DK960281 |
Clone id |
TST39A01NGRL0006_P20 |
Library |
TST39 |
Length |
526 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_P20. 5' end sequence. |
Accession |
DK960281 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL559Contig1 |
Sequence |
CTTCGTTCTAGCGCACCTGATCGCCTACGAGCTGTGCGAGGAGTGCGCTTGATTGCAGCG ATGAAGGTAGTCGCGGCTTACCTGCTGGCGCTGCTGGGGGGCAACTGCTCGCCTTCCGCT GCCGACATCAAGAATATTCTTGGCTCAGTTGGTTCTGAAGCTGACGATGACAGGATAGAC TTGCTACTGAGCGAGTTGAAAGGCAAGGACATTGTGGAGCTCATTGCTGCCGGAAAGGAG AAGCTTGCTTCTGTCCCTGCAGGTGGAGGTGGTGGCGTTGTGGTCAGTGCAGGAGGTGGT GGTGGTGCAGGTCCTGCCGCAGCAGTTGAGGAGAAAAAGGAGGAGAAAGAGGAAAAGAAG GAGCCCGAGGAGGAGTCCGATGATGACATGGGATTCAGTCTGTTTGACTAAGGTTTTTGC AAAGGGAGGCAGTGAACCGATTTTGTAATGCCCTTTCTTTAGATGTAATAGAAGTATATT TTCAGATGGCCAGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P41099 |
Definition |
sp|P41099|RLA2_PARAR 60S acidic ribosomal protein P2 OS=Parthenium argentatum |
Align length |
50 |
Score (bit) |
72.8 |
E-value |
8.0e-13 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q3HVP0 |
Definition |
tr|Q3HVP0|Q3HVP0_SOLTU 60s acidic ribosomal protein-like protein OS=Solanum tuberosum |
Align length |
50 |
Score (bit) |
82.4 |
E-value |
1.0e-14 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960281|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0006_P20, 5' (495 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q3HVP0|Q3HVP0_SOLTU 60s acidic ribosomal protein-like protein... 82 1e-14 tr|A7PPG7|A7PPG7_VITVI Chromosome chr8 scaffold_23, whole genome... 81 3e-14 tr|A5AGQ2|A5AGQ2_VITVI Putative uncharacterized protein (Chromos... 80 5e-14 tr|Q8H2B9|Q8H2B9_PRUDU 60s acidic ribosomal protein OS=Prunus du... 80 7e-14 tr|A9PCM7|A9PCM7_POPTR Putative uncharacterized protein OS=Popul... 79 1e-13 tr|A8QJ72|A8QJ72_9ROSI 60S acidic ribosomal protein P2 OS=Juglan... 78 2e-13 tr|A7QBE6|A7QBE6_VITVI Chromosome chr13 scaffold_74, whole genom... 77 3e-13 tr|A9PAR7|A9PAR7_POPTR Putative uncharacterized protein OS=Popul... 77 5e-13 tr|A9P894|A9P894_POPTR Putative uncharacterized protein OS=Popul... 77 5e-13 tr|Q7XYD5|Q7XYD5_WHEAT Acidic ribosomal protein (Fragment) OS=Tr... 75 1e-12 tr|Q5YJR8|Q5YJR8_HYAOR 60S acidic ribosomal protein OS=Hyacinthu... 75 2e-12 tr|Q677G0|Q677G0_HYAOR Acidic ribosomal protein OS=Hyacinthus or... 74 4e-12 tr|Q65WT5|Q65WT5_ORYSJ Os05g0445500 protein OS=Oryza sativa subs... 74 5e-12 tr|Q38M67|Q38M67_SOLTU Putative uncharacterized protein OS=Solan... 74 5e-12 tr|B8AYR2|B8AYR2_ORYSI Putative uncharacterized protein OS=Oryza... 74 5e-12 tr|A5BNT4|A5BNT4_VITVI Putative uncharacterized protein OS=Vitis... 