DK960319 |
Clone id |
TST39A01NGRL0007_B14 |
Library |
TST39 |
Length |
612 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_B14. 5' end sequence. |
Accession |
DK960319 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
CAAGGCCATTGTTGATGTTCACTTCCATAAGGATTGGCAAAGAAGAGTCAAGACTTGGTT CAACCAACCAGCTAGACACGAAAGAAGAAGAAATGCCAGAGCTTTAAAGGCTGTTCGTGT TTTCCCTCGCCCAGTTGCTGGTGATTTGAGACCTTTAGTTCACGCCCCATCACACAAATA CAACTCCAGAATCAGAATCGGACGTGGTTTCAGCTTAGAAGAATTAAAGGAAGCCGGTTT GAACGTCAACTCTGCCAAGACCATCGGTATCTCCATCGATTACAGAAGAAGAAACAAATC TGACAGATCATTGAAAACCAATGTTCAAAGAATCAAGGAATACAGATCCAAGTTAGTTTT GTTCCCAAAGAACAACAAGAAGGTCAAGACAGGAGAAGCCACAAAGGAAGAACAATCAAA GGTTTCCCAAGTCCGTGGTGACGTTTTGCCTGCTCGTGAAGGTGGTGCTAAATTAGAAGT CGTCAGAATTGCCGATTTAGACTCTAAATCATCTGCCTACACATTACTCAGAAAGGCCAG AGCTGATGCTAGATTGGTTGGTGTTAGAGAAAGAAGAGCTAAGGAAAAGGCTGAACAAGA AGCCAACAAGAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q90Z10 |
Definition |
sp|Q90Z10|RL13_DANRE 60S ribosomal protein L13 OS=Danio rerio |
Align length |
186 |
Score (bit) |
204.0 |
E-value |
3.0e-52 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q56FE7 |
Definition |
tr|Q56FE7|Q56FE7_LYSTE 60S ribosomal protein L13 OS=Lysiphlebus testaceipes |
Align length |
183 |
Score (bit) |
212.0 |
E-value |
1.0e-53 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960319|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0007_B14, 5' (612 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q56FE7|Q56FE7_LYSTE 60S ribosomal protein L13 OS=Lysiphlebus ... 212 1e-53 tr|A2IAC5|A2IAC5_9NEOP 60S ribosomal protein L13 OS=Xenopsylla c... 208 2e-52 tr|A2I3Z1|A2I3Z1_MACHI 60S ribosomal protein L13 OS=Maconellicoc... 207 5e-52 tr|Q4GXI9|Q4GXI9_9COLE 60S ribosomal protein L13 OS=Sphaerius sp... 205 1e-51 tr|Q6DJN5|Q6DJN5_XENLA 60S ribosomal protein L13 OS=Xenopus laev... 203 6e-51 tr|B5DGD9|B5DGD9_SALSA Ribosomal protein L13 OS=Salmo salar GN=r... 203 7e-51 tr|Q4GXJ0|Q4GXJ0_AGRLI 60S ribosomal protein L13 OS=Agriotes lin... 202 1e-50 tr|Q29NF8|Q29NF8_DROPS 60S ribosomal protein L13 OS=Drosophila p... 202 2e-50 tr|B4G7T8|B4G7T8_DROPE GL18951 OS=Drosophila persimilis GN=GL189... 