_PEA Chlorophyll a-b binding protein 3, chloroplastic
           OS=Pisum sativum GN=lhca3 PE=1 SV=1
          Length = 275

 Score = 98.2 bits (243), Expect = 3e-20
 Identities = 71/178 (39%), Positives = 90/178 (50%), Gaps = 21/178 (11%)
 Frame = +3

Query: 174 AIAPSPVRAFKVEAKKGEWLPGLASPAYLDGNLAGDNGFDPLGLAEDPANL------KWY 335
           A A  PV+   V+  +  W     S +YLDG+L GD GFDPLGL+ DP         +W 
Sbjct: 42  AAATPPVKQGGVD--RPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWL 98

Query: 336 VQAELQNGRWAMLGVAGMLIPDLLTKIGII---NVPAWYD------AGKVEYFAPASTLF 488
              E+ NGR+AMLG  G + P+ L K+G+I      AW+       AG   Y+A   TLF
Sbjct: 99  AYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLF 158

Query: 489 VIEFILFHYVEVRRWQDIKYPGSVNADPFNPKLTLPPGEVG-----YPGG-IFNPFNF 644
           V+E  L  + E RR+QD   PGS+    F   L L  G  G     YPGG  FNP  F
Sbjct: 159 VLEMALMGFAEHRRFQDWAKPGSMGKQYF---LGLEKGFGGSGNPAYPGGPFFNPLGF 213



 Score = 42.4 bits (98), Expect = 0.002
 Identities = 24/61 (39%), Positives = 33/61 (54%)
 Frame = +3

Query: 237 GLASPAYLDGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRWAMLGVAGMLIPDLLTKI 416
           G  +PAY  G       F+PLG  +D  +LK     E++NGR AML + G  I  L+T +
Sbjct: 196 GSGNPAYPGGPF-----FNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGV 250

Query: 417 G 419
           G
Sbjct: 251 G 251


>sp|P27525|CB4B_SOLLC Chlorophyll a-b binding protein CP24 10B,
           chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3
           SV=1
          Length = 256

 Score = 92.4 bits (228), Expect = 2e-18
 Identities = 61/154 (39%), Positives = 79/154 (51%), Gaps = 15/154 (9%)
 Frame = +3

Query: 213 AKKGEWLPGLAS------PAYLDGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRWAML 374
           A K  W+P + S      P +LDG+L GD GFDPLGL +DPA LKWY +AEL +GRWAM 
Sbjct: 50  APKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMA 109

Query: 375 GVAGMLIPDLLTKIGIINVPAWYDAG-KVEYFAPAS--TLFVIEFILFHYVEVRRWQDIK 545
            V G+ +    + I       W++AG      AP S  +L   + +L  +VE +RW D  
Sbjct: 110 AVLGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFF 163