74 5e-12 tr|A3B4J3|A3B4J3_ORYSJ Putative uncharacterized protein OS=Oryza... 74 5e-12 tr|A9NPB9|A9NPB9_PICSI Putative uncharacterized protein OS=Picea... 73 7e-12 tr|B2WCX9|B2WCX9_PYRTR 60S acidic ribosomal protein P2 OS=Pyreno... 73 9e-12 tr|A9U0Z9|A9U0Z9_PHYPA Predicted protein OS=Physcomitrella paten... 72 1e-11 tr|A9NWC8|A9NWC8_PICSI Putative uncharacterized protein OS=Picea... 72 1e-11 tr|A9RPY2|A9RPY2_PHYPA Predicted protein OS=Physcomitrella paten... 72 1e-11 tr|A9RKJ0|A9RKJ0_PHYPA Predicted protein OS=Physcomitrella paten... 72 1e-11 tr|A7QN01|A7QN01_VITVI Chromosome undetermined scaffold_129, who... 72 1e-11 tr|B7FMX7|B7FMX7_MEDTR Putative uncharacterized protein OS=Medic... 71 2e-11 tr|B6DRE4|B6DRE4_9LAMI 60S acidic ribosomal protein P2-like prot... 71 3e-11 tr|A9S6G5|A9S6G5_PHYPA Predicted protein OS=Physcomitrella paten... 71 3e-11 tr|Q2H653|Q2H653_CHAGB Putative uncharacterized protein OS=Chaet... 71 3e-11 tr|B8P0N4|B8P0N4_9APHY 60S acidic ribosomal protein P2 OS=Postia... 71 3e-11 tr|A9RV72|A9RV72_PHYPA Predicted protein OS=Physcomitrella paten... 70 7e-11
>tr|Q3HVP0|Q3HVP0_SOLTU 60s acidic ribosomal protein-like protein OS=Solanum tuberosum PE=4 SV=1 Length = 115
Score = 82.4 bits (202), Expect = 1e-14 Identities = 40/50 (80%), Positives = 46/50 (92%) Frame = +1
Query: 97 GGNCSPSAADIKNILGSVGSEADDDRIDLLLSELKGKDIVELIAAGKEKL 246 GGN SPSAAD+K IL SVG+EADDDRI+LLLS++KGKDI ELIAAG+EKL Sbjct: 13 GGNTSPSAADLKKILASVGAEADDDRIELLLSQVKGKDITELIAAGREKL 62
>tr|A7PPG7|A7PPG7_VITVI Chromosome chr8 scaffold_23, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00021645001 PE=4 SV=1 Length = 114
Score = 80.9 bits (198), Expect = 3e-14 Identities = 39/50 (78%), Positives = 46/50 (92%) Frame = +1
Query: 97 GGNCSPSAADIKNILGSVGSEADDDRIDLLLSELKGKDIVELIAAGKEKL 246 GGN PSA D+K+ILGSVG+EADDDRI+LLLSE+KGKDI ELIA+G+EKL Sbjct: 13 GGNTCPSANDLKDILGSVGAEADDDRIELLLSEVKGKDITELIASGREKL 62
>tr|A5AGQ2|A5AGQ2_VITVI Putative uncharacterized protein (Chromosome chr6 scaffold_25, whole genome shotgun sequence) OS=Vitis vinifera GN=GSVIVT00022049001 PE=4 SV=1 Length = 113
Score = 80.1 bits (196), Expect = 5e-14 Identities = 38/50 (76%), Positives = 46/50 (92%) Frame = +1
Query: 97 GGNCSPSAADIKNILGSVGSEADDDRIDLLLSELKGKDIVELIAAGKEKL 246 GGN PSA D+K+ILGSVG+EADDDRI+LLL+E+KGKDI ELIA+G+EKL Sbjct: 13 GGNTCPSAEDLKDILGSVGAEADDDRIELLLAEVKGKDITELIASGREKL 62
>tr|Q8H2B9|Q8H2B9_PRUDU 60s acidic ribosomal protein OS=Prunus dulcis GN=AL60SRP PE=4 SV=1 Length = 113
Score = 79.7 bits (195), Expect = 7e-14 Identities = 38/50 (76%), Positives = 45/50 (90%) Frame = +1