202 2e-50 tr|B5XD30|B5XD30_SALSA 60S ribosomal protein L13 OS=Salmo salar ... 201 3e-50 tr|Q8AVQ1|Q8AVQ1_XENLA 60S ribosomal protein L13 OS=Xenopus laev... 201 4e-50 tr|B7FNN5|B7FNN5_DROME LD24350p OS=Drosophila melanogaster GN=Rp... 201 4e-50 tr|Q0GN70|Q0GN70_DICLA 60S ribosomal protein L13 OS=Dicentrarchu... 200 5e-50 tr|Q6XIL3|Q6XIL3_DROYA 60S ribosomal protein L13 (Fragment) OS=D... 200 5e-50 tr|Q0PXV2|Q0PXV2_DIACI 60S ribosomal protein L13 OS=Diaphorina c... 200 5e-50 tr|B4Q8B3|B4Q8B3_DROSI GD23645 OS=Drosophila simulans GN=GD23645... 200 5e-50 tr|B4HWE3|B4HWE3_DROSE GM17848 OS=Drosophila sechellia GN=GM1784... 200 5e-50 tr|B3N907|B3N907_DROER GG10074 OS=Drosophila erecta GN=GG10074 P... 200 5e-50 tr|A9U376|A9U376_PHYPA 60S ribosomal protein L13 OS=Physcomitrel... 200 6e-50 tr|B4MX35|B4MX35_DROWI GK15580 OS=Drosophila willistoni GN=GK155... 200 6e-50 tr|Q6P639|Q6P639_XENTR 60S ribosomal protein L13 OS=Xenopus trop... 199 1e-49 tr|Q4SIB7|Q4SIB7_TETNG 60S ribosomal protein L13 OS=Tetraodon ni... 199 1e-49 tr|A8E676|A8E676_9BILA 60S ribosomal protein L13 OS=Spadella cep... 198 2e-49 tr|B7UEB5|B7UEB5_DROSL Ribosomal protein L13 OS=Drosophila silve... 198 2e-49 tr|B4KH38|B4KH38_DROMO GI17580 OS=Drosophila mojavensis GN=GI175... 198 2e-49 tr|A9ZT88|A9ZT88_SOLSE Ribosomal protein L13 OS=Solea senegalens... 197 3e-49 tr|B4M9F1|B4M9F1_DROVI GJ17923 OS=Drosophila virilis GN=GJ17923 ... 197 3e-49 tr|B4JCH0|B4JCH0_DROGR GH11063 OS=Drosophila grimshawi GN=GH1106... 197 3e-49 tr|A8K4C8|A8K4C8_HUMAN 60S ribosomal protein L13 OS=Homo sapiens... 197 3e-49 tr|B3MPC5|B3MPC5_DROAN GF15733 OS=Drosophila ananassae GN=GF1573... 197 4e-49
>tr|Q56FE7|Q56FE7_LYSTE 60S ribosomal protein L13 OS=Lysiphlebus testaceipes GN=RpL13 PE=2 SV=1 Length = 221
Score = 212 bits (540), Expect = 1e-53 Identities = 106/183 (57%), Positives = 136/183 (74%), Gaps = 1/183 (0%) Frame = +2
Query: 20 HFHKDWQRRVKTWFNQPARHERRRNARALKAVRVFPRPVAGDLRPLVHAPSHKYNSRIRI 199 HFHKDWQ V+TWFNQPAR RR+ R KA V PRPV LRP+VH P+ +Y++++R Sbjct: 12 HFHKDWQNHVRTWFNQPARKYRRKQNRVKKARSVAPRPV-NSLRPVVHCPTFRYHTKVRA 70
