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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960314
Clone id TST39A01NGRL0007_B09
Library
Length 452
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_B09. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GACATTCTTACTTTGCCTTCTGTGTATGTATAAGGAGAAATCTTCATACTCTTTATAATG
CAAAGTCAATTCCATATGCCTCACAATCCTCACTCCAATGCTTCATCACCTGACACAAGA
CAATCCCGCTAGCTGGTCTGATCATCAATCATGCCTTCCACTTATCACCACAATAGGATT
TACTGGGCGTGGAAGGTCTCACAATCCACAGTGCAAAGCACAAAGACCATGCATTTCTAG
AGTCAGCCGAGGGACACATCCAGGTCTGCGCCCAAGTCGAAGATCACATCATTGGAAAGC
TAGACCCACATCTTTGTCCTGCCGCAAGAGTCCCACCTTCCGCATCCGTTCTATGTATAT
GATGCCCTTCATGAGCTTTTCACGCCCTAGGAAAAAATCAGGTAGATCCAAAGGTGGTGC
TATCAGCCTTATTGCTGGCCTCTTTGCTTGCT
■■Homology search results ■■ -
sp_hit_id Q98SP7
Definition sp|Q98SP7|BBS2_DANRE Bardet-Biedl syndrome 2 protein homolog OS=Danio rerio
Align length 57
Score (bit) 31.6
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960314|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_B09, 5'
         (452 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q98SP7|BBS2_DANRE Bardet-Biedl syndrome 2 protein homolog OS=...    32   1.7  
sp|P50767|VE2_HPV21 Regulatory protein E2 OS=Human papillomaviru...    30   3.7  
sp|O33367|GYRB_MYXXA DNA gyrase subunit B OS=Myxococcus xanthus ...    30   3.7  
sp|Q9H5J0|ZBTB3_HUMAN Zinc finger and BTB domain-containing prot...    30   6.3  
sp|Q9A1E8|Y314_STRP1 UPF0348 protein SPy_0314/M5005_Spy0267 OS=S...    29   8.2  
sp|Q7CNK9|Y309_STRP8 UPF0348 protein spyM18_0309 OS=Streptococcu...    29   8.2  
sp|Q5XDT3|Y295_STRP6 UPF0348 protein M6_Spy0295 OS=Streptococcus...    29   8.2  
sp|Q1JDH1|Y285_STRPB UPF0348 protein MGAS2096_Spy0285 OS=Strepto...    29   8.2  
sp|Q1JNE5|Y266_STRPC UPF0348 protein MGAS9429_Spy0266 OS=Strepto...    29   8.2  
sp|Q1JIJ4|Y264_STRPD UPF0348 protein MGAS10270_Spy0264 OS=Strept...    29   8.2  
sp|Q1J8E9|Y262_STRPF UPF0348 protein MGAS10750_Spy0262 OS=Strept...    29   8.2  
sp|Q48V83|Y259_STRPM UPF0348 protein M28_Spy0259 OS=Streptococcu...    29   8.2  
sp|Q8P2K9|Y1630_STRP3 UPF0348 protein SpyM3_0230/SPs1630 OS=Stre...    29   8.2  
sp|A2RGC9|Y1587_STRPG UPF0348 protein SpyM51587 OS=Streptococcus...    29   8.2  
sp|Q6CG37|CS111_YARLI F-box protein COS111 OS=Yarrowia lipolytic...    29   8.2  

>sp|Q98SP7|BBS2_DANRE Bardet-Biedl syndrome 2 protein homolog
           OS=Danio rerio GN=bbs2 PE=2 SV=1
          Length = 715

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +2

Query: 86  ILTPMLHHLTQDNPASWSDHQSCLPLITTIGFTGRGRSHNPQCKAQRPCISRVSRGT 256
           I T  L+H       +   +    P +T     G+   HNP  +AQRP   R+S+ T
Sbjct: 5   IFTLKLNHKINPRMVAIGKYDGIHPCLTAATQAGKVFIHNPHTRAQRPTAHRLSQST 61


>sp|P50767|VE2_HPV21 Regulatory protein E2 OS=Human papillomavirus
           type 21 GN=E2 PE=3 SV=1
          Length = 503

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 36/130 (27%), Positives = 52/130 (40%), Gaps = 13/130 (10%)
 Frame = +2

Query: 83  TILTPMLHHLTQDNPASWSD-HQSCLPLITTIGFTGRGRSHNPQCKAQRPCISRVSRGTH 259
           T+  P+      D+P   +D + S     TT   T R  S   Q +         ++G  
Sbjct: 193 TVFAPVTSSTPPDSPGGQADSNTSSTTPATTTDSTSRLSSTRKQSQQTN------TKGRR 246

Query: 260 PGLRPSRRSH-----HWKARPTSLSCRKSPT-FRIRSMYMMPFMSFSRPRKKSGRS---- 409
            G RPS R+      H + R  S S  +S +  R+RS       S+SR R +S       
Sbjct: 247 YGRRPSSRTRRTTQTHQRRRSRSKSRSRSRSRSRLRSRSRSRSRSYSRSRSQSSDQPQYR 306

