DK960321 |
Clone id |
TST39A01NGRL0007_B16 |
Library |
TST39 |
Length |
627 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_B16. 5' end sequence. |
Accession |
DK960321 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1613Contig1 |
Sequence |
GCTGCTGTGCGCCTTCGTGGAGCTTTAATGGAAGCTTTACCCGCAACCTTTCAGCATCCT CCGTGATATGGGGCCTCCTCCTAACGCCTCAGAGTAGCTCATTTGTGCTGTGTTTTTCCA AGCATACGTTCAAAGGGACACAGGCCATGGCTCCCTCCTTACCTCCTTGCATCGGCAATG CCTTCTGCTCGCATAGGCAAGCATCCTGTGTTCTGCTGGTGACCCTCGTTCCCTTTTTCA TCCCCTTCTTAATTCTCTGTGTGCCATTTTTGCTTCTCTTTCTTGCCCCATTGTCTTCCC TGCTCCTCTCTCTTCTTCTGTTATACAAGGTGCAGGTTTCAATAAGCTCGAGACGACGCT CATCCATTCTCAGCAAAGATGCTTCCGGGAAACTGACTGGATTGACTGAAGCTTCATCTA TAGACAAGGAAGGAAGGAGGTGGCAGGTTTTGCCAGGGTCTGCTGAAGAGCTAGATGGTT CAAATTTGCAGAGTACGGCTGTTTCTTCAGTACGAGATGGGGAAGATTCGCACCAGATGT CATCAAGTGCTAGCAGTCTCATTGGGGAGGAGCCTGACGATGTCAAAGAGCTTGATGCAA GAGATGAATTAGAGCAAAGGCATGCAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
A1WWU7 |
Definition |
sp|A1WWU7|SYS_HALHL Seryl-tRNA synthetase OS=Halorhodospira halophila (strain DSM 244 / SL1) |
Align length |
43 |
Score (bit) |
32.7 |
E-value |
1.6 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960321|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0007_B16, 5' (627 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|A1WWU7|SYS_HALHL Seryl-tRNA synthetase OS=Halorhodospira halo... 33 1.6 sp|P35405|ADA2C_DIDMA Alpha-2C adrenergic receptor OS=Didelphis ... 32 2.0 sp|P0C230|PRT_OSITU Protamine OS=Osilinus turbinatus PE=1 SV=1 32 2.7 sp|A2AI05|NDOR1_MOUSE NADPH-dependent diflavin oxidoreductase 1 ... 32 3.5 sp|Q63755|PRDM2_RAT PR domain zinc finger protein 2 OS=Rattus no... 31 4.5 sp|Q535K8|GON4L_RAT GON-4-like protein OS=Rattus norvegicus GN=G... 31 4.5 sp|Q6P2W5|ARGL1_XENTR Arginine and glutamate-rich protein 1 OS=X... 31 4.5 sp|Q4KLS8|ARGL1_XENLA Arginine and glutamate-rich protein 1 OS=X... 31 4.5 sp|Q6BLU9|PRP28_DEBHA Pre-mRNA-splicing ATP-dependent RNA helica... 31 5.9 sp|Q5KNY5|PPIL4_CRYNE Peptidyl-prolyl cis-trans isomerase-like 4... 31 5.9 sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-r... 30 7.7 sp|P48820|RBP2_BOVIN E3 SUMO-protein ligase RanBP2 (Fragment) OS... 30 7.7 sp|Q04373|PUF6_YEAST Protein PUF6 OS=Saccharomyces cerevisiae GN... 30 7.7
>sp|A1WWU7|SYS_HALHL Seryl-tRNA synthetase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=serS PE=3 SV=1 Length = 425
Score = 32.7 bits (73), Expect = 1.6 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Frame = -3
Query: 391 FPEASLLRMDERRLELI-ETCTLYNRRRERSREDNGARKRSKN 266 F A +D RR +L ET TL N+R ERS+E A+KR ++ Sbjct: 25 FDAAGYRALDARRRDLQQETQTLQNQRNERSKEIGAAKKRGED 67
