NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960277
Clone id TST39A01NGRL0006_P16
Library
Length 619
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_P16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GTATCACTGAAGGAAATAACCACAAGAACCACAATTTTTTTTTGCTTGTTGCGGTCGCAC
GTAACCAAGATTTCTTGGGCGTGTCAATTTCTACTCTTGTTTTTGAAGAGTGACAGGAAA
CCCAAGAAAGAAGGGCGCCTTGTGCCTCTTTTCACTCATTGAGAGCGGACCGTGCACTTA
GCGGCTGACAAATCTACGTGAGGTGGGAAAAAGCAACCTTGGTGTGAGCGCAAGGCCGCC
AAGGGGTGCGCCTGCGGAAAAGAGCCGAAATCGGGTGAAGAGAAAATCCTTCTCTAACAC
AGATTGTAAGCGAAAGAAGAACCTTAAGAACCTCAAGAACTCAAGAACCCCGAGAACTAA
CACCCTCAAGAACCTCAAGAACTCAAGACCCAAGATCCACAAGAAACCAAGTTCCTCGTG
AACTTAAGAACCAAAGATCTTAGTGGATGGTCATCACCCGAACCGGAATGGATACTTTGC
ATGAAGGTGATGAGCATGAGGGTGGTGAAGAAGAATTTTCCCCACTAGGAGGTTTTTCCG
TCCCTCCCCTTTCCCCATCTACTCCAAGGATTGCACGAACTCCTATGGAGGAGTTGAAGC
AATTGTGAAAAGGAAGTTA
■■Homology search results ■■ -
sp_hit_id P18583
Definition sp|P18583|SON_HUMAN SON protein OS=Homo sapiens
Align length 68
Score (bit) 35.4
E-value 0.24
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960277|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_P16, 5'
         (619 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P18583|SON_HUMAN SON protein OS=Homo sapiens GN=SON PE=1 SV=3       35   0.24 
sp|Q8S9J8|CAP1_ARATH Putative clathrin assembly protein At4g3228...    35   0.31 
sp|Q9QX47|SON_MOUSE SON protein OS=Mus musculus GN=Son PE=1 SV=1       35   0.40 
sp|Q6FX33|MSC3_CANGA Meiotic sister-chromatid recombination prot...    33   1.5  
sp|P12036|NFH_HUMAN Neurofilament heavy polypeptide OS=Homo sapi...    31   5.9  
sp|A0QHG7|LGT_MYCA1 Prolipoprotein diacylglyceryl transferase OS...    30   7.7  

>sp|P18583|SON_HUMAN SON protein OS=Homo sapiens GN=SON PE=1 SV=3
          Length = 2426

 Score = 35.4 bits (80), Expect = 0.24
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +3

Query: 249  RLRKRAEIG*RENPSLTQIVSERRTLRTSRTQEPRELTPSRTSRTQDPR----STRNQVP 416
            R R+   +G R + S++     R   R SRT   R  TPSR SRT   R    S R++ P
Sbjct: 1936 RRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 1995

Query: 417  RELKNQRS 440
               +  RS
Sbjct: 1996 SRRRRSRS 2003


>sp|Q8S9J8|CAP1_ARATH Putative clathrin assembly protein At4g32285
           OS=Arabidopsis thaliana GN=At4g32285 PE=1 SV=1
          Length = 635

 Score = 35.0 bits (79), Expect = 0.31
 Identities = 24/49 (48%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
 Frame = +1

Query: 316 EEP*EPQELKN---PEN*HPQEPQ--ELKTQDPQETKFLVNLRTKDLSG 447
           EEP +  E+K    PEN  P  P   E K Q PQ T  LVNLR  D+SG
Sbjct: 379 EEPVDMNEIKALPPPENHTPPPPPAPEPKPQQPQVTDDLVNLREDDVSG 427


>sp|Q9QX47|SON_MOUSE SON protein OS=Mus musculus GN=Son PE=1 SV=1
          Length = 2404

 Score = 34.7 bits (78), Expect = 0.40
 Identities = 23/64 (35%), Positives = 31/64 (48%)
 Frame = +3

Query: 249  RLRKRAEIG*RENPSLTQIVSERRTLRTSRTQEPRELTPSRTSRTQDPRSTRNQVPRELK 428
            R R+   +G R + S++     R   R SRT   R  TPSR SRT    S R++ P   +
Sbjct: 1921 RRRRSISVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTP---SRRSRTPSRRR 1977

Query: 429  NQRS 440
              RS
Sbjct: 1978 RSRS 1981


>sp|Q6FX33|MSC3_CANGA Meiotic sister-chromatid recombination protein
           3 OS=Candida glabrata GN=MSC3 PE=3 SV=1
          Length = 834

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 28/107 (26%), Positives = 47/107 (43%)
 Frame = +3

Query: 63  NQDFLGVSISTLVFEE*QETQERRAPCASFHSLRADRALSG*QIYVRWEKATLV*AQGRQ 242
           N +  GVS S  +         R+ P    +SLR+DRA S   I     +     AQ R+
Sbjct: 57  NPNATGVSRSYSLMHSYNPAAARQPPAGRTYSLRSDRASS---ITSNSRRPAAGKAQVRR 113