Query: 200 GRGFSLEELKEAGLNVNSAKTIGISIDYRRRNKSDRSLKTNVQRIKEYRSKLVLFPKNNK 379 GRGF+LEEL+ AGLN N AKTIGI++D RRRNKS S++TN QR+KEYR+KL+LFP N K Sbjct: 71 GRGFTLEELRSAGLNKNFAKTIGIAVDSRRRNKSVESIQTNAQRLKEYRAKLILFPINAK 130
Query: 380 KVKTGEATKEEQSKVSQVRGDVLPAREGG-AKLEVVRIADLDSKSSAYTLLRKARADARL 556 K K G++T+EE +Q++GDV+P R AK + I + + K SAY LR+ARADARL Sbjct: 131 KPKKGDSTEEECKVANQIKGDVMPIRRSAPAKSKARPITEEEKKFSAYVALRQARADARL 190
Query: 557 VGV 565 VG+ Sbjct: 191 VGI 193
>tr|A2IAC5|A2IAC5_9NEOP 60S ribosomal protein L13 OS=Xenopsylla cheopis PE=2 SV=1 Length = 221
Score = 208 bits (530), Expect = 2e-52 Identities = 101/183 (55%), Positives = 139/183 (75%), Gaps = 1/183 (0%) Frame = +2
Query: 20 HFHKDWQRRVKTWFNQPARHERRRNARALKAVRVFPRPVAGDLRPLVHAPSHKYNSRIRI 199 HFHKDWQR VKTWFNQPAR RRR R KA +FPRP +G LRP+VH P+ +Y++++R Sbjct: 12 HFHKDWQRFVKTWFNQPARKIRRRQNRIKKARAIFPRPASGALRPIVHCPTVRYHTKVRA 71
Query: 200 GRGFSLEELKEAGLNVNSAKTIGISIDYRRRNKSDRSLKTNVQRIKEYRSKLVLFPKN-N 376 GRGF+LEE+K AGL+ A++IGI++D RRRNKS SL+ NVQR+KEYRSKL+LFP++ Sbjct: 72 GRGFTLEEVKGAGLSAGFARSIGIALDRRRRNKSVESLQKNVQRLKEYRSKLILFPRHEK 131
Query: 377 KKVKTGEATKEEQSKVSQVRGDVLPAREGGAKLEVVRIADLDSKSSAYTLLRKARADARL 556 KK++ GEAT++E +Q++G V+P ++ + + + + + K SA+T LRKARAD RL Sbjct: 132 KKLRKGEATEDECKVATQLQGIVMPIKQTAVRTKARVVTEDEKKFSAFTALRKARADQRL 191
Query: 557 VGV 565 VG+ Sbjct: 192 VGI 194
>tr|A2I3Z1|A2I3Z1_MACHI 60S ribosomal protein L13 OS=Maconellicoccus hirsutus PE=2 SV=1 Length = 224
Score = 207 bits (526), Expect = 5e-52 Identities = 97/183 (53%), Positives = 142/183 (77%), Gaps = 1/183 (0%) Frame = +2
Query: 20 HFHKDWQRRVKTWFNQPARHERRRNARALKAVRVFPRPVAGDLRPLVHAPSHKYNSRIRI 199 HFHKDWQ+ +KTWFNQPAR RR AR KA V PRP AG LRP+VH P+ +Y++++R Sbjct: 13 HFHKDWQKYIKTWFNQPARKFRRHKARVQKAKSVAPRPAAGPLRPIVHCPTVRYHTKVRP 72
Query: 200 GRGFSLEELKEAGLNVNSAKTIGISIDYRRRNKSDRSLKTNVQRIKEYRSKLVLFPKN-N 376 GRGF+LEE+K AGL+ A++IGI++D+RRRNKS SL+ NVQR+KEY+SKL+LFPK+ N Sbjct: 73 GRGFTLEEIKAAGLSKQFARSIGIAVDHRRRNKSVESLQVNVQRLKEYKSKLILFPKHAN 132