>sp|P35405|ADA2C_DIDMA Alpha-2C adrenergic receptor OS=Didelphis marsupialis virginiana GN=ADRA2C PE=2 SV=2 Length = 469
Score = 32.3 bits (72), Expect = 2.0 Identities = 16/28 (57%), Positives = 20/28 (71%) Frame = -3
Query: 352 LELIETCTLYNRRRERSREDNGARKRSK 269 +EL E+ T NRRR RSRE+ ARK S+ Sbjct: 304 IELEESSTSENRRRRRSREEAAARKGSR 331
>sp|P0C230|PRT_OSITU Protamine OS=Osilinus turbinatus PE=1 SV=1 Length = 106
Score = 32.0 bits (71), Expect = 2.7 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = -3
Query: 358 RRLELIETCTLYNRRRERSREDNGARKRS-KNGTQRIKKGMKKGTRVTSR 212 RR ++ RRR RSR+ G R+R K +R+K+ +KG R T R Sbjct: 50 RRRSASRRRSVSRRRRRRSRKSRGRRRRGRKVRRRRVKRAGRKGRRRTRR 99
>sp|A2AI05|NDOR1_MOUSE NADPH-dependent diflavin oxidoreductase 1 OS=Mus musculus GN=Ndor1 PE=2 SV=1 Length = 598
Score = 31.6 bits (70), Expect = 3.5 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 5/119 (4%) Frame = -3
Query: 544 DDIWCESSPSRTEETAVLCKFEPSSSSADPGKTCHLLPSLSIDEASVNPVSFPEASLLRM 365 +++W S R VLC F ++ + P L+P + P +F AS L Sbjct: 340 EELWEYCSRPRRTILEVLCDFPHTAGAIPPDYLLDLIP-------RIRPRAFSIASSLLA 392
Query: 364 DERRLELIETCTLYNRRRERSRED-----NGARKRSKNGTQRIKKGMKKGTRVTSRTQD 203 RRL+++ Y R + R + + G R+ ++ G+ V +T D Sbjct: 393 HPRRLQILVAVVKYQTRLKEPRHGLCSSWLASLNPGQAGPVRVPLWVRPGSLVFPKTPD 451
>sp|Q63755|PRDM2_RAT PR domain zinc finger protein 2 OS=Rattus norvegicus GN=Prdm2 PE=2 SV=1 Length = 1706
Score = 31.2 bits (69), Expect = 4.5 Identities = 21/66 (31%), Positives = 31/66 (46%) Frame = -3
Query: 532 CESSPSRTEETAVLCKFEPSSSSADPGKTCHLLPSLSIDEASVNPVSFPEASLLRMDERR 353 CES RT VL K + + S +C L LSI A V VSF + + + + Sbjct: 628 CESKKRRTASPPVLPKIKTETESDSTAPSCSLSLPLSISTAEV--VSFHKEKGVYLSSKL 685
Query: 352 LELIET 335 +L++T Sbjct: 686 KQLLQT 691
>sp|Q535K8|GON4L_RAT GON-4-like protein OS=Rattus norvegicus GN=Gon4l PE=2 SV=1 Length = 2256
Score = 31.2 bits (69), Expect = 4.5 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 15/128 (11%) Frame = -3
Query: 436 LPSLSIDEASVNPVSFP-------------EASLLRMDERRLELIETCTLYNRRRERSRE 296 LPSLS S P + P E SL + + E +E L+ E+ E Sbjct: 178 LPSLSSGSQSAKPRAQPRKSFQPDGSAFPQEKSLGPLVRQAEEDMEDGGLFIPTEEQDGE 237
Query: 295 DNGARKRSKNGTQRIK--KGMKKGTRVTSRTQDACLCEQKALPMQGGKEGAMACVPLNVC 122 ++ RK++K GT+R + +G ++GT D L + L G K+ + V + Sbjct: 238 ESDKRKKTKKGTKRKRDGRGQEQGTMTYDPKVDDML--DRTLE-DGAKQHNLTAVNVRNI 294
Query: 121 LEKHSTNE 98 L + TNE Sbjct: 295 LHEVITNE 302
>sp|Q6P2W5|ARGL1_XENTR Arginine and glutamate-rich protein 1 OS=Xenopus tropicalis GN=arglu1 PE=2 SV=1 Length = 265
Score = 31.2 bits (69), Expect = 4.5 Identities = 17/48 (35%), Positives = 29/48 (60%) Frame = -3