Query: 243 GVRLRKRAEIG*RENPSLTQIVSERRTLRTSRTQEPRELTPSRTSRT 383
               ++RA +       + Q  +   T+ T++ ++P+  T S T +T
Sbjct: 114 ASTQQRRASVDQELGTGVNQPRTNSITVTTTKVRDPQGRTKSITKKT 160


>sp|P12036|NFH_HUMAN Neurofilament heavy polypeptide OS=Homo sapiens
           GN=NEFH PE=1 SV=3
          Length = 1026

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 24/79 (30%), Positives = 35/79 (44%)
 Frame = +1

Query: 226 ERKAAKGCACGKEPKSGEEKILL*HRL*AKEEP*EPQELKNPEN*HPQEPQELKTQDPQE 405
           E++ AK  A  K P+  +          AKEE   P E K+PE    + P E+K+  P++
Sbjct: 534 EKEEAKSPAEVKSPEKAKSP--------AKEEAKSPPEAKSPEKEEAKSPAEVKS--PEK 583

Query: 406 TKFLVNLRTKDLSGWSSPE 462
            K       K  +   SPE
Sbjct: 584 AKSPAKEEAKSPAEAKSPE 602


>sp|A0QHG7|LGT_MYCA1 Prolipoprotein diacylglyceryl transferase
           OS=Mycobacterium avium (strain 104) GN=lgt PE=3 SV=1
          Length = 440

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = +1

Query: 259 KEPKSGEEKILL*HRL*AKEEP*EPQELKNPEN*HPQEPQELKTQDPQ 402
           +EP+S E +        A EEP EP E + PE    +EP+E +T++P+
Sbjct: 355 EEPESEETE--------AAEEPGEP-EAEEPEEPEAEEPEEPETEEPE 393
tr_hit_id Q80TM4
Definition tr|Q80TM4|Q80TM4_MOUSE MKIAA1019 protein (Fragment) OS=Mus musculus
Align length 68
Score (bit) 35.4
E-value 2.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960277|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_P16, 5'
         (619 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q80TM4|Q80TM4_MOUSE MKIAA1019 protein (Fragment) OS=Mus muscu...    35   2.7  
tr|Q59A30|Q59A30_BOVIN SON DNA-binding protein OS=Bos taurus GN=...    35   2.7  
tr|B4USW0|B4USW0_OTOGA SON DNA-binding protein isoform F (Predic...    35   2.7  
tr|B1MT65|B1MT65_CALMO SON DNA-binding protein isoform F (Predic...    35   2.7  
tr|B0VXG9|B0VXG9_CALJA SON DNA-binding protein isoform F (Predic...    35   2.7  
tr|A9CB01|A9CB01_PAPAN SON DNA binding protein, isoform f (Predi...    35   2.7  
tr|B3EX17|B3EX17_SORAR SON protein (Predicted) OS=Sorex araneus ...    35   3.5  
tr|Q501G2|Q501G2_ARATH At4g32285 OS=Arabidopsis thaliana PE=2 SV=1     35   3.6  
tr|Q8C9T5|Q8C9T5_MOUSE Putative uncharacterized protein (Fragmen...    35   4.6  
tr|Q6IEB6|Q6IEB6_MOUSE Putative ISG12(B2) protein OS=Mus musculu...    34   6.1  
tr|Q8VC49|Q8VC49_MOUSE Putative uncharacterized protein OS=Mus m...    34   7.9  

>tr|Q80TM4|Q80TM4_MOUSE MKIAA1019 protein (Fragment) OS=Mus musculus
           GN=Son PE=2 SV=1
          Length = 480

 Score = 35.4 bits (80), Expect = 2.7
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +3

Query: 249 RLRKRAEIG*RENPSLTQIVSERRTLRTSRTQEPRELTPSRTSRTQDPR----STRNQVP 416
           R R+   +G R + S++     R   R SRT   R  TPSR SRT   R    S R++ P
Sbjct: 102 RRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 161

Query: 417 RELKNQRS 440
              +  RS
Sbjct: 162 SRRRRSRS 169


>tr|Q59A30|Q59A30_BOVIN SON DNA-binding protein OS=Bos taurus GN=son
            PE=4 SV=1
          Length = 2136

 Score = 35.4 bits (80), Expect = 2.7
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = +3

Query: 255  RKRAEIG*RENPSLTQIVSERRTLRTSRTQEPRELTPSRTSRTQDPR----STRNQVPRE 422
            R+R+  G R + S++     R   R SRT   R  TPSR SRT   R    S R++ P  
Sbjct: 1615 RRRSRSGGRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSR 1674

Query: 423  LKNQRS 440
             +  RS
Sbjct: 1675 RRRSRS 1680


>tr|B4USW0|B4USW0_OTOGA SON DNA-binding protein isoform F (Predicted)
            OS=Otolemur garnettii GN=SON PE=4 SV=2
          Length = 2411

