DK960332 |
Clone id |
TST39A01NGRL0007_C03 |
Library |
TST39 |
Length |
609 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_C03. 5' end sequence. |
Accession |
DK960332 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
GAACATGCAGCAAAACAGTTTGGCATTTTCAACTCAGATGATGAAAGTGGCCTTGGCACA GATTCTGTATCTGATGGGATCTCTCTCAAATGTCATTCAGTGGATATGGTTAGTGTATTC AACTATCCCTTTATTCATGATTAACCAAAGGTTCATAGAGGCAGGGGGCTCTTTTTGTGG GGGAACAGTATGTGCATGTGTGTGTGCTTGCGTGCATGCGTGTTTGTGACACTGTATATA TTGTGATTGGTTTGGCGTAAGAACAGAAGGTTGTGGACAGCACGGCAGCAGCTGCAAAGG CTCCGGGAGCTCTCTCTCTTGGTTGTGGAAAGAGAAAAGCTGAAGCTTGAGATTTTCTCA CTTGATCAAGACATTATCAAAGTTGGTATCGAGGCTCTGAATGCGACAGGCAATAGGCAG CTGTGTTCTTCCTGCAAGGAATCGCACCTCTCGCTATTGTGTGCTGTCTGCAACAAAGCT ATTTGCATGTCTTGCCTCATAAAAGAATCCAAATATACTAGCTGGCAAGATTTCCTGAAA CATTCAAACTGTATTTGTCCTGATTGCGAGCAACAGAACATCCAGATGCACATACAACTA ACATGCAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q56R14 |
Definition |
sp|Q56R14|TRI33_XENLA E3 ubiquitin-protein ligase TRIM33 OS=Xenopus laevis |
Align length |
50 |
Score (bit) |
33.5 |
E-value |
0.88 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960332|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0007_C03, 5' (609 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q56R14|TRI33_XENLA E3 ubiquitin-protein ligase TRIM33 OS=Xeno... 33 0.88 sp|Q9UPN9|TRI33_HUMAN E3 ubiquitin-protein ligase TRIM33 OS=Homo... 33 1.5 sp|Q64127|TIF1A_MOUSE Transcription intermediary factor 1-alpha ... 33 1.5 sp|O15164|TIF1A_HUMAN Transcription intermediary factor 1-alpha ... 33 1.5 sp|P11835|ITB2_MOUSE Integrin beta-2 OS=Mus musculus GN=Itgb2 PE... 32 2.0 sp|Q6PDQ2|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4... 32 2.0 sp|Q14839|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4... 32 2.0 sp|Q924W6|TRI66_MOUSE Tripartite motif-containing protein 66 OS=... 32 2.6 sp|O15016|TRI66_HUMAN Tripartite motif-containing protein 66 OS=... 32 2.6 sp|Q14192|FHL2_HUMAN Four and a half LIM domains protein 2 OS=Ho... 32 2.6 sp|Q2KI95|FHL2_BOVIN Four and a half LIM domains protein 2 OS=Bo... 32 2.6 sp|Q12873|CHD3_HUMAN Chromodomain-helicase-DNA-binding protein 3... 32 2.6 sp|Q8TDI0|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5... 32 3.3 sp|P46639|KNAT1_ARATH Homeobox protein knotted-1-like 1 OS=Arabi... 31 4.3 sp|Q6LFN2|ZNRF1_PLAF7 RING finger protein PFF0165c OS=Plasmodium... 31 4.4 sp|Q6PFY8|TRI45_MOUSE Tripartite motif-containing protein 45 OS=... 31 4.4 sp|Q99PP7|TRI33_MOUSE E3 ubiquitin-protein ligase TRIM33 OS=Mus ... 31 4.4 sp|P05107|ITB2_HUMAN Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE... 31 4.4 sp|Q13642|FHL1_HUMAN Four and a half LIM domains protein 1 OS=Ho... 31 4.4 sp|Q6ZPK0|PF21A_MOUSE PHD finger protein 21A OS=Mus musculus GN=... 31 5.7 sp|Q96BD5|PF21A_HUMAN PHD finger protein 21A OS=Homo sapiens GN=... 