DK960300 |
Clone id |
TST39A01NGRL0007_A18 |
Library |
TST39 |
Length |
627 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_A18. 5' end sequence. |
Accession |
DK960300 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL162Contig1 |
Sequence |
GTGAAGAAGGCGATGGAGTACCATCCAGGCCCAGGTCGGAATCAGCTCTTTGTGCCAGGG CCCGTGAATGTCCCCGAGCAAGTTCTGCGCGCCATGAACCGCAACAATGAAGACTACCGC TCCCCCGCCATGCCTACCCTCTCCAAGTCCGTTCTTGAGGATATCAAACGCATCTTCAAG ACCACAACAGCTACTTCCTTCATCATTCCCACCACAGGAACTGGTGCTTGGGAGAGTGCT CTAACCAACACCCTGTCTCCAAGGGACAAAATCCTCACCTTCAGGCTGGGGCAATTCAGT CTTCTATGGGTAGACCAGATGCAGCGGCTCAATTTTGATGTTGATGTGGTGGATGTGGAA TGGGGTGCTGGTGTTGACCTCTCAGTGCTTCGAGCAAAGCTTCAGTCTGACACCAAACAT GAAATTAAGGCTGTGTGCGTAGTTCACAATGAGACAGCAACAGGCGTTACCAATGATCTT GCTGGGATTCGCAATGTCATAGATGCATGCCAGCATCCAGCTCTCTTTCTTGTGGATGGT GTATCATCTATTTGTGCGCTAGACTTTCGAATGGATGAGTGGTGCATAGATGTTGCACTA ACTGGTTCGCAGAAGGCCCTCTCTCTA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q56YA5 |
Definition |
sp|Q56YA5|SGAT_ARATH Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana |
Align length |
205 |
Score (bit) |
292.0 |
E-value |
1.0e-78 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960300|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0007_A18, 5' (627 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q56YA5|SGAT_ARATH Serine--glyoxylate aminotransferase OS=Arab... 292 1e-78 sp|O08374|SGAA_HYPME Serine--glyoxylate aminotransferase OS=Hyph... 200 4e-51 sp|P55819|SGAA_METEX Serine--glyoxylate aminotransferase OS=Meth... 177 5e-44 sp|P16421|DHSS_ANACY Soluble hydrogenase 42 kDa subunit OS=Anaba... 110 6e-24 sp|Q58369|Y959_METJA Uncharacterized aminotransferase MJ0959 OS=... 92 3e-18 sp|O32148|PUCG_BACSU Purine catabolism protein pucG OS=Bacillus ... 91 5e-18 sp|P14776|DHSS_SYNP1 Soluble hydrogenase, small subunit OS=Synec... 91 5e-18 sp|P43567|AGX1_YEAST Alanine--glyoxylate aminotransferase 1 OS=S... 82 2e-15 sp|Q54GT6|SPYA_DICDI Serine--pyruvate aminotransferase OS=Dictyo... 68 4e-11 sp|P21549|SPYA_HUMAN Serine--pyruvate aminotransferase OS=Homo s... 65 3e-10 sp|Q5RDP0|SPYA_PONAB Serine--pyruvate aminotransferase OS=Pongo ... 60 9e-09 sp|O35423|SPYA_MOUSE Serine--pyruvate aminotransferase, mitochon... 60 9e-09 sp|P09139|SPYA_RAT Serine--pyruvate aminotransferase, mitochondr... 58 4e-08 sp|P31030|SPYA_RABIT Serine--pyruvate aminotransferase OS=Orycto... 58 4e-08 sp|P41689|SPYA_FELCA Serine--pyruvate aminotransferase, mitochon... 56 1e-07 sp|P31029|SPYA_CALJA Serine--pyruvate aminotransferase, mitochon... 56 1e-07 sp|B1HPR6|PHNW_LYSSC 2-aminoethylphosphonate--pyruvate transamin... 47 6e-05 sp|A6L4N0|PHNW_BACV8 2-aminoethylphosphonate--pyruvate transamin... 47 8e-05 sp|Q6HLM0|PHNW_BACHK 2-aminoethylphosphonate--pyruvate transamin... 45 2e-04 sp|Q63E45|PHNW_BACCZ 2-aminoethylphosphonate--pyruvate transamin... 45 2e-04 sp|Q81TE0|PHNW_BACAN 2-aminoethylphosphonate--pyruvate transamin... 45 2e-04 sp|A0RBE9|PHNW_BACAH 2-aminoethylphosphonate--pyruvate transamin... 45 3e-04 sp|Q73BH8|PHNW_BACC1 2-aminoethylphosphonate--pyruvate transamin... 45 4e-04 sp|Q8RLU1|PHNW_BACCE 2-aminoethylphosphonate--pyruvate transamin... 44 5e-04 sp|Q9KLY7|PHNW_VIBCH 2-aminoethylphosphonate--pyruvate transamin... 44 7e-04 sp|A5F049|PHNW_VIBC3 2-aminoethylphosphonate--pyruvate transamin... 44 7e-04 sp|Q81G81|PHNW_BACCR 2-aminoethylphosphonate--pyruvate transamin... 43 0.001 sp|Q7MF44|PHNW_VIBVY 2-aminoethylphosphonate--pyruvate transamin... 42 0.002 sp|Q57SD3|PHNW_SALCH 2-aminoethylphosphonate--pyruvate transamin... 42 0.002 sp|A1SY89|PHNW_PSYIN 2-aminoethylphosphonate--pyruvate transamin... 42 0.002