Query: 377 KKVKTGEATKEEQSKVSQVRGDVLPAREGGAKLEVVRIADLDSKSSAYTLLRKARADARL 556 KK++ GEA++EE+ SQ++G+VLP ++G ++ I + + +A++++++AR DA+L Sbjct: 133 KKLRKGEASEEERKVASQLKGEVLPIKQGKQLVKPRAITAGEKRFNAFSVVKQARVDAKL 192
Query: 557 VGV 565 G+ Sbjct: 193 FGI 195
>tr|Q4GXI9|Q4GXI9_9COLE 60S ribosomal protein L13 OS=Sphaerius sp. APV-2005 GN=rpL13e PE=2 SV=1 Length = 218
Score = 205 bits (522), Expect = 1e-51 Identities = 99/182 (54%), Positives = 133/182 (73%) Frame = +2
Query: 20 HFHKDWQRRVKTWFNQPARHERRRNARALKAVRVFPRPVAGDLRPLVHAPSHKYNSRIRI 199 HFHK+WQR VKTWFNQPAR RR+ R KA V PRP G LRP+V P+ +Y++++R Sbjct: 13 HFHKNWQRFVKTWFNQPARKLRRKQKRVKKARAVAPRPAKGPLRPVVRCPTFRYHTKVRP 72
Query: 200 GRGFSLEELKEAGLNVNSAKTIGISIDYRRRNKSDRSLKTNVQRIKEYRSKLVLFPKNNK 379 GRGF+L+ELK AGLN A+TIG+S+DYRRRNKS SL+ N QR+KEYRSKL+LFP N+K Sbjct: 73 GRGFTLQELKAAGLNPVFARTIGVSVDYRRRNKSVESLQQNAQRLKEYRSKLILFPLNDK 132
Query: 380 KVKTGEATKEEQSKVSQVRGDVLPAREGGAKLEVVRIADLDSKSSAYTLLRKARADARLV 559 K++ GE+T ++ + +Q+ +V+P + K + + + K SA+ LRKARADARLV Sbjct: 133 KIRKGESTLDKCAVATQLTAEVMPVHQPAVKAQARVPTNKEKKFSAFAYLRKARADARLV 192
Query: 560 GV 565 G+ Sbjct: 193 GI 194
>tr|Q6DJN5|Q6DJN5_XENLA 60S ribosomal protein L13 OS=Xenopus laevis GN=rpl13 PE=2 SV=1 Length = 211
Score = 203 bits (517), Expect = 6e-51 Identities = 100/186 (53%), Positives = 133/186 (71%) Frame = +2
Query: 8 IVDVHFHKDWQRRVKTWFNQPARHERRRNARALKAVRVFPRPVAGDLRPLVHAPSHKYNS 187 I+ HFHKDWQRRV TWFNQPAR RRR AR +KA V PRPV+G +RP+V P+++Y++ Sbjct: 9 ILKPHFHKDWQRRVTTWFNQPARKIRRRKARQVKARLVAPRPVSGPVRPVVRCPTNRYHT 68
Query: 188 RIRIGRGFSLEELKEAGLNVNSAKTIGISIDYRRRNKSDRSLKTNVQRIKEYRSKLVLFP 367 ++R GRGFSLEELK AG+N A+TIGIS+D RRRNKS L+TNVQR+KEYRSKL++FP Sbjct: 69 KVRAGRGFSLEELKAAGINKKVARTIGISVDPRRRNKSTEGLQTNVQRLKEYRSKLIVFP 128
Query: 368 KNNKKVKTGEATKEEQSKVSQVRGDVLPAREGGAKLEVVRIADLDSKSSAYTLLRKARAD 547 + K G++T EE +Q++G ++P R K + I + + A+ LR ARA+ Sbjct: 129 RKPSAPKKGDSTAEELKLATQLKGPIMPIRSVYKKEKARVITEEEKNFKAFASLRMARAN 188
Query: 548 ARLVGV 565 ARL G+ Sbjct: 189 ARLFGI 194
>tr|B5DGD9|B5DGD9_SALSA Ribosomal protein L13 OS=Salmo salar GN=rpl13 PE=2 SV=1 Length = 211
Score = 203 bits (516), Expect = 7e-51 Identities = 98/186 (52%), Positives = 135/186 (72%) Frame = +2