Query: 325 YNRRRERSREDNGARKRSKNGTQRIKKGMKKGTRVTSRTQDACLCEQK 182 +N++R RSRE RKRSK ++ K+ ++ +R SR+ A E++ Sbjct: 20 HNKKRSRSREKERVRKRSK--SRESKRNRRRESRSRSRSNTASRRERE 65
>sp|Q4KLS8|ARGL1_XENLA Arginine and glutamate-rich protein 1 OS=Xenopus laevis GN=arglu1 PE=2 SV=1 Length = 265
Score = 31.2 bits (69), Expect = 4.5 Identities = 17/48 (35%), Positives = 29/48 (60%) Frame = -3
Query: 325 YNRRRERSREDNGARKRSKNGTQRIKKGMKKGTRVTSRTQDACLCEQK 182 +N++R RSRE RKRSK ++ K+ ++ +R SR+ A E++ Sbjct: 20 HNKKRSRSREKERVRKRSK--SRESKRNRRRESRSRSRSNTASRRERE 65
>sp|Q6BLU9|PRP28_DEBHA Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Debaryomyces hansenii GN=PRP28 PE=3 SV=2 Length = 580
Score = 30.8 bits (68), Expect = 5.9 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 6/55 (10%) Frame = -3
Query: 376 LLRMDERRLELIETCTLYNRRRERSREDNGARKRSKNGTQ------RIKKGMKKG 230 L + + ++L L + +++R++S +NGA+KR N + +I K +KKG Sbjct: 27 LSKSERQKLSLQRNQEIQDKKRQQSTVNNGAKKRYNNSIEDNPEPKKINKKLKKG 81
>sp|Q5KNY5|PPIL4_CRYNE Peptidyl-prolyl cis-trans isomerase-like 4 OS=Cryptococcus neoformans GN=CYP6 PE=3 SV=1 Length = 504
Score = 30.8 bits (68), Expect = 5.9 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = -3
Query: 319 RRRERSREDNGARKRSKNGTQRIKKGMKKGTRVTSRTQD 203 R R+R R+D+ R R +NG R + G ++ R SR ++ Sbjct: 452 RDRDRERDDHDRRDRDRNGRDRERNGDRERYRERSRERE 490
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B6K8Z9 |
Definition |
tr|B6K8Z9|B6K8Z9_TOXGO Putative uncharacterized protein OS=Toxoplasma gondii ME49 |
Align length |
141 |
Score (bit) |
42.4 |
E-value |
0.023 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960321|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0007_B16, 5' (627 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B6K8Z9|B6K8Z9_TOXGO Putative uncharacterized protein OS=Toxop... 42 0.023 tr|B6KVP5|B6KVP5_TOXGO Putative uncharacterized protein OS=Toxop... 36 2.1 tr|B8MPR3|B8MPR3_9EURO Putative uncharacterized protein OS=Talar... 36 2.1 tr|B8MPR2|B8MPR2_9EURO Putative uncharacterized protein OS=Talar... 36 2.1 tr|Q176B5|Q176B5_AEDAE Rabconnectin (Fragment) OS=Aedes aegypti ... 35 3.7 tr|Q1EPG5|Q1EPG5_MUSAC Double-stranded RNA-binding (DsRBD) domai... 35 4.8 tr|B4GYJ3|B4GYJ3_DROPE GL19788 OS=Drosophila persimilis GN=GL197... 35 4.8 tr|Q5QUV1|Q5QUV1_IDILO Oxaloacetate decarboxylase, alpha subunit... 34 6.2 tr|Q7PGP9|Q7PGP9_ANOGA AGAP002960-PA OS=Anopheles gambiae GN=AGA... 34 6.2 tr|B4Q0V0|B4Q0V0_DROYA GE16912 OS=Drosophila yakuba GN=GE16912 P... 34 6.2 tr|B6SWA1|B6SWA1_MAIZE Dek protein OS=Zea mays PE=2 SV=1 34 8.1 tr|B5DM84|B5DM84_DROPS GA27143 OS=Drosophila pseudoobscura pseud... 34 8.1
>tr|B6K8Z9|B6K8Z9_TOXGO Putative uncharacterized protein OS=Toxoplasma gondii ME49 GN=TGME49_113110 PE=4 SV=1 Length = 679