>sp|Q56YA5|SGAT_ARATH Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana GN=AGT1 PE=1 SV=2 Length = 401
Score = 292 bits (747), Expect = 1e-78 Identities = 137/205 (66%), Positives = 167/205 (81%) Frame = +1
Query: 13 MEYHPGPGRNQLFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXX 192 M+Y GPGR+ LFVPGPVN+PE V+RAMNRNNEDYRSPA+P L+K++LED+K+IFK Sbjct: 1 MDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSG 60
Query: 193 XXXXXXXXXXGAWESALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAG 372 GAWESALTNTLSP D+I++F +GQFSLLW+DQ +RLNF+VDVV+ +WG G Sbjct: 61 TPFLFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQG 120
Query: 373 VDLSVLRAKLQSDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQHPALFLVDGVSSI 552 +L VL +KL D H IKA+C+VHNETATGVTND++ +R ++D +HPAL LVDGVSSI Sbjct: 121 ANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSI 180
Query: 553 CALDFRMDEWCIDVALTGSQKALSL 627 CALDFRMDEW +DVALTGSQKALSL Sbjct: 181 CALDFRMDEWGVDVALTGSQKALSL 205
>sp|O08374|SGAA_HYPME Serine--glyoxylate aminotransferase OS=Hyphomicrobium methylovorum GN=sgaA PE=3 SV=2 Length = 405
Score = 200 bits (509), Expect = 4e-51 Identities = 99/194 (51%), Positives = 124/194 (63%) Frame = +1
Query: 46 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXXXXG 225 LF+PGP N+P+ V AMN ED RSP P + + ED+K+ FK G Sbjct: 7 LFIPGPTNIPDAVRMAMNIPMEDMRSPEFPKFTLPLFEDLKKAFKMKDGRVFIFPSSGTG 66
Query: 226 AWESALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGVDLSVLRAKLQ 405 AWESA+ NTL+ DK+L R GQFSLLWVD +RL V+V D EWG GV + L Sbjct: 67 AWESAVENTLATGDKVLMSRFGQFSLLWVDMCERLGLKVEVCDEEWGTGVPVEKYADILA 126
Query: 406 SDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQHPALFLVDGVSSICALDFRMDEWC 585 D HEIKAV V HNETATGV++D+AG+R +DA +HPAL +VDGVSS+ +LD RM EW Sbjct: 127 KDKNHEIKAVFVTHNETATGVSSDVAGVRKALDAAKHPALLMVDGVSSVGSLDMRMGEWG 186
Query: 586 IDVALTGSQKALSL 627 +D ++GSQK L Sbjct: 187 VDCCVSGSQKGFML 200
>sp|P55819|SGAA_METEX Serine--glyoxylate aminotransferase OS=Methylobacterium extorquens GN=sgaA PE=3 SV=1 Length = 379
Score = 177 bits (448), Expect = 5e-44 Identities = 93/199 (46%), Positives = 117/199 (58%) Frame = +1
Query: 31 PGRNQLFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXX 210 PGRN LFVPGP N+P++V+RAM +ED+RS P+L+K + ED K++F Sbjct: 2 PGRNHLFVPGPTNIPDRVMRAMMVQSEDHRSVDFPSLTKPLFEDTKKVFGSTEGTIFLFP 61
Query: 211 XXXXGAWESALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGVDLSVL 390 G WESAL+NTL+ DK+L R GQFS LW+D QRL DV V + EWG G + Sbjct: 62 ASGTGIWESALSNTLARGDKVLAARFGQFSHLWIDMAQRLGLDVVVQEEEWGTGAKPEKI 121
Query: 391 RAKLQSDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQHPALFLVDGVSSICALDFR 570 L++D HEIKAV VVHNETATGVT+++ +R IDA HPAL V Sbjct: 122 EEALRADKNHEIKAVMVVHNETATGVTSNIGAVRKAIDAAGHPALLFV------------ 169
Query: 571 MDEWCIDVALTGSQKALSL 627 D A+ GSQK L L Sbjct: 170 ------DCAIAGSQKGLML 182
>sp|P16421|DHSS_ANACY Soluble hydrogenase 42 kDa subunit OS=Anabaena cylindrica PE=1 SV=1 Length = 383
