BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960324|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_B19, 5'
         (640 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UPR3|SMG5_HUMAN Protein SMG5 OS=Homo sapiens GN=SMG5 PE=1 SV=3    31   6.2  
sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus ...    30   8.1  
sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronaviru...    30   8.1  

>sp|Q9UPR3|SMG5_HUMAN Protein SMG5 OS=Homo sapiens GN=SMG5 PE=1 SV=3
          Length = 1016

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
 Frame = +2

Query: 494 CAFQFWDFTDPQYGCKLQAS-----LTWWGVECHQMLVRLGCVS 610
           C   +   TDP  GCK   S     + W  + CH+ LV LG +S
Sbjct: 139 CCIDWTHVTDPLIGCKKPVSASGKEMDWAQMACHRCLVYLGDLS 182


>sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus HKU9
            GN=1a PE=3 SV=1
          Length = 4248

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +2

Query: 389  GSLWLVLFLYALILLCVFAS-IRLYI---FGWVDVTSL*CAFQFWDFTDPQYGCKLQASL 556
            G+ WLV+FLY +I L  F S +R+YI   F W+      C   +  F   +YGC   A L
Sbjct: 2204 GNSWLVVFLYYIIRLVPFTSMLRMYIVIAFLWL------C---YKGFLHVRYGCNNVACL 2254


>sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus
            HKU9 GN=rep PE=3 SV=1
          Length = 6930

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +2

Query: 389  GSLWLVLFLYALILLCVFAS-IRLYI---FGWVDVTSL*CAFQFWDFTDPQYGCKLQASL 556
            G+ WLV+FLY +I L  F S +R+YI   F W+      C   +  F   +YGC   A L
Sbjct: 2204 GNSWLVVFLYYIIRLVPFTSMLRMYIVIAFLWL------C---YKGFLHVRYGCNNVACL 2254

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960324|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_B19, 5'
         (640 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3GH85|A3GH85_PICST Predicted protein OS=Pichia stipitis GN=P...    34   6.6  

>tr|A3GH85|A3GH85_PICST Predicted protein OS=Pichia stipitis
           GN=PICST_81254 PE=4 SV=1
          Length = 1348

 Score = 34.3 bits (77), Expect = 6.6
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
 Frame = -1

Query: 613 PRNTSQTHKHLMAF----------NPPPRKRGLQLTTILRICEVPELKCTLQRGNINPPK 464
           P  + QTH H+  F          N PP K G     IL IC     +  LQ+G  N  K
Sbjct: 76  PETSYQTHIHIAEFSSYPSLPPPSNLPPNKIGTVKNRILAICVKYSGRVLLQKGKYNEAK 135

Query: 463 NV 458
           NV
Sbjct: 136 NV 137