Query: 97 GGNCSPSAADIKNILGSVGSEADDDRIDLLLSELKGKDIVELIAAGKEKL 246 GGN +PSA D+K+ILGSVG+E DDDRI LLLSE+KGKDI ELIA+G+EKL Sbjct: 13 GGNTTPSAEDLKDILGSVGAETDDDRIQLLLSEVKGKDITELIASGREKL 62
>tr|A9PCM7|A9PCM7_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1 Length = 113
Score = 79.0 bits (193), Expect = 1e-13 Identities = 37/50 (74%), Positives = 45/50 (90%) Frame = +1
Query: 97 GGNCSPSAADIKNILGSVGSEADDDRIDLLLSELKGKDIVELIAAGKEKL 246 GGN P+A D+KNILGSVG++ADDDRI+LLLS +KGKDI ELIA+G+EKL Sbjct: 13 GGNTCPTAEDLKNILGSVGADADDDRIELLLSSVKGKDITELIASGREKL 62
>tr|A8QJ72|A8QJ72_9ROSI 60S acidic ribosomal protein P2 OS=Juglans regia PE=4 SV=1 Length = 113
Score = 78.2 bits (191), Expect = 2e-13 Identities = 37/50 (74%), Positives = 45/50 (90%) Frame = +1
Query: 97 GGNCSPSAADIKNILGSVGSEADDDRIDLLLSELKGKDIVELIAAGKEKL 246 GGN +P D+K+ILGSVG+EADDD+I+LLLSE+KGKDI ELIAAG+EKL Sbjct: 13 GGNTTPCTDDLKHILGSVGAEADDDKIELLLSEVKGKDITELIAAGREKL 62
>tr|A7QBE6|A7QBE6_VITVI Chromosome chr13 scaffold_74, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00034930001 PE=4 SV=1 Length = 111
Score = 77.4 bits (189), Expect = 3e-13 Identities = 38/50 (76%), Positives = 45/50 (90%) Frame = +1
Query: 97 GGNCSPSAADIKNILGSVGSEADDDRIDLLLSELKGKDIVELIAAGKEKL 246 GGN SP A D+K+ILGSVG+EADDD I+LLLSE+KGKDI ELIA+G+EKL Sbjct: 13 GGNGSPCADDLKSILGSVGAEADDDGIELLLSEVKGKDITELIASGREKL 62
>tr|A9PAR7|A9PAR7_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1 Length = 114
Score = 77.0 bits (188), Expect = 5e-13 Identities = 36/50 (72%), Positives = 45/50 (90%) Frame = +1
Query: 97 GGNCSPSAADIKNILGSVGSEADDDRIDLLLSELKGKDIVELIAAGKEKL 246 GGN P+A D+K+ILGSVG++ADDDRI+LLLS +KGKDI ELIA+G+EKL Sbjct: 13 GGNTCPTAEDLKHILGSVGADADDDRIELLLSSVKGKDITELIASGREKL 62
>tr|A9P894|A9P894_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1 Length = 114
Score = 77.0 bits (188), Expect = 5e-13 Identities = 36/50 (72%), Positives = 45/50 (90%) Frame = +1
Query: 97 GGNCSPSAADIKNILGSVGSEADDDRIDLLLSELKGKDIVELIAAGKEKL 246 GGN P+A D+K+ILGSVG++ADDDRI+LLLS +KGKDI ELIA+G+EKL Sbjct: 13 GGNTCPTAEDLKHILGSVGADADDDRIELLLSSVKGKDITELIASGREKL 62
>tr|Q7XYD5|Q7XYD5_WHEAT Acidic ribosomal protein (Fragment) OS=Triticum aestivum PE=2 SV=1 Length = 138
Score = 75.5 bits (184), Expect = 1e-12 Identities = 34/49 (69%), Positives = 45/49 (91%) Frame = +1
Query: 97 GGNCSPSAADIKNILGSVGSEADDDRIDLLLSELKGKDIVELIAAGKEK 243 GGN SPSAAD+KNIL SVG+EAD+++++ LL+ELKGKDI E+IA+G+EK Sbjct: 38 GGNSSPSAADVKNILDSVGAEADEEKLEFLLAELKGKDITEVIASGREK 86
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