Score = 110 bits (275), Expect = 6e-24 Identities = 66/190 (34%), Positives = 100/190 (52%) Frame = +1
Query: 46 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXXXXG 225 L +PGP VPE L A+ ++ +R+ + V +++K + + G Sbjct: 7 LMIPGPTPVPEAALLALAKHPIGHRTSEFSNMMGEVTQNLKWLHQTESDVLMLNVSGT-G 65
Query: 226 AWESALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGVDLSVLRAKLQ 405 A E+ + N LSP D+IL G+F WV+ Q +V+ + EWG +D KLQ Sbjct: 66 AVEAGMINFLSPGDRILVGSNGKFGERWVEVGQAFGLNVEAITAEWGQPLDPDKFAQKLQ 125
Query: 406 SDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQHPALFLVDGVSSICALDFRMDEWC 585 +DT EIKAV + H+ET+TGV NDL I + + AL +VD V+S+ A + +D Sbjct: 126 ADTNKEIKAVIITHSETSTGVINDLVAINSHVKE-HGQALIIVDAVTSLGAYNVPVDALG 184
Query: 586 IDVALTGSQK 615 +DV +GSQK Sbjct: 185 LDVVASGSQK 194
>sp|Q58369|Y959_METJA Uncharacterized aminotransferase MJ0959 OS=Methanocaldococcus jannaschii GN=MJ0959 PE=3 SV=1 Length = 385
Score = 91.7 bits (226), Expect = 3e-18 Identities = 61/193 (31%), Positives = 98/193 (50%) Frame = +1
Query: 46 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXXXXG 225 L +PGP VP +VL AM +R+ L + +E +K++F Sbjct: 10 LMIPGPTMVPPEVLNAMALPVIGHRTKDYSNLLEDTIEKLKKVF-ITENDTFLITGSGTA 68
Query: 226 AWESALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGVDLSVLRAKLQ 405 A + A++N + DK+L G F + + ++ + +DVEWG + ++ L Sbjct: 69 AMDMAISNIIKRGDKVLNIVTGNFGERFANIVKAYKGEAIRLDVEWGDMAEPEAVKEIL- 127
Query: 406 SDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQHPALFLVDGVSSICALDFRMDEWC 585 D +IKAV VVHNET+TG N + I V+ + AL++VD VSS+ +D++ Sbjct: 128 -DKYDDIKAVTVVHNETSTGARNPIKEIGEVVK--DYDALYIVDTVSSLGGDYVNVDKFH 184
Query: 586 IDVALTGSQKALS 624 ID+ +TGSQK L+ Sbjct: 185 IDICVTGSQKCLA 197
>sp|O32148|PUCG_BACSU Purine catabolism protein pucG OS=Bacillus subtilis GN=pucG PE=2 SV=1 Length = 416
Score = 90.9 bits (224), Expect = 5e-18 Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 1/195 (0%) Frame = +1
Query: 46 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXXXXG 225 + PGPV V +VLR M+ PA + +E ++ +F+ Sbjct: 14 IMTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRA 73
Query: 226 AWESALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGVDLSVLRAKLQ 405 E+ L + + P D +L G+F L + +R +V +++ EWG D + +++ Sbjct: 74 GIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIK 133
Query: 406 SDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQ-HPALFLVDGVSSICALDFRMDEW 582 K + K V +VH ET+TG + L I +AC+ ALF+VD V++I + ++DEW Sbjct: 134 ---KVKPKIVAMVHGETSTGRIHPLKAIG---EACRTEDALFIVDAVATIGGCEVKVDEW 187
Query: 583 CIDVALTGSQKALSL 627 ID A+ G+QK LS+ Sbjct: 188 KIDAAIGGTQKCLSV 202
>sp|P14776|DHSS_SYNP1 Soluble hydrogenase, small subunit OS=Synechococcus sp. (strain PCC 6716) PE=3 SV=1 Length = 384
Score = 90.9 bits (224), Expect = 5e-18 Identities = 58/190 (30%), Positives = 92/190 (48%) Frame = +1
Query: 46 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXXXXG 225 L +PGP VPE VL ++ ++ +RS + ++ IK + + G Sbjct: 7 LMIPGPTPVPESVLLSLGKHPIGHRSGEFSQIMAAMTAGIKWLHQTQNEVLILAASGT-G 65
Query: 226 AWESALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGVDLSVLRAKLQ 405 A E+ + N LS D+++ G+F W + + + WG ++ +A L Sbjct: 66 AMEAGIINFLSAGDRVVVGCNGKFGDRWGEVCDAYGLTTERISAPWGQPLNPDDFKAVLD 125
