DK960310
Clone id TST39A01NGRL0007_B05
Library
Length 669
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_B05. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
ACTTGGACTGCATCAGTTTCACCGCCAGATTGTTGGGTCCATCCACACCTAAGCTTGTAC
ATTGTGGGTTGTTCTGTCTGCTTGGATAACTTCATGATATGCCTGAAGCTTGAAAGGTCG
CACCTGCATAGCCAAGTGTTACCCTTGCTCATCGTCGTCGCCGCCTCGTCTATAGCATGC
CATCGACTTCAATTCATCAAGTCCTCCAATTATATCTGTAAAATCTGTTGGCATCTCAAT
CAGAAGCGAAGATCTTTCCTGCTTCATGTCCAATTCTCCACCTGGTCCCCTCTACTTGGT
GGTTGTTCCTCTCCACTTTGCAGGTAAGGTATCCTGCTTTGACGATACTCAGTCCAGTTT
GGAGGGCTTCATCTTCTGCAATCTCTCTCAACAGGGTTCAATTTGATAGATAACTCTCCG
ACAGGGTTCAATCAATAGAAAGATCATGGGGTGAGCTACTTGCATTATGAACAGCAGGGT
TGGGTTTGCAGATTTAGCATCAAGCGTGTGGGTTGCACTATAAAGAGAAAAGGTGATCTC
AGCGAGAATCTCATGGTGTAGAGCTCATGTGCAGCAAGAGTATGCATAGGTTCTCTAATG
CTTCCACACAAAACCACTGTGGATGTGCTTGGGTGGGCTACCCTAGTTCTGGTAATTGCT
CTTTGCCTG
■■Homology search results ■■ -
sp_hit_id Q09317
Definition sp|Q09317|YQX4_CAEEL Uncharacterized protein F34H10.4 OS=Caenorhabditis elegans
Align length 127
Score (bit) 31.2
E-value 5.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960310|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_B05, 5'
(669 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q09317|YQX4_CAEEL Uncharacterized protein F34H10.4 OS=Caenorh... 31 5.2
sp|Q9JI39|ABCBA_MOUSE ATP-binding cassette sub-family B member 1... 30 8.8

>sp|Q09317|YQX4_CAEEL Uncharacterized protein F34H10.4
OS=Caenorhabditis elegans GN=F34H10.4 PE=2 SV=1
Length = 452

Score = 31.2 bits (69), Expect = 5.2
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Frame = -2

Query: 431 LNPVGELSIKLNPVERDCRR*SPPNWTEYRQSRIP---YLQSGEEQPPSRGDQVENWT*S 261
+ +GE+ I +PV R+ PP++ E Q P +L + + PPS G+++E
Sbjct: 168 MGQLGEILIGADPVISPRRQFPPPHYLEQLQRDHPPLFHLNAFDSPPPSPGNELE----- 222

Query: 260 RKDLRF*LRCXXXXXXXLEDLMN*SRWHAIDE--AATTMSKGNTWLCRCDL-SSFRHIMK 90
D F ++ + + +DE ++ N +C+ DL SSF++++K
Sbjct: 223 --DYDFNMQIDLNGVIPADVQL-------LDEFQQENDKTESNNTICQLDLCSSFQYLLK 273

Query: 89 LSKQTEQ 69
+ + Q
Sbjct: 274 TTTENAQ 280


>sp|Q9JI39|ABCBA_MOUSE ATP-binding cassette sub-family B member 10,
mitochondrial OS=Mus musculus GN=Abcb10 PE=2 SV=1
Length = 715

Score = 30.4 bits (67), Expect = 8.8
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +1

Query: 82 LDNFMICLKLERSHLHSQVLPLLIVVAASSIACHRLQFIKSSNYIC-----KICWH 234
LD L E HL + L L+ I HRL IK++N++ KIC H
Sbjct: 622 LDEATSALDAENEHLVQEALDRLMEGRTVLIIAHRLSTIKNANFVAVLDHGKICEH 677


tr_hit_id Q6EPG5
Definition tr|Q6EPG5|Q6EPG5_ORYSJ Os02g0673100 protein OS=Oryza sativa subsp. japonica
Align length 66
Score (bit) 34.3
E-value 7.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960310|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_B05, 5'
(669 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q6EPG5|Q6EPG5_ORYSJ Os02g0673100 protein OS=Oryza sativa subs... 34 7.3
tr|A3AA17|A3AA17_ORYSJ Putative uncharacterized protein OS=Oryza... 34 7.3
tr|Q96ZH8|Q96ZH8_SULTO Putative uncharacterized protein ST1856 O... 34 9.4
tr|A2X880|A2X880_ORYSI Putative uncharacterized protein OS=Oryza... 34 9.5

>tr|Q6EPG5|Q6EPG5_ORYSJ Os02g0673100 protein OS=Oryza sativa subsp.
japonica GN=P0657H12.1 PE=2 SV=1
Length = 488

Score = 34.3 bits (77), Expect = 7.3
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = -1

Query: 252 SSLLIEMPTDFTDIIGGLDELKSMACYRRGGDDDEQG*HLAMQVRPFKLQAYHEVIQADR 73
+SLLIE+ ++ ++ L S+A +++ DDD++ M+V P + H D
Sbjct: 419 ASLLIEISARIEGVVDAVETLASLASFKQVEDDDDKKGQTEMKVHPLNVPDDH-----DA 473

Query: 72 TTHNVQ 55
+TH Q
Sbjct: 474 STHESQ 479


>tr|A3AA17|A3AA17_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_007639 PE=4 SV=1
Length = 475

Score = 34.3 bits (77), Expect = 7.3
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = -1

Query: 252 SSLLIEMPTDFTDIIGGLDELKSMACYRRGGDDDEQG*HLAMQVRPFKLQAYHEVIQADR 73
+SLLIE+ ++ ++ L S+A +++ DDD++ M+V P + H D
Sbjct: 406 ASLLIEISARIEGVVDAVETLASLASFKQVEDDDDKKGQTEMKVHPLNVPDDH-----DA 460

Query: 72 TTHNVQ 55
+TH Q
Sbjct: 461 STHESQ 466


>tr|Q96ZH8|Q96ZH8_SULTO Putative uncharacterized protein ST1856
OS=Sulfolobus tokodaii GN=ST1856 PE=4 SV=1
Length = 172

Score = 33.9 bits (76), Expect = 9.4
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3

Query: 255 FPASCPILHLVPSTWWLFLSTLQVRYPALTILSPVWRAS 371
+PAS P++ + TW +FL++ Q+ + I+ W A+
Sbjct: 76 YPASAPLMEISNGTWHIFLNSSQIANDTVKIIQAPWNAN 114


>tr|A2X880|A2X880_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_08439 PE=4 SV=1
Length = 488

Score = 33.9 bits (76), Expect = 9.5
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = -1

Query: 252 SSLLIEMPTDFTDIIGGLDELKSMACYRRGGDDDEQG*HLAMQVRPFKLQAYHEVIQADR 73
+SLLIE+ ++ ++ L S+A +++ DDD++ M+V P + H D
Sbjct: 419 ASLLIEISARIEGVVDAVETLASLASFKQVEDDDDKKGQTEMKVHPLNVPDDH-----DA 473

Query: 72 TTHNVQ 55
+TH Q
Sbjct: 474 STHENQ 479