 Score = 35.4 bits (80), Expect = 2.7
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +3

Query: 249  RLRKRAEIG*RENPSLTQIVSERRTLRTSRTQEPRELTPSRTSRTQDPR----STRNQVP 416
            R R+   +G R + S++     R   R SRT   R  TPSR SRT   R    S R++ P
Sbjct: 1921 RRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 1980

Query: 417  RELKNQRS 440
               +  RS
Sbjct: 1981 SRRRRSRS 1988


>tr|B1MT65|B1MT65_CALMO SON DNA-binding protein isoform F (Predicted)
            OS=Callicebus moloch GN=SON PE=4 SV=1
          Length = 2422

 Score = 35.4 bits (80), Expect = 2.7
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +3

Query: 249  RLRKRAEIG*RENPSLTQIVSERRTLRTSRTQEPRELTPSRTSRTQDPR----STRNQVP 416
            R R+   +G R + S++     R   R SRT   R  TPSR SRT   R    S R++ P
Sbjct: 1932 RRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 1991

Query: 417  RELKNQRS 440
               +  RS
Sbjct: 1992 SRRRRSRS 1999


>tr|B0VXG9|B0VXG9_CALJA SON DNA-binding protein isoform F (Predicted)
            OS=Callithrix jacchus GN=SON PE=4 SV=1
          Length = 2454

 Score = 35.4 bits (80), Expect = 2.7
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +3

Query: 249  RLRKRAEIG*RENPSLTQIVSERRTLRTSRTQEPRELTPSRTSRTQDPR----STRNQVP 416
            R R+   +G R + S++     R   R SRT   R  TPSR SRT   R    S R++ P
Sbjct: 1931 RRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 1990

Query: 417  RELKNQRS 440
               +  RS
Sbjct: 1991 SRRRRSRS 1998


>tr|A9CB01|A9CB01_PAPAN SON DNA binding protein, isoform f (Predicted)
            OS=Papio anubis GN=SON PE=4 SV=1
          Length = 2426

 Score = 35.4 bits (80), Expect = 2.7
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +3

Query: 249  RLRKRAEIG*RENPSLTQIVSERRTLRTSRTQEPRELTPSRTSRTQDPR----STRNQVP 416
            R R+   +G R + S++     R   R SRT   R  TPSR SRT   R    S R++ P
Sbjct: 1936 RRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 1995

Query: 417  RELKNQRS 440
               +  RS
Sbjct: 1996 SRRRRSRS 2003


>tr|B3EX17|B3EX17_SORAR SON protein (Predicted) OS=Sorex araneus
            GN=SON PE=4 SV=1
          Length = 1825

 Score = 35.0 bits (79), Expect = 3.5
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +3

Query: 249  RLRKRAEIG*RENPSLTQIVSERRTLRTSRTQEPRELTPSRTSRTQDPR----STRNQVP 416
            R R+   +G R + S++     R   R SRT   R  TPSR SRT   R    S R++ P
Sbjct: 1326 RRRRSRSVGRRRSFSVSPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 1385

Query: 417  RELKNQRS 440
               +  RS
Sbjct: 1386 SRRRRSRS 1393


>tr|Q501G2|Q501G2_ARATH At4g32285 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 635

 Score = 35.0 bits (79), Expect = 3.6
 Identities = 24/49 (48%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
 Frame = +1

Query: 316 EEP*EPQELKN---PEN*HPQEPQ--ELKTQDPQETKFLVNLRTKDLSG 447
           EEP +  E+K    PEN  P  P   E K Q PQ T  LVNLR  D+SG
Sbjct: 379 EEPVDMNEIKALPPPENHTPPPPPAPEPKPQQPQVTDDLVNLREDDVSG 427


>tr|Q8C9T5|Q8C9T5_MOUSE Putative uncharacterized protein (Fragment)
           OS=Mus musculus GN=Son PE=2 SV=1
          Length = 488

 Score = 34.7 bits (78), Expect = 4.6
 Identities = 23/64 (35%), Positives = 31/64 (48%)
 Frame = +3

Query: 249 RLRKRAEIG*RENPSLTQIVSERRTLRTSRTQEPRELTPSRTSRTQDPRSTRNQVPRELK 428
           R R+   +G R + S++     R   R SRT   R  TPSR SRT    S R++ P   +
Sbjct: 323 RRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTP---SRRSRTPSRRR 379

Query: 429 NQRS 440
             RS
Sbjct: 380 RSRS 383


>tr|Q6IEB6|Q6IEB6_MOUSE Putative ISG12(B2) protein OS=Mus musculus
           GN=1810023F06Rik PE=2 SV=1
          Length = 283

 Score = 34.3 bits (77), Expect = 6.1
 Identities = 19/34 (55%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
 Frame = +1

Query: 313 KEEP*EPQELKNPEN*HPQEPQEL-KTQDPQETK 411
           ++EP EPQEL+  +   PQEPQEL K Q+ QET+
Sbjct: 236 QKEPQEPQELQKQQE--PQEPQELQKQQETQETQ 267