31 5.7 sp|Q5SNZ0|GRDN_MOUSE Girdin OS=Mus musculus GN=Ccdc88a PE=1 SV=2 31 5.7 sp|Q3V6T2|GRDN_HUMAN Girdin OS=Homo sapiens GN=CCDC88A PE=1 SV=2 31 5.7 sp|Q2YDK0|FHL5_BOVIN Four and a half LIM domains protein 5 OS=Bo... 31 5.7 sp|Q7ZVS8|FTSJ1_DANRE FtsJ methyltransferase domain-containing p... 30 7.5 sp|O35115|FHL2_RAT Four and a half LIM domains protein 2 OS=Ratt... 30 7.5 sp|O70433|FHL2_MOUSE Four and a half LIM domains protein 2 OS=Mu... 30 7.5 sp|P53413|LMX1B_CHICK LIM/homeobox protein LMX-1.2 OS=Gallus gal... 30 9.7 sp|Q6CSS6|CWC24_KLULA Pre-mRNA-splicing factor CWC24 OS=Kluyvero... 30 9.7 sp|P22682|CBL_MOUSE E3 ubiquitin-protein ligase CBL OS=Mus muscu... 30 9.7
>sp|Q56R14|TRI33_XENLA E3 ubiquitin-protein ligase TRIM33 OS=Xenopus laevis GN=trim33 PE=1 SV=1 Length = 1091
Score = 33.5 bits (75), Expect = 0.88 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Frame = +1
Query: 382 VGIEALNATGNRQL-CSSCKESHLSLLCAVCNKAICMSCLIKESKYTSWQ 528 V E++ A+G R + C K+ L L C C++ C C + E K +Q Sbjct: 230 VSSESVGASGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHRYQ 279
>sp|Q9UPN9|TRI33_HUMAN E3 ubiquitin-protein ligase TRIM33 OS=Homo sapiens GN=TRIM33 PE=1 SV=2 Length = 1127
Score = 32.7 bits (73), Expect = 1.5 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Frame = +1
Query: 391 EALNATGNRQL-CSSCKESHLSLLCAVCNKAICMSCLIKESKYTSWQ 528 E++ A+G R + C K+ L L C C++ C C + E K +Q Sbjct: 264 ESVGASGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHRYQ 310
>sp|Q64127|TIF1A_MOUSE Transcription intermediary factor 1-alpha OS=Mus musculus GN=Trim24 PE=1 SV=1 Length = 1051
Score = 32.7 bits (73), Expect = 1.5 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Frame = +1
Query: 379 KVGIEALNATGNRQL-CSSCKESHLSLLCAVCNKAICMSCLIKESKYTSWQ 528 +V EA+ T R + C K+ L L C C+K C C + E K +Q Sbjct: 207 EVSPEAVGVTSQRPVFCPFHKKEQLKLYCETCDKLTCRDCQLLEHKEHRYQ 257
>sp|O15164|TIF1A_HUMAN Transcription intermediary factor 1-alpha OS=Homo sapiens GN=TRIM24 PE=1 SV=3 Length = 1050
Score = 32.7 bits (73), Expect = 1.5 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Frame = +1
Query: 379 KVGIEALNATGNRQL-CSSCKESHLSLLCAVCNKAICMSCLIKESKYTSWQ 528 +V EA+ T R + C K+ L L C C+K C C + E K +Q Sbjct: 207 EVSPEAVGVTSQRPVFCPFHKKEQLKLYCETCDKLTCRDCQLLEHKEHRYQ 257
>sp|P11835|ITB2_MOUSE Integrin beta-2 OS=Mus musculus GN=Itgb2 PE=2 SV=2 Length = 771
Score = 32.3 bits (72), Expect = 2.0 Identities = 14/59 (23%), Positives = 32/59 (54%) Frame = +1
Query: 412 NRQLCSSCKESHLSLLCAVCNKAICMSCLIKESKYTSWQDFLKHSNCICPDCEQQNIQM 588 +++L +C++ + S++C+ IC C+ S + + F ++ C +CE+ N Q+ Sbjct: 491 SQELERNCRKDNSSIVCSGLGDCICGQCVCHTSDVPNKEIFGQYCECDNVNCERYNSQV 549
>sp|Q6PDQ2|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1 Length = 1915