Query: 546 YPGSVNADPFNP------KLTLPPGEVGYPGGIF 629
              S + D   P            GE GYPGG F
Sbjct: 164 DNDSQSIDWATPWSKTAENFANFTGEQGYPGGKF 197
tr_hit_id Q07489
Definition tr|Q07489|Q07489_PINSY Lhca4 protein,Type 4 protein of light-harvesting complex of photosystem I OS=Pinus sylvestris
Align length 188
Score (bit) 271.0
E-value 2.0e-71
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960269|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_P08, 5'
         (649 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q07489|Q07489_PINSY Lhca4 protein,Type 4 protein of light-har...   271   2e-71
tr|Q41039|Q41039_PINSY Lhca4 protein,Type 4 protein of light-har...   270   6e-71
tr|A9NUC5|A9NUC5_PICSI Putative uncharacterized protein OS=Picea...   268   2e-70
tr|A5AEI0|A5AEI0_VITVI Putative uncharacterized protein (Chromos...   266   8e-70
tr|Q8RVI8|Q8RVI8_PINPS Putative chlorophyll a/b-binding protein ...   265   1e-69
tr|B1PDK1|B1PDK1_CAPAN Chloroplast chlorophyll a/b binding prote...   264   3e-69
tr|B7FJY9|B7FJY9_MEDTR Putative uncharacterized protein OS=Medic...   264   4e-69
tr|Q7XAC6|Q7XAC6_BETVU Chlorophyll a /b binding protein OS=Beta ...   261   3e-68
tr|Q7M1K8|Q7M1K8_SOLLC Chlorophyll a/b-binding protein (cab-12) ...   258   2e-67
tr|Q1H8L9|Q1H8L9_SOLTU Chlorophyll a/b binding protein OS=Solanu...   258   2e-67
tr|A9PIX4|A9PIX4_POPJC Putative uncharacterized protein OS=Popul...   257   5e-67
tr|Q7M1K9|Q7M1K9_SOLLC Chlorophyll a/b-binding protein (cab-11) ...   256   6e-67
tr|B6SZR1|B6SZR1_MAIZE Chlorophyll a-b binding protein 4 OS=Zea ...   253   7e-66
tr|B4FV94|B4FV94_MAIZE Chlorophyll a-b binding protein 4 OS=Zea ...   250   5e-65
tr|B6TNZ8|B6TNZ8_MAIZE Chlorophyll a-b binding protein 4 OS=Zea ...   248   2e-64
tr|B6TFT2|B6TFT2_MAIZE Chlorophyll a-b binding protein 4 OS=Zea ...   246   7e-64
tr|B8LS59|B8LS59_BAMOL Photosystem I light-harvesting complex ty...   245   1e-63
tr|Q6YWJ7|Q6YWJ7_ORYSJ Os08g0435900 protein OS=Oryza sativa subs...   241   2e-62
tr|A2YVJ1|A2YVJ1_ORYSI Putative uncharacterized protein OS=Oryza...   241   2e-62
tr|Q40481|Q40481_TOBAC Light-harvesting chlorophyll a /b binding...   240   5e-62
tr|Q9LKC7|Q9LKC7_HORVU Chlorophyll a/b-binding protein (Fragment...   239   8e-62
tr|A2YVI8|A2YVI8_ORYSI Putative uncharacterized protein OS=Oryza...   238   2e-61
tr|Q9ZSU1|Q9ZSU1_ORYSA Chlorophyll a/b-binding protein presursor...   235   2e-60
tr|Q6SYB3|Q6SYB3_ORYSJ Chlorophyll a/b binding protein presusor ...   232   2e-59
tr|B6DYZ9|B6DYZ9_LIQST Chloroplast chlorophyll a-b binding prote...   214   4e-54
tr|B6DZ35|B6DZ35_9MAGN Chloroplast chlorophyll a-b binding prote...   213   8e-54
tr|B6DZ24|B6DZ24_9MAGN Chloroplast chlorophyll a-b binding prote...   213   1e-53
tr|B6DZ20|B6DZ20_9MAGN Chloroplast chlorophyll a-b binding prote...   213   1e-53
tr|B6DZ12|B6DZ12_9MAGN Chloroplast chlorophyll a-b binding prote...   213   1e-53
tr|B6DYZ6|B6DYZ6_LIQFO Chloroplast chlorophyll a-b binding prote...   213   1e-53

>tr|Q07489|Q07489_PINSY Lhca4 protein,Type 4 protein of
           light-harvesting complex of photosystem I OS=Pinus
           sylvestris GN=Lhca4*1-1 PE=2 SV=1
          Length = 251

 Score =  271 bits (694), Expect = 2e-71
 Identities = 134/188 (71%), Positives = 149/188 (79%), Gaps = 1/188 (0%)
 Frame = +3

Query: 84  QATLGVXXXXXXXXXXXXXXXXXRLSR-VASAIAPSPVRAFKVEAKKGEWLPGLASPAYL 260
           QA LGV                 RL+R V     P+P R+FKVEAK GEWLPGL+SP+YL
Sbjct: 7   QAALGVSCPSVCRSAFLTGSSVSRLARRVRPGSNPAPARSFKVEAK-GEWLPGLSSPSYL 65

Query: 261 DGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRWAMLGVAGMLIPDLLTKIGIINVPAW 440
           +G+L GDNGFDPLGLAEDP +LKWYVQAEL NGRWAMLGVAGMLIP++LT IG+INVP W
Sbjct: 66  NGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLINVPKW 125

Query: 441 YDAGKVEYFAPASTLFVIEFILFHYVEVRRWQDIKYPGSVNADPFNPKLTLPPGEVGYPG 620
           YDAGKVEYFA +STLFVIEFILFHYVE+RRWQDIKYPGSVN DP   + +LPP EVGYPG
Sbjct: 126 YDAGKVEYFASSSTLFVIEFILFHYVELRRWQDIKYPGSVNQDPLFKQYSLPPNEVGYPG 185

