DK960317
Clone id TST39A01NGRL0007_B12
Library
Length 649
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_B12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GGCACCAGTTGCTTTCTTTTCAATCTTCCCGAATCCCTTTCCAATTTGTTGGGTTGTGGA
ATGTGGACTGGGGAATACCCATGTGAGTGCCAAGAGGTGTCCATGTGTGTGTATATTGTG
TCAATCATAAGCGATGTGGGTGGGTACTGCAGGACGAGAGGGTCCGGACTCCCTTCCTCT
GCTGTCAAAAGTGGCAAGGCTTTGTCCTCCCTCTCCACTACTCTCAAGCCACAGAGAGAG
CTTTCACCTTTTCTTTCCCTTTTGGATGTGCATTTATCTGGCTTGTTGGTGTGTTTGCCC
AACCGAACACAATCAACTTGAAGCAAGCATCTGGTTCTTTGTGTGCGCGCACTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCGACTCTCTCTCGATCCTCTTCTCCTCTCTGTGTACTTG
TTTCCCCTCTTTTCCAAGTCTCTTTCATTAAAATTTTCTTGTTTCTATCCCAGCGCTCTT
GTTCGTTCTCTGGTTTGCCTTCTCATTTTGGGCATTTTTGGATTTGGGCCGTCAATTCTC
TTCACTTTGTGCATAGCCCAGCTGTCCTTCTTCTCTTCTATTTGCTTAATCTTACTCTGT
TTTTCTCTGTTTTTTGTTAGGGTTTCGAAGCTAGAGTATATAATCCGTC
■■Homology search results ■■ -
sp_hit_id Q54J55
Definition sp|Q54J55|MYBX_DICDI Myb-like protein X OS=Dictyostelium discoideum
Align length 32
Score (bit) 26.2
E-value 1.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960317|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_B12, 5'
(649 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q54J55|MYBX_DICDI Myb-like protein X OS=Dictyostelium discoid... 26 1.1
sp|Q9BWM5|ZN416_HUMAN Zinc finger protein 416 OS=Homo sapiens GN... 31 4.9
sp|Q75T13|PGAP1_HUMAN GPI inositol-deacylase OS=Homo sapiens GN=... 31 4.9
sp|A8LQM0|SYY_DINSH Tyrosyl-tRNA synthetase OS=Dinoroseobacter s... 31 6.4
sp|Q765A7|PGAP1_RAT GPI inositol-deacylase OS=Rattus norvegicus ... 31 6.4
sp|Q3U492|CRIM2_MOUSE Cysteine-rich motor neuron 2 protein OS=Mu... 31 6.4

>sp|Q54J55|MYBX_DICDI Myb-like protein X OS=Dictyostelium discoideum
GN=mybX PE=3 SV=1
Length = 1620

Score = 26.2 bits (56), Expect(2) = 1.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1

Query: 502 EGKPENEQERWDRNKKILMKETWKRGETSTQR 407
E + ENE E+ + NKK KE K E ++
Sbjct: 720 ENEKENENEKENENKKEKEKENKKENENENEK 751



Score = 25.0 bits (53), Expect(2) = 1.1
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = -2

Query: 624 NPNKKQRKTE*D*ANRREEGQLGYAQSEEN*RPKSKNAQNEKANQRTNKS 475
N N+KQ K + + + ++ + G + E K +NEK N+ ++
Sbjct: 676 NENEKQDKDKENEKEKEDKTENGNEKENEKENEKENEKENEKENENEKEN 725


>sp|Q9BWM5|ZN416_HUMAN Zinc finger protein 416 OS=Homo sapiens
GN=ZNF416 PE=2 SV=1
Length = 594

Score = 31.2 bits (69), Expect = 4.9
Identities = 21/57 (36%), Positives = 27/57 (47%)
Frame = +1

Query: 67 TGEYPCECQEVSMCVYIVSIISDVGGYCRTRGSGLPSSAVKSGKALSSLSTTLKPQR 237
TGE P EC E C S S++ +CR P + GKA S ST ++ QR
Sbjct: 321 TGERPYECGE---CGKSFSQSSNLIEHCRIHTGERPYECDECGKAFGSKSTLVRHQR 374