Score = 32.3 bits (72), Expect = 2.0 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%) Frame = +1
Query: 406 TGNRQLCSSCKESHLSLLCAVCNKAICMSCL---IKESKYTSWQDFLKHSNCICPDCEQQ 576 T ++ C C++ +LC C +A M CL ++++ W CP CE++ Sbjct: 360 TDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWS---------CPHCEKE 410
Query: 577 NIQ 585 IQ Sbjct: 411 GIQ 413
>sp|Q14839|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=1 Length = 1912
Score = 32.3 bits (72), Expect = 2.0 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%) Frame = +1
Query: 406 TGNRQLCSSCKESHLSLLCAVCNKAICMSCL---IKESKYTSWQDFLKHSNCICPDCEQQ 576 T ++ C C++ +LC C +A M CL ++++ W CP CE++ Sbjct: 367 TDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWS---------CPHCEKE 417
Query: 577 NIQ 585 IQ Sbjct: 418 GIQ 420
>sp|Q924W6|TRI66_MOUSE Tripartite motif-containing protein 66 OS=Mus musculus GN=Trim66 PE=1 SV=2 Length = 1242
Score = 32.0 bits (71), Expect = 2.6 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%) Frame = +1
Query: 424 CSSCKESHLS-LLCAVCNKAICMSC 495 CS CKE + +LC CN+ +C SC Sbjct: 5 CSECKEKRAAHILCTYCNRWLCSSC 29
>sp|O15016|TRI66_HUMAN Tripartite motif-containing protein 66 OS=Homo sapiens GN=TRIM66 PE=2 SV=3 Length = 1214
Score = 32.0 bits (71), Expect = 2.6 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%) Frame = +1
Query: 424 CSSCKESHLS-LLCAVCNKAICMSC 495 CS CKE + +LC CN+ +C SC Sbjct: 5 CSECKEKRAAHILCTYCNRWLCSSC 29
>sp|Q14192|FHL2_HUMAN Four and a half LIM domains protein 2 OS=Homo sapiens GN=FHL2 PE=1 SV=3 Length = 279
Score = 32.0 bits (71), Expect = 2.6 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Frame = +1
Query: 403 ATGNRQLCSSCKESHLSLLCAVCNKAICMSCLIKESKYTSWQDFLKHSNC-ICPDCEQ 573 A ++ LC+ C + S C C K I E K +SW H C IC C+Q Sbjct: 82 AKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGSSW-----HETCFICHRCQQ 134
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B0EAQ7 |
Definition |
tr|B0EAQ7|B0EAQ7_ENTDI Protein serine/threonine kinase, putative OS=Entamoeba dispar SAW760 |
Align length |
72 |
Score (bit) |
36.2 |
E-value |
1.5 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960332|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0007_C03, 5' (609 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B0EAQ7|B0EAQ7_ENTDI Protein serine/threonine kinase, putative... 36 1.5 tr|Q5CV66|Q5CV66_CRYPV Protein with 2x PHD domains OS=Cryptospor... 36 2.0 tr|Q4RIQ2|Q4RIQ2_TETNG Chromosome 7 SCAF15042, whole genome shot... 35 3.4 tr|O65596|O65596_ARATH Putative uncharacterized protein M3E9.190... 35 3.4 tr|B0EP22|B0EP22_ENTDI Rho/RAC guanine nucleotide exchange facto... 35 3.4 tr|Q2VPL5|Q2VPL5_XENLA MGC131247 protein OS=Xenopus laevis GN=MG... 34 5.8 tr|Q28FL8|Q28FL8_XENTR Tripartite motif-containing 33 (Fragment)... 34 5.8 tr|Q0P4M9|Q0P4M9_XENTR Tripartite motif-containing 33 OS=Xenopus... 