Query: 8 IVDVHFHKDWQRRVKTWFNQPARHERRRNARALKAVRVFPRPVAGDLRPLVHAPSHKYNS 187 +++ HFHKDWQ RV+TWFNQPAR RRR AR +KA R+ PRPVAG LRP V P+ +Y++ Sbjct: 9 LLNPHFHKDWQTRVRTWFNQPARKTRRRKARQIKARRIAPRPVAGPLRPQVRCPTIRYHT 68
Query: 188 RIRIGRGFSLEELKEAGLNVNSAKTIGISIDYRRRNKSDRSLKTNVQRIKEYRSKLVLFP 367 ++R GRGF+LEELK AG++ +A+TIGIS+D RRRN+S SL+ NVQR+KEYRSKL+LFP Sbjct: 69 KVRAGRGFTLEELKAAGIHKKTARTIGISVDTRRRNRSSESLQANVQRLKEYRSKLILFP 128
Query: 368 KNNKKVKTGEATKEEQSKVSQVRGDVLPAREGGAKLEVVRIADLDSKSSAYTLLRKARAD 547 + K G++T+EE +Q+ G V+P + K + I++ + A+ LR ARA+ Sbjct: 129 RKASAPKKGDSTEEELKMATQLSGAVMPIKNVHKKEKARVISEDEKNFKAFASLRMARAN 188
Query: 548 ARLVGV 565 ARL G+ Sbjct: 189 ARLFGI 194
>tr|Q4GXJ0|Q4GXJ0_AGRLI 60S ribosomal protein L13 OS=Agriotes lineatus GN=rpL13e PE=2 SV=1 Length = 220
Score = 202 bits (515), Expect = 1e-50 Identities = 105/185 (56%), Positives = 135/185 (72%), Gaps = 3/185 (1%) Frame = +2
Query: 20 HFHKDWQRRVKTWFNQPARHERRRNARALKAVRVFPRPVAGDLRPLVHAPSHKYNSRIRI 199 HFHKDWQR VKTWFNQPAR RR+ R KA + PRP AG LRP+V P+ +Y++++R Sbjct: 13 HFHKDWQRFVKTWFNQPARKFRRKQKRIKKARAIAPRPAAGPLRPVVRCPTIRYHTKVRA 72
Query: 200 GRGFSLEELKEAGLNVNSAKTIGISIDYRRRNKSDRSLKTNVQRIKEYRSKLVLFP-KNN 376 GRGF+L+ELK A LN A++IGI+IDYRRRNKS S++ N QR+KEYRSKL+LFP N Sbjct: 73 GRGFTLQELKAASLNAAFARSIGIAIDYRRRNKSVESIQVNAQRLKEYRSKLILFPVHNK 132
Query: 377 KKVKTGEATKEEQSKVSQVRGDVLPAREG-GAKLEVVRIADLDSKS-SAYTLLRKARADA 550 KK++ GEAT+EE+ SQ+ G+V+P + K R+ + K SA+T LRKARADA Sbjct: 133 KKLRAGEATEEERKVASQLVGEVIPITQVLXMKKPKARVPTEEEKXFSAFTTLRKARADA 192
Query: 551 RLVGV 565 RLVG+ Sbjct: 193 RLVGI 197
>tr|Q29NF8|Q29NF8_DROPS 60S ribosomal protein L13 OS=Drosophila pseudoobscura pseudoobscura GN=GA18330 PE=3 SV=1 Length = 217
Score = 202 bits (513), Expect = 2e-50 Identities = 97/186 (52%), Positives = 132/186 (70%) Frame = +2
Query: 8 IVDVHFHKDWQRRVKTWFNQPARHERRRNARALKAVRVFPRPVAGDLRPLVHAPSHKYNS 187 I + H+HK WQR VKTWFNQPAR RR R KA VFPRP +G LRP+V P+ +Y++ Sbjct: 8 IPNQHYHKWWQRHVKTWFNQPARKHRRHENRVKKAKAVFPRPASGALRPVVRCPTIRYHT 67
Query: 188 RIRIGRGFSLEELKEAGLNVNSAKTIGISIDYRRRNKSDRSLKTNVQRIKEYRSKLVLFP 367 ++R GRGF+LEELK AG++ AKTIGI++D+RR+NKS S + N+QR+KEYRSKL+LFP Sbjct: 68 KLRTGRGFTLEELKGAGVSAKFAKTIGIAVDFRRKNKSLESRQRNIQRLKEYRSKLILFP 127
