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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960291
Clone id TST39A01NGRL0007_A08
Library
Length 617
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_A08. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
CCAATAGTTGGGTTTTTTTTTTGGCCATGCTCTGAAGTATTATGCTTATGCTCACAATTG
CTGAGGTCCGTACAGGATGAATTTTACAATGACTTATTTCTGCCTCCTCCTTCGACATGA
AGAAATAAAGTTTCTCTCCAGCATTGTGTGGTAATGTTGGTGTTTTTTGATCCTGCACGC
TGAGGATCTCTCCTTCCCAAGCAAGGCAGCCTTCTCATCTGGGCTTCGAATGCTTTGCAA
CACAGTTTTGAAACATAAAAGACGTTTCAGTCTTTGACTTCATACATCAGTATGTCAGGC
CTATCTTTGGCAGTGGGGCCTCGTGATGGAAGGACACCTACTCAAGCAGAGCAGAGCCTT
ACAGCAGGTTTAATGGGTTTTATTTTAACCATTGAGTTGCAATTGGTAGCGTTTATTGTG
GTCTTCGCAGCTAGTGGCTTGGTCCCACTATCAGATATTCTCTTCCCGGTGTTTGTAACT
GGATATCTTGCTGTTCTTTCAAAATTCGTATTTCCTAGCCGTCACAAGGAAGGTGGCCGC
ATGGAGGTTTTTCATGGCAGCCGCAACTTTCAACTCTGTGTTATGCTTGGGAAACAGGGA
TTGGGGCTTTTTTCTTC
■■Homology search results ■■ -
sp_hit_id Q0BQY6
Definition sp|Q0BQY6|ATPL_GRABC ATP synthase subunit c OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1)
Align length 56
Score (bit) 31.2
E-value 4.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960291|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_A08, 5'
         (617 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0BQY6|ATPL_GRABC ATP synthase subunit c OS=Granulibacter bet...    31   4.5  
sp|A5N2W5|GATB_CLOK5 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf...    31   5.8  

>sp|Q0BQY6|ATPL_GRABC ATP synthase subunit c OS=Granulibacter
           bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=atpE
           PE=3 SV=1
          Length = 74

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
 Frame = +1

Query: 280 SYISMSGLSLAVG-------PRDGRTPTQAEQSLTAGLMGFILTIELQLVAFIVVF 426
           S I+++G+ L +G           R P+  +Q  + G++GF LT  + L A ++ F
Sbjct: 14  SVIALAGVGLGIGNIFASLIASVARNPSSRDQVFSIGILGFALTEAVALFALLIAF 69


>sp|A5N2W5|GATB_CLOK5 Aspartyl/glutamyl-tRNA(Asn/Gln)
           amidotransferase subunit B OS=Clostridium kluyveri
           (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=gatB PE=3
           SV=1
          Length = 476

 Score = 30.8 bits (68), Expect = 5.8
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = -3