Query: 621 GIFNPFNF 644
           GIFNP NF
Sbjct: 186 GIFNPLNF 193


>tr|Q41039|Q41039_PINSY Lhca4 protein,Type 4 protein of
           light-harvesting complex of photosystem I (Fragment)
           OS=Pinus sylvestris GN=Lhca4*1-2 PE=2 SV=1
          Length = 244

 Score =  270 bits (690), Expect = 6e-71
 Identities = 127/161 (78%), Positives = 141/161 (87%)
 Frame = +3

Query: 162 RVASAIAPSPVRAFKVEAKKGEWLPGLASPAYLDGNLAGDNGFDPLGLAEDPANLKWYVQ 341
           RV     P+P R+FKVEAK GEWLPGL+SP+YL+G+L GDNGFDPLGLAEDP +LKWYVQ
Sbjct: 27  RVRPGSNPAPARSFKVEAK-GEWLPGLSSPSYLNGSLPGDNGFDPLGLAEDPESLKWYVQ 85

Query: 342 AELQNGRWAMLGVAGMLIPDLLTKIGIINVPAWYDAGKVEYFAPASTLFVIEFILFHYVE 521
           AEL NGRWAMLGVAGMLIP++LT IG+INVP WYDAGKVEYFA +STLFVIEFILFHYVE
Sbjct: 86  AELVNGRWAMLGVAGMLIPEVLTSIGLINVPKWYDAGKVEYFASSSTLFVIEFILFHYVE 145

Query: 522 VRRWQDIKYPGSVNADPFNPKLTLPPGEVGYPGGIFNPFNF 644
           +RRWQDIKYPGSVN DP   + +LPP EVGYPGGIFNP NF
Sbjct: 146 LRRWQDIKYPGSVNQDPLFKQYSLPPNEVGYPGGIFNPLNF 186


>tr|A9NUC5|A9NUC5_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 251

 Score =  268 bits (685), Expect = 2e-70
 Identities = 133/188 (70%), Positives = 146/188 (77%), Gaps = 1/188 (0%)
 Frame = +3

Query: 84  QATLGVXXXXXXXXXXXXXXXXXRLSR-VASAIAPSPVRAFKVEAKKGEWLPGLASPAYL 260
           QATLGV                 RL+R V     P+P R+FKVEAK GEWLPGL+SP YL
Sbjct: 7   QATLGVSCRSVCRSGFLTGSSVSRLARRVRPGSNPAPARSFKVEAK-GEWLPGLSSPTYL 65

Query: 261 DGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRWAMLGVAGMLIPDLLTKIGIINVPAW 440
           +G+L GDNGFDPLGLAEDP +LKWYVQAEL NGRWAMLGVAGMLIP++LT  G I+VP W
Sbjct: 66  NGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFIDVPKW 125

Query: 441 YDAGKVEYFAPASTLFVIEFILFHYVEVRRWQDIKYPGSVNADPFNPKLTLPPGEVGYPG 620
           YDAGKVEYFA +STLFVIEFILFHYVE+RRWQDIKYPGSVN DP     +LPP EVGYPG
Sbjct: 126 YDAGKVEYFASSSTLFVIEFILFHYVELRRWQDIKYPGSVNQDPVFKNYSLPPNEVGYPG 185

Query: 621 GIFNPFNF 644
           GIFNP NF
Sbjct: 186 GIFNPLNF 193


>tr|A5AEI0|A5AEI0_VITVI Putative uncharacterized protein (Chromosome
           chr17 scaffold_12, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00016319001 PE=4 SV=1
          Length = 252

 Score =  266 bits (680), Expect = 8e-70
 Identities = 123/153 (80%), Positives = 133/153 (86%)
 Frame = +3

Query: 186 SPVRAFKVEAKKGEWLPGLASPAYLDGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRW 365
           S  R+FKVEAKKGEWLPGL+SP+YLDG+L GDNGFDPLGLAEDP NLKWYVQAEL N RW
Sbjct: 42  SSYRSFKVEAKKGEWLPGLSSPSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRW 101

Query: 366 AMLGVAGMLIPDLLTKIGIINVPAWYDAGKVEYFAPASTLFVIEFILFHYVEVRRWQDIK 545
           AMLGVAGML+P++ TKIGIIN P WYDAGK EYFA +STLFVIEFILFHYVE+RRWQDIK
Sbjct: 102 AMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIK 161

Query: 546 YPGSVNADPFNPKLTLPPGEVGYPGGIFNPFNF 644
            PGSVN DP     +LPP EVGYPGGIFNP NF
Sbjct: 162 NPGSVNQDPIFKNYSLPPNEVGYPGGIFNPLNF 194