Query: 368 KNNKKVKTGEATKEEQSKVSQVRGDVLPAREGGAKLEVVRIADLDSKSSAYTLLRKARAD 547 N KK++ GE++ EE +Q+RG ++P + +E + + K A+ LRKAR D Sbjct: 128 INEKKIRKGESSVEECKLATQLRGPIMPIKAEKPVVEFREVTKDEKKFKAFATLRKARTD 187
Query: 548 ARLVGV 565 ARLVG+ Sbjct: 188 ARLVGI 193
>tr|B4G7T8|B4G7T8_DROPE GL18951 OS=Drosophila persimilis GN=GL18951 PE=4 SV=1 Length = 217
Score = 202 bits (513), Expect = 2e-50 Identities = 97/186 (52%), Positives = 132/186 (70%) Frame = +2
Query: 8 IVDVHFHKDWQRRVKTWFNQPARHERRRNARALKAVRVFPRPVAGDLRPLVHAPSHKYNS 187 I + H+HK WQR VKTWFNQPAR RR R KA VFPRP +G LRP+V P+ +Y++ Sbjct: 8 IPNQHYHKWWQRHVKTWFNQPARKHRRHENRVKKAKAVFPRPASGALRPVVRCPTIRYHT 67
Query: 188 RIRIGRGFSLEELKEAGLNVNSAKTIGISIDYRRRNKSDRSLKTNVQRIKEYRSKLVLFP 367 ++R GRGF+LEELK AG++ AKTIGI++D+RR+NKS S + N+QR+KEYRSKL+LFP Sbjct: 68 KLRTGRGFTLEELKGAGVSAKFAKTIGIAVDFRRKNKSLESRQRNIQRLKEYRSKLILFP 127
Query: 368 KNNKKVKTGEATKEEQSKVSQVRGDVLPAREGGAKLEVVRIADLDSKSSAYTLLRKARAD 547 N KK++ GE++ EE +Q+RG ++P + +E + + K A+ LRKAR D Sbjct: 128 INEKKIRKGESSVEECKLATQLRGPIMPIKAEKPVVEFREVTKDEKKFKAFATLRKARTD 187
Query: 548 ARLVGV 565 ARLVG+ Sbjct: 188 ARLVGI 193
>tr|B5XD30|B5XD30_SALSA 60S ribosomal protein L13 OS=Salmo salar GN=RL13 PE=2 SV=1 Length = 211
Score = 201 bits (511), Expect = 3e-50 Identities = 97/186 (52%), Positives = 134/186 (72%) Frame = +2
Query: 8 IVDVHFHKDWQRRVKTWFNQPARHERRRNARALKAVRVFPRPVAGDLRPLVHAPSHKYNS 187 +++ HFHKDWQ RV+TWFNQPAR RRR AR +KA R+ PRPVAG LRP V P+ +Y++ Sbjct: 9 LLNPHFHKDWQTRVRTWFNQPARKTRRRKARQIKARRIAPRPVAGPLRPQVRCPTIRYHT 68
Query: 188 RIRIGRGFSLEELKEAGLNVNSAKTIGISIDYRRRNKSDRSLKTNVQRIKEYRSKLVLFP 367 ++R GRGF+LEELK AG++ +A+TIGIS+D RRRN+S SL+ NVQR+KEYR KL+LFP Sbjct: 69 KVRAGRGFTLEELKAAGIHKKTARTIGISVDTRRRNRSSESLQANVQRLKEYRPKLILFP 128
Query: 368 KNNKKVKTGEATKEEQSKVSQVRGDVLPAREGGAKLEVVRIADLDSKSSAYTLLRKARAD 547 + K G++T+EE +Q+ G V+P + K + I++ + A+ LR ARA+ Sbjct: 129 RKASAPKKGDSTEEELKMATQLSGAVMPIKNVHKKEKARVISEDEKNFKAFASLRMARAN 188
Query: 548 ARLVGV 565 ARL G+ Sbjct: 189 ARLFGI 194
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