Query: 600 SLFPKHNTELKVAAAMKNLHAATFLVTARKYEF*KNSKI--SSYKHREE 460
           S+ PKHN +L V   +KN+++   L  A +YE+ + S +  S  K R+E
Sbjct: 197 SIRPKHNLKLGVKTEIKNMNSFKALEKAIQYEYKRQSDLIESGEKVRQE 245
tr_hit_id A9NSA3
Definition tr|A9NSA3|A9NSA3_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 112
Score (bit) 105.0
E-value 2.0e-21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960291|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_A08, 5'
         (617 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NSA3|A9NSA3_PICSI Putative uncharacterized protein OS=Picea...   105   2e-21
tr|A5BC59|A5BC59_VITVI Putative uncharacterized protein OS=Vitis...    97   8e-19
tr|A7R372|A7R372_VITVI Chromosome undetermined scaffold_488, who...    96   1e-18
tr|Q7XLP6|Q7XLP6_ORYSJ Os04g0386700 protein OS=Oryza sativa subs...    92   2e-17
tr|Q01KZ9|Q01KZ9_ORYSA OSIGBa0148P16.6 protein OS=Oryza sativa G...    92   2e-17
tr|Q9C7F4|Q9C7F4_ARATH Putative uncharacterized protein F13K9.9 ...    92   2e-17
tr|B8AT71|B8AT71_ORYSI Putative uncharacterized protein OS=Oryza...    89   2e-16
tr|Q8GZ91|Q8GZ91_ARATH Putative uncharacterized protein At1g2799...    86   1e-15
tr|Q6J9F5|Q6J9F5_9LILI Putative uncharacterized protein OS=Xerop...    86   1e-15
tr|A9S1T4|A9S1T4_PHYPA Predicted protein OS=Physcomitrella paten...    86   2e-15
tr|B6SI10|B6SI10_MAIZE Putative uncharacterized protein OS=Zea m...    84   7e-15
tr|A9U092|A9U092_PHYPA Predicted protein OS=Physcomitrella paten...    84   9e-15
tr|A9STS0|A9STS0_PHYPA Predicted protein OS=Physcomitrella paten...    83   1e-14
tr|A9RW77|A9RW77_PHYPA Predicted protein (Fragment) OS=Physcomit...    49   2e-04
tr|A9NZP1|A9NZP1_PICSI Putative uncharacterized protein OS=Picea...    47   9e-04
tr|A7QG28|A7QG28_VITVI Chromosome undetermined scaffold_91, whol...    44   0.006
tr|Q9FHB8|Q9FHB8_ARATH Genomic DNA, chromosome 5, TAC clone:K24M...    44   0.010
tr|Q94A91|Q94A91_ARATH AT5g52420/K24M7_17 OS=Arabidopsis thalian...    44   0.010
tr|A9SX08|A9SX08_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.049
tr|A9SKM0|A9SKM0_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.084
tr|Q94LU1|Q94LU1_ORYSJ Os10g0548100 protein OS=Oryza sativa subs...    37   1.2  
tr|A3C722|A3C722_ORYSJ Putative uncharacterized protein OS=Oryza...    37   1.2  
tr|A2Z9Y9|A2Z9Y9_ORYSI Putative uncharacterized protein OS=Oryza...    37   1.2  
tr|B8PWQ3|B8PWQ3_ORYSI DM280 protein OS=Oryza sativa subsp. indi...    36   1.6  
tr|A4SXM4|A4SXM4_POLSQ Hydroxyacylglutathione hydrolase OS=Polyn...    35   3.5  
tr|B1FVA6|B1FVA6_9BURK Heavy metal translocating P-type ATPase O...    34   7.8  

>tr|A9NSA3|A9NSA3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 261

 Score =  105 bits (262), Expect = 2e-21
 Identities = 61/112 (54%), Positives = 75/112 (66%), Gaps = 5/112 (4%)
 Frame = +1

Query: 292 MSGLSLAVGPRDGRTPTQAE-----QSLTAGLMGFILTIELQLVAFIVVFAASGLVPLSD 456
           MSGLSLAV PR G    + E     Q L  G+MG +  IELQLVAFI+VF+ASGLVPL D
Sbjct: 1   MSGLSLAVAPRLGSGMNEGEKDVRGQGLMGGVMGSLRVIELQLVAFILVFSASGLVPLVD 60

Query: 457 ILFPVFVTGYLAVLSKFVFPSRHKEGGRMEVFHGSRNFQLCVMLGKQGLGLF 612
           ++ P+FV+ YL  LS++ FPS    G   EVFHGSR FQ  V++G   +GLF
Sbjct: 61  LVSPLFVSLYLLALSRWAFPSYRTPGNAAEVFHGSRMFQFYVVVGTT-VGLF 111


>tr|A5BC59|A5BC59_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_014982 PE=4 SV=1
          Length = 279

 Score = 97.1 bits (240), Expect = 8e-19
 Identities = 58/126 (46%), Positives = 75/126 (59%), Gaps = 19/126 (15%)
 Frame = +1

Query: 292 MSGLSLAVGPRD-----------------GRTPTQAEQSLTAGLMGFILTIELQLVAFIV 420
           MSG+SLAV PR                  GR     +QS+  G+MG +  IELQLVAFI+
Sbjct: 1   MSGVSLAVAPRTEPDKTTTTPNTKPQQQPGRHNHHQQQSVVGGVMGSLRVIELQLVAFIM 60

Query: 421 VFAASGLVPLSDILFPVFVTGYLAVLSKFVFPSR--HKEGGRMEVFHGSRNFQLCVMLGK 594
           VF+ASGLVPL D++FP F + YL  LS+F FP+       G  E+F GSR F+L V++G 
Sbjct: 61  VFSASGLVPLLDLIFPAFASAYLLALSRFAFPAHGSSTSTGSQEIFQGSRLFRLYVIVG- 119

Query: 595 QGLGLF 612
             +GLF
Sbjct: 120 TAIGLF 125


>tr|A7R372|A7R372_VITVI Chromosome undetermined scaffold_488, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00013488001 PE=4 SV=1
          Length = 279