>sp|Q75T13|PGAP1_HUMAN GPI inositol-deacylase OS=Homo sapiens
GN=PGAP1 PE=2 SV=1
Length = 922

Score = 31.2 bits (69), Expect = 4.9
Identities = 24/52 (46%), Positives = 29/52 (55%)
Frame = +1

Query: 88 CQEVSMCVYIVSIISDVGGYCRTRGSGLPSSAVKSGKALSSLSTTLKPQREL 243
CQ SMC ++S+I + G C SGL SSA S + LSSL LK EL
Sbjct: 674 CQ--SMCFPLISLILFLFGTCTAYWSGLLSSA--SVRLLSSLWLALKRPSEL 721


>sp|A8LQM0|SYY_DINSH Tyrosyl-tRNA synthetase OS=Dinoroseobacter
shibae (strain DFL 12) GN=tyrS PE=3 SV=1
Length = 417

Score = 30.8 bits (68), Expect = 6.4
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = -2

Query: 186 DSRGRESGPSRPAVPTHIAYD*HNIHTH-GHLL---ALTWVFPSPHSTTQQIGKGFGKI 22
D +G + S+ VPT+I YD H GHLL L W+ + H +G G K+
Sbjct: 24 DYQGLDEAMSKGVVPTYIGYDATAASLHVGHLLNIMMLRWLQKTGHKPITLMGGGTTKV 82


>sp|Q765A7|PGAP1_RAT GPI inositol-deacylase OS=Rattus norvegicus
GN=Pgap1 PE=1 SV=1
Length = 922

Score = 30.8 bits (68), Expect = 6.4
Identities = 23/48 (47%), Positives = 27/48 (56%)
Frame = +1

Query: 100 SMCVYIVSIISDVGGYCRTRGSGLPSSAVKSGKALSSLSTTLKPQREL 243
SMC +VS+I + G C SGL SSA S + LSSL LK EL
Sbjct: 676 SMCFPLVSLILFLFGTCTAYWSGLLSSA--SVQLLSSLWLALKRPAEL 721


>sp|Q3U492|CRIM2_MOUSE Cysteine-rich motor neuron 2 protein OS=Mus
musculus GN=Crim2 PE=1 SV=1
Length = 1550

Score = 30.8 bits (68), Expect = 6.4
Identities = 24/87 (27%), Positives = 32/87 (36%)
Frame = +2

Query: 26 FPNPFPICWVVECGLGNTHVSAKRCPCVCILCQS*AMWVGTAGREGPDSLPLLSKVARLC 205
FP+P C + C GN A+RCP + C + G + PD+ C
Sbjct: 617 FPHPTDPCRLCRCLSGNVQCLARRCP--PLSCPQPVLTPGDCCPQCPDA-------PADC 667

Query: 206 PPSPLLSSHRESFHLFFPFWMCIYLAC 286
P S + R H F P C C
Sbjct: 668 PQSGNMVPVRHQEHFFQPGDPCSRCLC 694


tr_hit_id Q5U4A6
Definition tr|Q5U4A6|Q5U4A6_MOUSE Zinc finger protein 760 OS=Mus musculus
Align length 50
Score (bit) 38.9
E-value 0.27
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960317|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_B12, 5'
(649 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q5U4A6|Q5U4A6_MOUSE Zinc finger protein 760 OS=Mus musculus G... 39 0.27

>tr|Q5U4A6|Q5U4A6_MOUSE Zinc finger protein 760 OS=Mus musculus
GN=Zfp760 PE=2 SV=1
Length = 666

Score = 38.9 bits (89), Expect = 0.27
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1

Query: 67 TGEYPCECQEVSMCVYIVSIISDVGGYCRTRGSGLPSSAVKSGKALSSLS 216
T E P +C+E S C Y++S++ +CRT P + GK LS LS
Sbjct: 427 TDEKPYKCEECSKCFYVLSLLK---SHCRTHTGEKPYKCEECGKCLSQLS 473