Query: 410 --KGGAISLI 433
              GG +SLI
Sbjct: 307 FRSGGQVSLI 316


>sp|O33367|GYRB_MYXXA DNA gyrase subunit B OS=Myxococcus xanthus
           GN=gyrB PE=3 SV=1
          Length = 815

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = -2

Query: 250 SADSRNAWSLCFALWIVRPSTPSKSYCGDKWKA*LMIRPASGIVLCQVMKHWS 92
           SA  R  W+ C   W   PST  +S+C    +     R  S    C+    WS
Sbjct: 648 SAACRTCWAACATSWCRTPSTTPRSWCSTPTRMEPCGRRCSTTPSCRRRSTWS 700


>sp|Q9H5J0|ZBTB3_HUMAN Zinc finger and BTB domain-containing protein
           3 OS=Homo sapiens GN=ZBTB3 PE=2 SV=1
          Length = 574

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +2

Query: 233 ISRVSRGTHPGLRPSRRSHHWKARPTSLSCRKSPTFR 343
           +S  SRGT P L  +  S HW       S   SPT R
Sbjct: 196 LSSTSRGTQPSLASAETSGHWGKGEWKGSAAPSPTVR 232


>sp|Q9A1E8|Y314_STRP1 UPF0348 protein SPy_0314/M5005_Spy0267
           OS=Streptococcus pyogenes serotype M1 GN=SPy_0314 PE=3
           SV=1
          Length = 368

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 164 ITTIGFTGRGRSHNPQCKAQRPCISRVSRGT 256
           I  +GFT +G++H  + K  RP I+R+   T
Sbjct: 301 IHILGFTSKGQAHLKKLKKSRPLITRIGAET 331


>sp|Q7CNK9|Y309_STRP8 UPF0348 protein spyM18_0309 OS=Streptococcus
           pyogenes serotype M18 GN=spyM18_0309 PE=3 SV=1
          Length = 368

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 164 ITTIGFTGRGRSHNPQCKAQRPCISRVSRGT 256
           I  +GFT +G++H  + K  RP I+R+   T
Sbjct: 301 IHILGFTSKGQAHLKKLKKSRPLITRIGAET 331


>sp|Q5XDT3|Y295_STRP6 UPF0348 protein M6_Spy0295 OS=Streptococcus
           pyogenes serotype M6 GN=M6_Spy0295 PE=3 SV=1
          Length = 368

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 164 ITTIGFTGRGRSHNPQCKAQRPCISRVSRGT 256
           I  +GFT +G++H  + K  RP I+R+   T
Sbjct: 301 IHILGFTSKGQAHLKKLKKSRPLITRIGAET 331


>sp|Q1JDH1|Y285_STRPB UPF0348 protein MGAS2096_Spy0285
           OS=Streptococcus pyogenes serotype M12 (strain MGAS2096)
           GN=MGAS2096_Spy0285 PE=3 SV=1
          Length = 368

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 164 ITTIGFTGRGRSHNPQCKAQRPCISRVSRGT 256
           I  +GFT +G++H  + K  RP I+R+   T
Sbjct: 301 IHILGFTSKGQAHLKKLKKSRPLITRIGAET 331


>sp|Q1JNE5|Y266_STRPC UPF0348 protein MGAS9429_Spy0266
           OS=Streptococcus pyogenes serotype M12 (strain MGAS9429)
           GN=MGAS9429_Spy0266 PE=3 SV=1
          Length = 368

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 164 ITTIGFTGRGRSHNPQCKAQRPCISRVSRGT 256
           I  +GFT +G++H  + K  RP I+R+   T
Sbjct: 301 IHILGFTSKGQAHLKKLKKSRPLITRIGAET 331


>sp|Q1JIJ4|Y264_STRPD UPF0348 protein MGAS10270_Spy0264
           OS=Streptococcus pyogenes serotype M2 (strain MGAS10270)
           GN=MGAS10270_Spy0264 PE=3 SV=1
          Length = 368

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 164 ITTIGFTGRGRSHNPQCKAQRPCISRVSRGT 256
           I  +GFT +G++H  + K  RP I+R+   T
Sbjct: 301 IHILGFTSKGQAHLKKLKKSRPLITRIGAET 331
tr_hit_id B5I6F9
Definition tr|B5I6F9|B5I6F9_9ACTO Transcriptional regulator OS=Streptomyces sviceus ATCC 29083
Align length 72
Score (bit) 37.4
E-value 0.38
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960314|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_B09, 5'
         (452 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B5I6F9|B5I6F9_9ACTO Transcriptional regulator OS=Streptomyces...    37   0.38 
tr|Q82441|Q82441_HTLV2 Pol polyprotein (Fragment) OS=Human T-cel...    35   2.5  
tr|B2JWN5|B2JWN5_BURP8 Conserved secreted protein with internal ...    34   3.2  
tr|B1LK13|B1LK13_ECOSM ISL3 family transposase OS=Escherichia co...    33   7.1  
tr|A5AKL7|A5AKL7_VITVI Putative uncharacterized protein OS=Vitis...    33   7.1  
tr|B3MLR8|B3MLR8_DROAN GF15036 OS=Drosophila ananassae GN=GF1503...    33   7.1  
tr|A7CER9|A7CER9_BURPI Thioredoxin OS=Ralstonia pickettii 12D GN...    33   9.3  