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 58/126 (46%), Positives = 75/126 (59%), Gaps = 19/126 (15%)
 Frame = +1

Query: 292 MSGLSLAVGPRD-----------------GRTPTQAEQSLTAGLMGFILTIELQLVAFIV 420
           MSG+SLAV PR                  GR     +QS+  G+MG +  IELQLVAFI+
Sbjct: 1   MSGVSLAVAPRTEPDKTTTTPNTKPQQQPGRHNHHHQQSVVGGVMGSLRVIELQLVAFIM 60

Query: 421 VFAASGLVPLSDILFPVFVTGYLAVLSKFVFPSRHK--EGGRMEVFHGSRNFQLCVMLGK 594
           VF+ASGLVPL D++FP F + YL  LS+F FP+       G  E+F GSR F+L V++G 
Sbjct: 61  VFSASGLVPLLDLIFPAFASAYLLALSRFAFPAHGSTTSTGSREIFQGSRLFRLYVIVG- 119

Query: 595 QGLGLF 612
             +GLF
Sbjct: 120 TAIGLF 125


>tr|Q7XLP6|Q7XLP6_ORYSJ Os04g0386700 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0044M19.10 PE=2 SV=2
          Length = 274

 Score = 92.4 bits (228), Expect = 2e-17
 Identities = 59/119 (49%), Positives = 73/119 (61%), Gaps = 12/119 (10%)
 Frame = +1

Query: 292 MSGLSLAVGPR-DGRTPTQAEQ------SLTAGLMGFILTIELQLVAFIVVFAASGLVPL 450
           MSG+SLAVGPR  G   T AE+      ++  G+MG +  IELQLVAFI+VF+ASGLVPL
Sbjct: 1   MSGMSLAVGPRTSGTDDTAAERGQQQPSTMLGGVMGSLRVIELQLVAFIMVFSASGLVPL 60

Query: 451 SDILFPVFVTGYLAVLSKFVFPSRH-----KEGGRMEVFHGSRNFQLCVMLGKQGLGLF 612
            D+ FPV  T YL +LS+  FP  H           E+F GS  FQ  V+LG   +GLF
Sbjct: 61  IDLAFPVATTLYLLLLSRLSFPPLHSTLPSSSSSSQEIFRGSTWFQAYVVLGTT-VGLF 118


>tr|Q01KZ9|Q01KZ9_ORYSA OSIGBa0148P16.6 protein OS=Oryza sativa
           GN=OSIGBa0148P16.6 PE=4 SV=1
          Length = 274

 Score = 92.4 bits (228), Expect = 2e-17
 Identities = 59/119 (49%), Positives = 73/119 (61%), Gaps = 12/119 (10%)
 Frame = +1

Query: 292 MSGLSLAVGPR-DGRTPTQAEQ------SLTAGLMGFILTIELQLVAFIVVFAASGLVPL 450
           MSG+SLAVGPR  G   T AE+      ++  G+MG +  IELQLVAFI+VF+ASGLVPL
Sbjct: 1   MSGMSLAVGPRTSGTDDTAAERGQQQPSTMLGGVMGSLRVIELQLVAFIMVFSASGLVPL 60

Query: 451 SDILFPVFVTGYLAVLSKFVFPSRH-----KEGGRMEVFHGSRNFQLCVMLGKQGLGLF 612
            D+ FPV  T YL +LS+  FP  H           E+F GS  FQ  V+LG   +GLF
Sbjct: 61  IDLAFPVATTLYLLLLSRLSFPPLHSTLPSSSSSSQEIFRGSTWFQAYVVLGTT-VGLF 118


>tr|Q9C7F4|Q9C7F4_ARATH Putative uncharacterized protein F13K9.9
           OS=Arabidopsis thaliana GN=At1g27990 PE=4 SV=1
          Length = 271

 Score = 92.0 bits (227), Expect = 2e-17
 Identities = 58/119 (48%), Positives = 76/119 (63%), Gaps = 12/119 (10%)
 Frame = +1

Query: 292 MSGLSLAVGPRDG--RTPTQAEQS----LTA------GLMGFILTIELQLVAFIVVFAAS 435
           MSG+SLAVGPR    +T + +E+     +TA      GLMG +  IELQLVAFI+VF+AS
Sbjct: 1   MSGVSLAVGPRTDVDKTASSSEKGRWSGMTAIGGGSGGLMGSLRVIELQLVAFILVFSAS 60