34 5.8 tr|Q235Z7|Q235Z7_TETTH Putative uncharacterized protein OS=Tetra... 34 5.8 tr|B7PFS9|B7PFS9_IXOSC Transcription intermediary factor 1-alpha... 34 5.8 tr|Q23D60|Q23D60_TETTH SNF2 family N-terminal domain containing ... 34 7.6 tr|A8BMX2|A8BMX2_GIALA GTP-binding protein ARD-1, putative OS=Gi... 34 7.6 tr|Q66KN8|Q66KN8_XENLA MGC85575 protein OS=Xenopus laevis GN=fhl... 33 10.0 tr|B8A5M1|B8A5M1_DANRE Novel protein similar to vertebrate tripa... 33 10.0 tr|B7ZRX2|B7ZRX2_XENLA Ectodermin OS=Xenopus laevis GN=LOC733198... 33 10.0 tr|B7ZRU5|B7ZRU5_XENLA Ectodermin OS=Xenopus laevis GN=LOC733198... 33 10.0 tr|B6P9C0|B6P9C0_BRAFL Putative uncharacterized protein OS=Branc... 33 10.0 tr|B6MF98|B6MF98_BRAFL Putative uncharacterized protein (Fragmen... 33 10.0 tr|B6AA85|B6AA85_9CRYT SNF2 family N-terminal domain-containing ... 33 10.0 tr|B4PUT9|B4PUT9_DROYA GE24161 OS=Drosophila yakuba GN=GE24161 P... 33 10.0 tr|B3P2F8|B3P2F8_DROER GG10942 OS=Drosophila erecta GN=GG10942 P... 33 10.0 tr|A7S6L0|A7S6L0_NEMVE Predicted protein OS=Nematostella vectens... 33 10.0
>tr|B0EAQ7|B0EAQ7_ENTDI Protein serine/threonine kinase, putative OS=Entamoeba dispar SAW760 GN=EDI_017280 PE=4 SV=1 Length = 2024
Score = 36.2 bits (82), Expect = 1.5 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 6/72 (8%) Frame = +1
Query: 412 NRQLCSSCKESHLS-----LLCAVCNKAICMSCLIKESKYTSWQDFLKHSNCI-CPDCEQ 573 N+ LC+SCKE L+ + + C SC+ + KY +L+ +NCI CPD Q Sbjct: 1175 NKMLCTSCKEGILTSEGKCVTASNCETFTNSSCVKCKPKY-----YLEDNNCINCPDGCQ 1229
Query: 574 QNIQMHIQLTCK 609 + I+++ + C+ Sbjct: 1230 ECIKVNSGVKCR 1241
>tr|Q5CV66|Q5CV66_CRYPV Protein with 2x PHD domains OS=Cryptosporidium parvum Iowa II GN=cgd8_5250 PE=4 SV=1 Length = 336
Score = 35.8 bits (81), Expect = 2.0 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Frame = +1
Query: 385 GIEALNATGNRQLCSSCKESHLSLLCAVCNKAICMSCLIKESKYTSWQDFLKHSNC---- 552 G + L++ ++C CKE L+C VCN A+ S ++ S H+NC Sbjct: 274 GFDYLDSKYGTRICYECKEDEKDLICGVCNCALYKS----GNRVCSLCKMYVHNNCLNAQ 329
Query: 553 ICPDCEQ 573 IC C Q Sbjct: 330 ICNLCNQ 336
>tr|Q4RIQ2|Q4RIQ2_TETNG Chromosome 7 SCAF15042, whole genome shotgun sequence OS=Tetraodon nigroviridis GN=GSTENG00033796001 PE=4 SV=1 Length = 953
Score = 35.0 bits (79), Expect = 3.4 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Frame = +1
Query: 382 VGIEALNATGNRQLCSSCKESHLSLLCAVCNKAICMSCLIKESKYTSWQDFLKHSNC-IC 558 +G ++ + G+ CS C + + C CNKAI S S+QD HS+C +C Sbjct: 136 IGTQSFLSKGSDVYCSPCYDKKFAKHCVGCNKAI-------TSGGVSYQDQPWHSHCFVC 188
Query: 559 PDCEQ 573 C + Sbjct: 189 SSCSK 193
>tr|O65596|O65596_ARATH Putative uncharacterized protein M3E9.190 (Putative uncharacterized protein AT4g26380) OS=Arabidopsis thaliana GN=M3E9.190 PE=2 SV=2 Length = 1016
Score = 35.0 bits (79), Expect = 3.4 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 5/34 (14%) Frame = +1