Score = 42.4 bits (98), Expect = 0.023 Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 14/141 (9%) Frame = -3
Query: 532 CESSPSRTEETAVLCKFEPSSSSADPGKTCHLLPSLSIDEASVNPVSFPEASLLRMDERR 353 C SS S + ++ C F PSSS A P +C PS S +S+ P AS + ++E + Sbjct: 34 CSSSSSSSSSSSSSCAF-PSSSCASPSSSC-ASPSSSSCSSSLGPSELLSASSVVVEESQ 91
Query: 352 L-ELIETCTLYNRR------RERSREDNGAR-------KRSKNGTQRIKKGMKKGTRVTS 215 E + T R R R +E AR +R + + + M+ G + + Sbjct: 92 SPEGVSARTAEGNRCSAPAARGREQEKAAARGCRRPGRRRGRRPREETEPCMEGGAKKSH 151
Query: 214 RTQDACLCEQKALPMQGGKEG 152 +T +AC+ E + + G EG Sbjct: 152 KTNNACVREGERGAQRSGGEG 172
>tr|B6KVP5|B6KVP5_TOXGO Putative uncharacterized protein OS=Toxoplasma gondii ME49 GN=TGME49_108010 PE=4 SV=1 Length = 1188
Score = 35.8 bits (81), Expect = 2.1 Identities = 31/115 (26%), Positives = 45/115 (39%) Frame = -3
Query: 523 SPSRTEETAVLCKFEPSSSSADPGKTCHLLPSLSIDEASVNPVSFPEASLLRMDERRLEL 344 SPS T L + SSS P PS+S+ A + S P + ++LE Sbjct: 70 SPSLARRTVSLASSQLPSSSPRPSA-----PSISLRPARSSSFSLPPLPGAGLPRQQLEA 124
Query: 343 IETCTLYNRRRERSREDNGARKRSKNGTQRIKKGMKKGTRVTSRTQDACLCEQKA 179 + R +R R+ G R + GT R ++ R R + ACL A Sbjct: 125 AAPHEGHPEREKR-RDSKGTRSENSKGTPRDSGALQHLQREDRRERGACLVSASA 178
>tr|B8MPR3|B8MPR3_9EURO Putative uncharacterized protein OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_052220 PE=4 SV=1 Length = 396
Score = 35.8 bits (81), Expect = 2.1 Identities = 25/94 (26%), Positives = 44/94 (46%) Frame = -3
Query: 484 FEPSSSSADPGKTCHLLPSLSIDEASVNPVSFPEASLLRMDERRLELIETCTLYNRRRER 305 F S++ PG T H +P+ SID ++ +P P++S L + N E Sbjct: 40 FAADSANEHPGATPHTIPNASIDISNFSPSRSPKSSPNTRPNGNLASTSSAANGNSDTES 99
Query: 304 SREDNGARKRSKNGTQRIKKGMKKGTRVTSRTQD 203 + + N RSK+ T ++ G+ +T+ T+D Sbjct: 100 NIQHN---SRSKDSTSSVQS--SNGSSLTNLTED 128
>tr|B8MPR2|B8MPR2_9EURO Putative uncharacterized protein OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_052220 PE=4 SV=1 Length = 396
Score = 35.8 bits (81), Expect = 2.1 Identities = 25/94 (26%), Positives = 44/94 (46%) Frame = -3
Query: 484 FEPSSSSADPGKTCHLLPSLSIDEASVNPVSFPEASLLRMDERRLELIETCTLYNRRRER 305 F S++ PG T H +P+ SID ++ +P P++S L + N E Sbjct: 40 FAADSANEHPGATPHTIPNASIDISNFSPSRSPKSSPNTRPNGNLASTSSAANGNSDTES 99
Query: 304 SREDNGARKRSKNGTQRIKKGMKKGTRVTSRTQD 203 + + N RSK+ T ++ G+ +T+ T+D Sbjct: 100 NIQHN---SRSKDSTSSVQS--SNGSSLTNLTED 128
>tr|Q176B5|Q176B5_AEDAE Rabconnectin (Fragment) OS=Aedes aegypti GN=AAEL006472 PE=4 SV=1 Length = 3324
Score = 35.0 bits (79), Expect = 3.7 Identities = 18/61 (29%), Positives = 28/61 (45%) Frame = +3