Query: 436 GLVPLSDILFPVFVTGYLAVLSKFVFPSRHKEGGRMEVFHGSRNFQLCVMLGKQGLGLF 612
           GLVP+ D+LFP F + Y+  LS+  FPS        EVF GS+ F+L V+ G   +GLF
Sbjct: 61  GLVPILDMLFPAFASIYIIALSRLAFPSHGVSTASPEVFRGSKLFRLYVISGTT-IGLF 118


>tr|B8AT71|B8AT71_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_15650 PE=4 SV=1
          Length = 243

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 58/119 (48%), Positives = 72/119 (60%), Gaps = 12/119 (10%)
 Frame = +1

Query: 292 MSGLSLAVGPR-DGRTPTQAEQ------SLTAGLMGFILTIELQLVAFIVVFAASGLVPL 450
           MSG+SLAVGPR  G   T AE+      ++  G+MG +  IELQLVAFI+VF+ASGLVPL
Sbjct: 1   MSGMSLAVGPRTSGTDDTAAERGQQQPSTMLGGVMGSLRVIELQLVAFIMVFSASGLVPL 60

Query: 451 SDILFPVFVTGYLAVLSKFVFPSRH-----KEGGRMEVFHGSRNFQLCVMLGKQGLGLF 612
            D+ FPV    YL +LS+  FP  H           E+F GS  FQ  V+LG   +GLF
Sbjct: 61  IDLAFPVANNLYLLLLSRLSFPPLHSTLPSSSSSSQEIFRGSTWFQAYVVLGTT-VGLF 118


>tr|Q8GZ91|Q8GZ91_ARATH Putative uncharacterized protein
           At1g27990/F13K9_9 OS=Arabidopsis thaliana
           GN=At1g27990/F13K9_9 PE=4 SV=1
          Length = 119

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 52/106 (49%), Positives = 68/106 (64%), Gaps = 12/106 (11%)
 Frame = +1

Query: 292 MSGLSLAVGPRDG--RTPTQAEQS----LTA------GLMGFILTIELQLVAFIVVFAAS 435
           MSG+SLAVGPR    +T + +E+     +TA      GLMG +  IELQLVAFI+VF+AS
Sbjct: 1   MSGVSLAVGPRTDVDKTASSSEKGRWSGMTAIGGGSGGLMGSLRVIELQLVAFILVFSAS 60

Query: 436 GLVPLSDILFPVFVTGYLAVLSKFVFPSRHKEGGRMEVFHGSRNFQ 573
           GLVP+ D+LFP F + Y+  LS+  FPS        EVF GS+ F+
Sbjct: 61  GLVPILDMLFPAFASIYIIALSRLAFPSHGVSTASPEVFRGSKLFR 106


>tr|Q6J9F5|Q6J9F5_9LILI Putative uncharacterized protein
           OS=Xerophyta humilis PE=2 SV=1
          Length = 239

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 45/80 (56%), Positives = 58/80 (72%)
 Frame = +1

Query: 373 MGFILTIELQLVAFIVVFAASGLVPLSDILFPVFVTGYLAVLSKFVFPSRHKEGGRMEVF 552
           MG +  IELQLVAFI+VF+ASGLVPL D++FPVF T Y  +LS+  FP+ H +    EVF
Sbjct: 1   MGSLRVIELQLVAFIMVFSASGLVPLFDLVFPVFATAYFIILSRVAFPTYHTQA--REVF 58

Query: 553 HGSRNFQLCVMLGKQGLGLF 612
           HGS+ FQ  V++G   +GLF
Sbjct: 59  HGSKPFQAYVVIG-TAVGLF 77


>tr|A9S1T4|A9S1T4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_180370 PE=4 SV=1
          Length = 279

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 53/117 (45%), Positives = 75/117 (64%), Gaps = 10/117 (8%)
 Frame = +1

Query: 292 MSGLSLAVGPR----DGRTPTQ------AEQSLTAGLMGFILTIELQLVAFIVVFAASGL 441
           MSG +LA GPR    D  T  +       + +   G+MG +  IELQLVAFI+VF+ASGL
Sbjct: 1   MSGATLATGPRIPKHDAETRGEKYDRRAGDTAGLGGIMGSLRVIELQLVAFIIVFSASGL 60

Query: 442 VPLSDILFPVFVTGYLAVLSKFVFPSRHKEGGRMEVFHGSRNFQLCVMLGKQGLGLF 612
           VP+ D++FPVF+T Y  +L+  VFP+ +     ++VF G+R FQ+ V+LG   +GLF
Sbjct: 61  VPIVDLVFPVFLTIYAFLLNSLVFPN-YGNPESLQVFRGNRLFQVYVILGTV-IGLF 115