Query: 409 GNRQLCSSCKESHLSLL-----CAVCNKAICMSC 495 G R+LCS+CKES+ S+ C C+ A+C C Sbjct: 872 GERRLCSACKESYFSVTRETFNCIECDFALCFRC 905
>tr|B0EP22|B0EP22_ENTDI Rho/RAC guanine nucleotide exchange factor, putative OS=Entamoeba dispar SAW760 GN=EDI_242090 PE=4 SV=1 Length = 636
Score = 35.0 bits (79), Expect = 3.4 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = +1
Query: 391 EALNATGNRQLCSSCKESHLSLLCAVCNKAICMSCLIKESKYT 519 E + T ++ C C ++++S C VCNK +C C +S Y+ Sbjct: 314 EEIYQTLGKKCCVFCHKANISTKCPVCNKTVCDECKNDKSCYS 356
>tr|Q2VPL5|Q2VPL5_XENLA MGC131247 protein OS=Xenopus laevis GN=MGC131247 PE=2 SV=1 Length = 543
Score = 34.3 bits (77), Expect = 5.8 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = +1
Query: 355 FSLDQDIIK---VGIEALNATGNRQL-CSSCKESHLSLLCAVCNKAICMSCLIKESKYTS 522 F+ D I K V E++ A+G R + C K+ L L C C++ C C + E K Sbjct: 226 FTKDHVITKKEDVSSESVGASGQRPVFCPIHKQEQLKLFCETCDRLTCRDCQLLEHKEHR 285
Query: 523 WQ 528 +Q Sbjct: 286 YQ 287
>tr|Q28FL8|Q28FL8_XENTR Tripartite motif-containing 33 (Fragment) OS=Xenopus tropicalis GN=trim33 PE=2 SV=1 Length = 320
Score = 34.3 bits (77), Expect = 5.8 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = +1
Query: 355 FSLDQDIIK---VGIEALNATGNRQL-CSSCKESHLSLLCAVCNKAICMSCLIKESKYTS 522 F+ D I K V E++ A+G R + C K+ L L C C++ C C + E K Sbjct: 222 FTKDHIITKKEDVSSESVGASGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHR 281
Query: 523 WQ 528 +Q Sbjct: 282 YQ 283
>tr|Q0P4M9|Q0P4M9_XENTR Tripartite motif-containing 33 OS=Xenopus tropicalis GN=trim33 PE=2 SV=1 Length = 711
Score = 34.3 bits (77), Expect = 5.8 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = +1
Query: 355 FSLDQDIIK---VGIEALNATGNRQL-CSSCKESHLSLLCAVCNKAICMSCLIKESKYTS 522 F+ D I K V E++ A+G R + C K+ L L C C++ C C + E K Sbjct: 222 FTKDHIITKKEDVSSESVGASGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHR 281
Query: 523 WQ 528 +Q Sbjct: 282 YQ 283
>tr|Q235Z7|Q235Z7_TETTH Putative uncharacterized protein OS=Tetrahymena thermophila SB210 GN=TTHERM_00093940 PE=4 SV=1 Length = 1404
Score = 34.3 bits (77), Expect = 5.8 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = +1
Query: 457 LCAVCNKAICMSCLIKESKYTSWQD-FLKHSNCICPDCEQQNIQMHIQLTC 606 +C C+K C +C+ +SK TS D + H N DC + I+ + C Sbjct: 1185 MCLQCDKQKCQTCIDNKSKCTSCHDGYFLHKNQCLSDCPKGTIKNLVTQNC 1235
>tr|B7PFS9|B7PFS9_IXOSC Transcription intermediary factor 1-alpha, putative (Fragment) OS=Ixodes scapularis GN=IscW_ISCW017611 PE=4 SV=1 Length = 907
Score = 34.3 bits (77), Expect = 5.8 Identities = 17/56 (30%), Positives = 25/56 (44%) Frame = +1
Query: 424 CSSCKESHLSLLCAVCNKAICMSCLIKESKYTSWQDFLKHSNCICPDCEQQNIQMH 591 C + K+ L L C C+K C C ++E K +Q I CEQQ ++ Sbjct: 103 CENHKQEQLKLYCETCDKLTCRDCQLQEHKDHKYQ-------FISSACEQQKTSLN 151
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