>tr|Q8RVI8|Q8RVI8_PINPS Putative chlorophyll a/b-binding protein
           type 4 OS=Pinus pinaster PE=2 SV=1
          Length = 251

 Score =  265 bits (678), Expect = 1e-69
 Identities = 131/188 (69%), Positives = 145/188 (77%), Gaps = 1/188 (0%)
 Frame = +3

Query: 84  QATLGVXXXXXXXXXXXXXXXXXRLSR-VASAIAPSPVRAFKVEAKKGEWLPGLASPAYL 260
           QA LGV                 RL+R V     P+P R+FKVEAK GEWLPGL+SP+YL
Sbjct: 7   QAALGVSCPSVCRSGFLTGSSVSRLARRVRPGSNPAPARSFKVEAK-GEWLPGLSSPSYL 65

Query: 261 DGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRWAMLGVAGMLIPDLLTKIGIINVPAW 440
           +G+L GDNG DPLGLAEDP +LKWYVQAEL NGRWAMLGVAGM IP++LT IG+INVP W
Sbjct: 66  NGSLPGDNGXDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMXIPEVLTSIGLINVPKW 125

Query: 441 YDAGKVEYFAPASTLFVIEFILFHYVEVRRWQDIKYPGSVNADPFNPKLTLPPGEVGYPG 620
           YDAGKVEYFA + TLFVIEFILFHYVE+RRWQDIKYPGSVN DP     +LPP EVGYPG
Sbjct: 126 YDAGKVEYFASSXTLFVIEFILFHYVELRRWQDIKYPGSVNQDPIXKSYSLPPNEVGYPG 185

Query: 621 GIFNPFNF 644
           GIFNP NF
Sbjct: 186 GIFNPLNF 193


>tr|B1PDK1|B1PDK1_CAPAN Chloroplast chlorophyll a/b binding protein
           OS=Capsicum annuum PE=2 SV=1
          Length = 250

 Score =  264 bits (675), Expect = 3e-69
 Identities = 123/164 (75%), Positives = 136/164 (82%)
 Frame = +3

Query: 153 RLSRVASAIAPSPVRAFKVEAKKGEWLPGLASPAYLDGNLAGDNGFDPLGLAEDPANLKW 332
           +L+R  S    +   +FKVEAKKGEWLPGLASPAYLDG+L GDNGFDPLGLAEDP NLKW
Sbjct: 29  KLNREVSFRPSTSNNSFKVEAKKGEWLPGLASPAYLDGSLPGDNGFDPLGLAEDPENLKW 88

Query: 333 YVQAELQNGRWAMLGVAGMLIPDLLTKIGIINVPAWYDAGKVEYFAPASTLFVIEFILFH 512
           Y+QAEL NGRWAMLGVAGML+P++ T IGI+NVP WYDAGK EYFA +STLFVIEFILFH
Sbjct: 89  YIQAELVNGRWAMLGVAGMLLPEVFTSIGILNVPKWYDAGKAEYFASSSTLFVIEFILFH 148

Query: 513 YVEVRRWQDIKYPGSVNADPFNPKLTLPPGEVGYPGGIFNPFNF 644
           YVE+RRWQDIK PG VN DP     +LPP E GYPGGIFNP NF
Sbjct: 149 YVEIRRWQDIKNPGCVNQDPIFKNYSLPPNECGYPGGIFNPLNF 192


>tr|B7FJY9|B7FJY9_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 253

 Score =  264 bits (674), Expect = 4e-69
 Identities = 123/153 (80%), Positives = 133/153 (86%)
 Frame = +3

Query: 186 SPVRAFKVEAKKGEWLPGLASPAYLDGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRW 365
           SP  +FKVEAKKGEWLPGLASP YL G+L GDNGFDPLGLAEDP NLKW+VQAEL NGRW
Sbjct: 42  SPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRW 101

Query: 366 AMLGVAGMLIPDLLTKIGIINVPAWYDAGKVEYFAPASTLFVIEFILFHYVEVRRWQDIK 545
           AMLGVAGML+P++ T IGIINVP WYDAGK EYFA +STLFVIEFILFHYVE+RRWQDIK
Sbjct: 102 AMLGVAGMLLPEVFTNIGIINVPKWYDAGKEEYFASSSTLFVIEFILFHYVEIRRWQDIK 161