>tr|B5I6F9|B5I6F9_9ACTO Transcriptional regulator OS=Streptomyces
           sviceus ATCC 29083 GN=SSEG_07294 PE=4 SV=1
          Length = 304

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = +2

Query: 239 RVSRGTHPGLRPSRRSH--HWKARPTSLSCRKSPTFRIRSMYMM--PFMSFSRPRKKSGR 406
           RV+R  HPGLRP  RS+  +W+A  T    R  PT R   +  +  PF    R   + G 
Sbjct: 23  RVTRPWHPGLRPYLRSYVGYWEAVATPYEARLVPTGRATLLISLAEPFSQVRRLGVRGGG 82

Query: 407 SKGGAISLIAGL 442
           S G   SL+ GL
Sbjct: 83  S-GRIGSLVVGL 93


>tr|Q82441|Q82441_HTLV2 Pol polyprotein (Fragment) OS=Human T-cell
           leukemia virus 2 GN=pol PE=4 SV=1
          Length = 982

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +2

Query: 272 PSRRSHHWKARPTSLSCRKSPTFRIR--SMYMMPFMSFSRPRKKSGRSKGGAIS 427
           P +  HHWK RPT++     P+ R +  S+      +  RPR  S  + GG IS
Sbjct: 63  PQQMDHHWKRRPTTMPGASIPSRRSQPPSIAANSHSTHHRPRTPSPTAPGGPIS 116


>tr|B2JWN5|B2JWN5_BURP8 Conserved secreted protein with internal
           repeats OS=Burkholderia phymatum (strain DSM 17167 /
           STM815) GN=Bphy_6331 PE=3 SV=1
          Length = 165

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 21/83 (25%), Positives = 37/83 (44%)
 Frame = +2

Query: 71  SICLTILTPMLHHLTQDNPASWSDHQSCLPLITTIGFTGRGRSHNPQCKAQRPCISRVSR 250
           +ICL + +PMLH  ++D  AS S  ++  P   T GF         Q K  +  + ++ +
Sbjct: 9   AICLALSSPMLHAASKDPAASQSASKTQSP--DTAGFDKNLARFQEQMKTMQAQMDQIRK 66

Query: 251 GTHPGLRPSRRSHHWKARPTSLS 319
              P  R      HW    ++++
Sbjct: 67  THDPKERQKLLQQHWATMQSAMT 89


>tr|B1LK13|B1LK13_ECOSM ISL3 family transposase OS=Escherichia coli
           (strain SMS-3-5 / SECEC) GN=EcSMS35_2272 PE=4 SV=1
          Length = 539

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = +2

Query: 218 AQRPCISRVSRGTHPGLRPSRRSHHWKARPTSLSCRKSPTFRIRSMYMMPFMSFSRPRKK 397
           A+ P +SRVSR   P  R  R   ++ +R  SL C K P  +I    ++ F    + + K
Sbjct: 404 ARLPSVSRVSRWLMPW-RIIRGEENYASRFISLMCEKEPELKIAQQLVLEFYRILKTQNK 462

Query: 398 S 400
           S
Sbjct: 463 S 463


>tr|A5AKL7|A5AKL7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_044064 PE=4 SV=1
          Length = 328

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +2

Query: 185 GRGRSHNPQCKAQRPCISRVSRGTHPGLRPSRRSHHWKARPTSLSCRKSPTF 340
           G GR  NP C++Q    S  S  TH   RP RRS      P + S  ++  F
Sbjct: 12  GEGRGVNPHCRSQTQLRSIRSTQTHLRRRPFRRSPSSPTSPAARSTSRNELF 63


>tr|B3MLR8|B3MLR8_DROAN GF15036 OS=Drosophila ananassae GN=GF15036
            PE=4 SV=1
          Length = 3124

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
 Frame = +2

Query: 29   YKEKSSYSL*CKVNSICLTIL--TPMLHHLTQDNPASWSDH---QSCLPLITTIGFTG-- 187
            +++ S+Y    + NSI  ++   TP++HH  Q+     SD+    S LPL T +G  G  
Sbjct: 2883 FRDNSTYGGGTRANSISTSVAEDTPIIHHTDQEVDEGGSDYYGNASTLPLRTDLGGGGAQ 2942

Query: 188  ----RGRSHNPQCKAQRPCISRVSRGTHPGLRPSRRS 286
                RG+         +  +    R +H    P R S
Sbjct: 2943 GGGRRGQPGLAFLSELKQNLPEYQRSSHSSFMPQRSS 2979


>tr|A7CER9|A7CER9_BURPI Thioredoxin OS=Ralstonia pickettii 12D
           GN=Rpic12DDRAFT_3671 PE=4 SV=1
          Length = 269

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -2

Query: 373 HEGHHIHRTDAEGGTLAAGQR 311
           H+ HHIHR DA G  +AAG R
Sbjct: 130 HQAHHIHRPDALGDDIAAGPR 150