Query: 406 SDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQHPALFLVDGVSSICALDFRMDEWC 585 + KAV V H+ET+TGV NDL I + A AL +VD V+S+ A+ +DEW Sbjct: 126 GHRQKPSKAVIVTHSETSTGVINDLEAINRHVKA-HGQALIIVDAVTSLGAVSVPIDEWG 184
Query: 586 IDVALTGSQK 615 +DV +GSQK Sbjct: 185 LDVVGSGSQK 194
>sp|P43567|AGX1_YEAST Alanine--glyoxylate aminotransferase 1 OS=Saccharomyces cerevisiae GN=AGX1 PE=1 SV=1 Length = 385
Score = 82.4 bits (202), Expect = 2e-15 Identities = 58/199 (29%), Positives = 95/199 (47%), Gaps = 7/199 (3%) Frame = +1
Query: 46 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXXXXG 225 L +PGP+ + V +A++ + + SP ++ + VL++ + +FK Sbjct: 8 LLIPGPIILSGAVQKALDVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGS 67
Query: 226 A---WESALTNTL---SPRDKILTFRLGQFSLLWVDQMQRLNFDVDVV-DVEWGAGVDLS 384 W+ +N + +P +L G FS + D ++ VDVV ++ G V L Sbjct: 68 GTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLE 127
Query: 385 VLRAKLQSDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQHPALFLVDGVSSICALD 564 ++ KL +++ AV V H +T+T V +DL I I F+VD V SI + Sbjct: 128 LITEKL---SQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEE 184
Query: 565 FRMDEWCIDVALTGSQKAL 621 F DEW +D ALT SQKA+ Sbjct: 185 FEFDEWGVDFALTASQKAI 203
>sp|Q54GT6|SPYA_DICDI Serine--pyruvate aminotransferase OS=Dictyostelium discoideum GN=agxt PE=3 SV=1 Length = 407
Score = 67.8 bits (164), Expect = 4e-11 Identities = 47/193 (24%), Positives = 88/193 (45%) Frame = +1
Query: 46 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXXXXG 225 L PGP N+ +V + + + Y + + +E ++ +F+ Sbjct: 21 LLGPGPSNLHPRVNQQLISSMVGYTDASYYKVMDETMELMRYLFQTDNHFTIPISGAGTA 80
Query: 226 AWESALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGVDLSVLRAKLQ 405 A E+ ++N + P DK++ G FS R ++ VD +WG L + + L Sbjct: 81 AMETCVSNLIEPGDKVVCLVSGFFSDRIYQMAVRYGGNILKVDKQWGQWFALEEIESAL- 139
Query: 406 SDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQHPALFLVDGVSSICALDFRMDEWC 585 +H+ + +V ET+TGV + G+ + ++ L +VD V+++ + +D+W Sbjct: 140 --VQHKPSLLTLVFGETSTGVKQQMEGVGELCK--KYNCLLMVDCVAALGGVPVFVDDWK 195
Query: 586 IDVALTGSQKALS 624 ID TG+QK LS Sbjct: 196 IDACYTGTQKCLS 208
>sp|P21549|SPYA_HUMAN Serine--pyruvate aminotransferase OS=Homo sapiens GN=AGXT PE=1 SV=1 Length = 392
Score = 65.1 bits (157), Expect = 3e-10 Identities = 55/196 (28%), Positives = 86/196 (43%), Gaps = 1/196 (0%) Frame = +1
Query: 40 NQLFV-PGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXX 216 NQL + PGP N+P +++ A S M + + E I+ +F+ Sbjct: 22 NQLLLGPGPSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGS 81
Query: 217 XXGAWESALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGVDLSVLRA 396 A E+AL N L P D L G + VD +R+ V + + G L + Sbjct: 82 GHCALEAALVNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTLQEVEE 141
Query: 397 KLQSDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQHPALFLVDGVSSICALDFRMD 576 L +H+ + + H E++TGV L G + ++ L LVD V+S+ MD Sbjct: 142 GL---AQHKPVLLFLTHGESSTGVLQPLDGFGELCH--RYKCLLLVDSVASLGGTPLYMD 196
Query: 577 EWCIDVALTGSQKALS 624 ID+ +GSQKAL+ Sbjct: 197 RQGIDILYSGSQKALN 212
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8LKC9 |
Definition |
tr|B8LKC9|B8LKC9_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
200 |
Score (bit) |
305.0 |
E-value |
2.0e-81 |
Report |
|