Query: 441 WQVLPGSAEELDGSNLQSTAVSSVRDGEDSHQMSSSASSLIGEEPDDVKELDARDELEQR 620 W +L E + + QS + D DS+ + S L+ +EPD + D R L +R Sbjct: 1630 WTLLAADKETVGITAQQSEEIKDYNDLFDSNVVDESLDDLLEDEPDISRHTDRRSSLPER 1689
Query: 621 H 623 H Sbjct: 1690 H 1690
>tr|Q1EPG5|Q1EPG5_MUSAC Double-stranded RNA-binding (DsRBD) domain-containing protein OS=Musa acuminata GN=MA4_106O17.54 PE=4 SV=1 Length = 610
Score = 34.7 bits (78), Expect = 4.8 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 5/52 (9%) Frame = +3
Query: 432 GRRWQVLPGSAE-----ELDGSNLQSTAVSSVRDGEDSHQMSSSASSLIGEE 572 G+ W +LP SAE ++ GS+LQS +S + SH+ SL G E Sbjct: 352 GKEWLILPSSAEAYSALDVSGSSLQSDNISDASTVQKSHEDQEKECSLGGAE 403
>tr|B4GYJ3|B4GYJ3_DROPE GL19788 OS=Drosophila persimilis GN=GL19788 PE=4 SV=1 Length = 226
Score = 34.7 bits (78), Expect = 4.8 Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 20/128 (15%) Frame = -3
Query: 526 SSPSRTEETAVLCKFEP--------SSSSADPGKTCHLLPSLSIDEASVNPVSFPEASLL 371 +S + T T K EP ++S+ T + PS S +S P + ++ Sbjct: 54 TSSTTTTTTTTTPKPEPKTASPSTTTTSTTPSTTTSNTTPSPSTTTSSTTPSTTSTTTIT 113
Query: 370 RM--------DERRLELIETCTLYNRRRER----SREDNGARKRSKNGTQRIKKGMKKGT 227 DE +L++ C +RR++R S ED+G K SK+G ++ +K +KK Sbjct: 114 TTTPKPKDAGDEEAEKLLQQCAELSRRKKRGGSSSEEDSGEGKSSKSG-RKERKQLKKMC 172
Query: 226 RVTSRTQD 203 + R Q+ Sbjct: 173 KELKRQQE 180
>tr|Q5QUV1|Q5QUV1_IDILO Oxaloacetate decarboxylase, alpha subunit OS=Idiomarina loihiensis GN=oadA PE=4 SV=1 Length = 603
Score = 34.3 bits (77), Expect = 6.2 Identities = 20/59 (33%), Positives = 29/59 (49%) Frame = +3
Query: 375 KDASGKLTGLTEASSIDKEGRRWQVLPGSAEELDGSNLQSTAVSSVRDGEDSHQMSSSA 551 + A+ K TG E ++ EG+R+ V G A +LD S+A SS E S S + Sbjct: 473 EQAAPKATGDVEQYEVEVEGKRYNVKVGPAGQLDSVKSSSSAESSQSSPEPSQDSSGGS 531
>tr|Q7PGP9|Q7PGP9_ANOGA AGAP002960-PA OS=Anopheles gambiae GN=AGAP002960 PE=4 SV=3 Length = 447
Score = 34.3 bits (77), Expect = 6.2 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%) Frame = +3
Query: 465 EELDGSNLQSTAVSSVRDGEDSHQMSSSASSL--IGEEPDDVKELDARDELEQ 617 +E+DG L+S +R+G D+ Q S+ L + EE +DV+E + + E E+ Sbjct: 318 DEMDGGALKSKKAHRLREGSDAEQYSAKRRKLDDVEEEEEDVEEAEEQMEDEE 370
>tr|B4Q0V0|B4Q0V0_DROYA GE16912 OS=Drosophila yakuba GN=GE16912 PE=4 SV=1 Length = 205
Score = 34.3 bits (77), Expect = 6.2 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 7/116 (6%) Frame = -3
Query: 529 ESSPSRTEETAVLCKFEPSS-SSADPGKTCHLLPSLSIDEASVNPVSFPEASLLRMDERR 353 ES+ + T T+ PS+ SS P T PS + S + + D+ Sbjct: 70 ESTTASTTTTSTTPSTTPSTTSSTTPSTTPSTTPSTT---PSTTTTTTTTTTPKPDDDEA 126
Query: 352 LELIETCTLYNRRRERS------REDNGARKRSKNGTQRIKKGMKKGTRVTSRTQD 203 +L+E C +RR++R +D+G +K +K +++KK K+ + R Q+ Sbjct: 127 AKLLEQCAELSRRKKRGGSSSSEEDDSGEKKSAKKERKQLKKLCKQLKKQEERKQE 182
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