Query: 546 YPGSVNADPFNPKLTLPPGEVGYPGGIFNPFNF 644
            PGSVN DP   + +LP GEVGYPGGIFNP NF
Sbjct: 162 NPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNF 194


>tr|Q7XAC6|Q7XAC6_BETVU Chlorophyll a /b binding protein OS=Beta
           vulgaris GN=cab11 PE=2 SV=1
          Length = 252

 Score =  261 bits (666), Expect = 3e-68
 Identities = 121/153 (79%), Positives = 133/153 (86%)
 Frame = +3

Query: 186 SPVRAFKVEAKKGEWLPGLASPAYLDGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRW 365
           S   + KVEAKKGEWLPGLASPAYL+G+L GDNGFDPL LAEDP NLKW+VQAEL NGRW
Sbjct: 42  SSTNSLKVEAKKGEWLPGLASPAYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRW 101

Query: 366 AMLGVAGMLIPDLLTKIGIINVPAWYDAGKVEYFAPASTLFVIEFILFHYVEVRRWQDIK 545
           AMLGVAGML+P++ T+IGIINVP WYDAGK EYFA +STLFVIEFILFHYVE+RRWQDIK
Sbjct: 102 AMLGVAGMLLPEVFTQIGIINVPKWYDAGKQEYFASSSTLFVIEFILFHYVEIRRWQDIK 161

Query: 546 YPGSVNADPFNPKLTLPPGEVGYPGGIFNPFNF 644
            PGSVN DP   + +LPP EVGYPGGIFNP NF
Sbjct: 162 NPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNF 194


>tr|Q7M1K8|Q7M1K8_SOLLC Chlorophyll a/b-binding protein (cab-12)
           OS=Solanum lycopersicum PE=4 SV=1
          Length = 250

 Score =  258 bits (660), Expect = 2e-67
 Identities = 117/149 (78%), Positives = 131/149 (87%)
 Frame = +3

Query: 198 AFKVEAKKGEWLPGLASPAYLDGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRWAMLG 377
           +FKVEAKKGEWLPGL SP YL+G+LAGDNGFDPLGLAEDP NL+W+VQAEL NGRWAMLG
Sbjct: 45  SFKVEAKKGEWLPGLTSPTYLNGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLG 104

Query: 378 VAGMLIPDLLTKIGIINVPAWYDAGKVEYFAPASTLFVIEFILFHYVEVRRWQDIKYPGS 557
           VAGML+P++ T IG++NVP WYDAGK +YFA +STLFVIEFILFHYVE+RRWQDIK PGS
Sbjct: 105 VAGMLLPEVFTSIGLLNVPKWYDAGKSDYFASSSTLFVIEFILFHYVEIRRWQDIKNPGS 164

Query: 558 VNADPFNPKLTLPPGEVGYPGGIFNPFNF 644
           VN DP     +LPP EVGYPGGIFNP NF
Sbjct: 165 VNQDPIFKSYSLPPNEVGYPGGIFNPLNF 193


>tr|Q1H8L9|Q1H8L9_SOLTU Chlorophyll a/b binding protein OS=Solanum
           tuberosum GN=cab1 PE=2 SV=1
          Length = 251

 Score =  258 bits (659), Expect = 2e-67
 Identities = 118/153 (77%), Positives = 131/153 (85%)
 Frame = +3

Query: 186 SPVRAFKVEAKKGEWLPGLASPAYLDGNLAGDNGFDPLGLAEDPANLKWYVQAELQNGRW 365
           S   +FKVEAKKG+WLPGLASP YLDG+L GDNGFDPLGLAEDP NLKW++QAEL NGRW
Sbjct: 42  SSYNSFKVEAKKGQWLPGLASPDYLDGSLPGDNGFDPLGLAEDPENLKWFIQAELVNGRW 101

Query: 366 AMLGVAGMLIPDLLTKIGIINVPAWYDAGKVEYFAPASTLFVIEFILFHYVEVRRWQDIK 545
           AMLGVAGML+P++ T IGI+NVP WYDAGK EYFA +STLFVIEFILFHYVE+RRWQDIK
Sbjct: 102 AMLGVAGMLLPEVFTSIGILNVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIK 161

Query: 546 YPGSVNADPFNPKLTLPPGEVGYPGGIFNPFNF 644
            PGSVN DP     +LPP + GYPGGIFNP NF
Sbjct: 162 NPGSVNQDPIFKSYSLPPNKCGYPGGIFNPLNF 194