BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960276|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_P15, 5'
         (542 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9VHI4|SF3B5_DROME Probable splicing factor 3B subunit 5 OS=D...    31   3.4  

>sp|Q9VHI4|SF3B5_DROME Probable splicing factor 3B subunit 5
           OS=Drosophila melanogaster GN=CG11985 PE=1 SV=1
          Length = 85

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -3

Query: 504 LHDQRKKKLQTAFCHYEISNYTNSLTQFSAAARIRLNVTTHSWNPCASP 358
           L +Q +  L +   HY+I NY  ++ +  + AR+R N+      PC  P
Sbjct: 32  LTNQHRDSLASYMGHYDILNYF-AIAENESKARVRFNLMERMLQPCGPP 79

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960276|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_P15, 5'
         (542 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0D4K4|A0D4K4_PARTE Chromosome undetermined scaffold_371, who...    34   4.4  
tr|A3BW69|A3BW69_ORYSJ Putative uncharacterized protein OS=Oryza...    34   5.7  
tr|B4IZM7|B4IZM7_DROGR GH17071 OS=Drosophila grimshawi GN=GH1707...    34   5.7  

>tr|A0D4K4|A0D4K4_PARTE Chromosome undetermined scaffold_371, whole
           genome shotgun sequence. (Fragment) OS=Paramecium
           tetraurelia GN=GSPATT00039248001 PE=4 SV=1
          Length = 1905

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
 Frame = +1

Query: 223 IKGRWSSKGEGQRKC---EAKKGNPVFFLTNEN---------KCVLNQFVAGPSQWPWRC 366
           I G W    E  +KC   +    N   +LTNE+          C+L    AG  QWP  C
Sbjct: 473 ISGLWCKWDEYNKKCINQQCTDANVSLYLTNEDCYQFKVLFGPCILRSSGAGCQQWPTDC 532

Query: 367 TR-IPRMSCNIEADSG 411
           T+ + +  C +    G
Sbjct: 533 TQMVSQNQCQLNLYDG 548


>tr|A3BW69|A3BW69_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_027291 PE=4 SV=1
          Length = 230

 Score = 33.9 bits (76), Expect = 5.7
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = +2

Query: 122 DYSHSSNIF*PIWCRNDSSILLQIIRDSCCEKGRSKAGGVARERGKESAKQRKETPFSSS 301
           D SHS +   PI CR ++S +  +  D     GR      +R RG   A+  K+TP  S 
Sbjct: 120 DVSHSRSRPLPIPCRQETSAVQGLDEDPDGNGGRPHPRYRSRSRGTREARSSKKTPRESK 179

Query: 302 RTKTN 316
           R  ++
Sbjct: 180 RLSSS 184


>tr|B4IZM7|B4IZM7_DROGR GH17071 OS=Drosophila grimshawi GN=GH17071
           PE=4 SV=1
          Length = 471

 Score = 33.9 bits (76), Expect = 5.7
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 462 HYEISNYTNSLTQ--FSAAARIRLNVTTHSWNPCASPWPL*GASHKLIQ 322
           H + + Y NS  Q  F   +  RLN    +WN CA  W   GA H L++
Sbjct: 410 HAKNTTYRNSRIQSGFELLSLTRLNCVRWNWNQCARNWIAVGAEHGLLR 458