DK960332
Clone id TST39A01NGRL0007_C03
Library
Length 609
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_C03. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
GAACATGCAGCAAAACAGTTTGGCATTTTCAACTCAGATGATGAAAGTGGCCTTGGCACA
GATTCTGTATCTGATGGGATCTCTCTCAAATGTCATTCAGTGGATATGGTTAGTGTATTC
AACTATCCCTTTATTCATGATTAACCAAAGGTTCATAGAGGCAGGGGGCTCTTTTTGTGG
GGGAACAGTATGTGCATGTGTGTGTGCTTGCGTGCATGCGTGTTTGTGACACTGTATATA
TTGTGATTGGTTTGGCGTAAGAACAGAAGGTTGTGGACAGCACGGCAGCAGCTGCAAAGG
CTCCGGGAGCTCTCTCTCTTGGTTGTGGAAAGAGAAAAGCTGAAGCTTGAGATTTTCTCA
CTTGATCAAGACATTATCAAAGTTGGTATCGAGGCTCTGAATGCGACAGGCAATAGGCAG
CTGTGTTCTTCCTGCAAGGAATCGCACCTCTCGCTATTGTGTGCTGTCTGCAACAAAGCT
ATTTGCATGTCTTGCCTCATAAAAGAATCCAAATATACTAGCTGGCAAGATTTCCTGAAA
CATTCAAACTGTATTTGTCCTGATTGCGAGCAACAGAACATCCAGATGCACATACAACTA
ACATGCAAA
■■Homology search results ■■ -
sp_hit_id Q56R14
Definition sp|Q56R14|TRI33_XENLA E3 ubiquitin-protein ligase TRIM33 OS=Xenopus laevis
Align length 50
Score (bit) 33.5
E-value 0.88
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960332|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_C03, 5'
(609 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q56R14|TRI33_XENLA E3 ubiquitin-protein ligase TRIM33 OS=Xeno... 33 0.88
sp|Q9UPN9|TRI33_HUMAN E3 ubiquitin-protein ligase TRIM33 OS=Homo... 33 1.5
sp|Q64127|TIF1A_MOUSE Transcription intermediary factor 1-alpha ... 33 1.5
sp|O15164|TIF1A_HUMAN Transcription intermediary factor 1-alpha ... 33 1.5
sp|P11835|ITB2_MOUSE Integrin beta-2 OS=Mus musculus GN=Itgb2 PE... 32 2.0
sp|Q6PDQ2|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4... 32 2.0
sp|Q14839|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4... 32 2.0
sp|Q924W6|TRI66_MOUSE Tripartite motif-containing protein 66 OS=... 32 2.6
sp|O15016|TRI66_HUMAN Tripartite motif-containing protein 66 OS=... 32 2.6
sp|Q14192|FHL2_HUMAN Four and a half LIM domains protein 2 OS=Ho... 32 2.6
sp|Q2KI95|FHL2_BOVIN Four and a half LIM domains protein 2 OS=Bo... 32 2.6
sp|Q12873|CHD3_HUMAN Chromodomain-helicase-DNA-binding protein 3... 32 2.6
sp|Q8TDI0|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5... 32 3.3
sp|P46639|KNAT1_ARATH Homeobox protein knotted-1-like 1 OS=Arabi... 31 4.3
sp|Q6LFN2|ZNRF1_PLAF7 RING finger protein PFF0165c OS=Plasmodium... 31 4.4
sp|Q6PFY8|TRI45_MOUSE Tripartite motif-containing protein 45 OS=... 31 4.4
sp|Q99PP7|TRI33_MOUSE E3 ubiquitin-protein ligase TRIM33 OS=Mus ... 31 4.4
sp|P05107|ITB2_HUMAN Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE... 31 4.4
sp|Q13642|FHL1_HUMAN Four and a half LIM domains protein 1 OS=Ho... 31 4.4
sp|Q6ZPK0|PF21A_MOUSE PHD finger protein 21A OS=Mus musculus GN=... 31 5.7
sp|Q96BD5|PF21A_HUMAN PHD finger protein 21A OS=Homo sapiens GN=... 31 5.7
sp|Q5SNZ0|GRDN_MOUSE Girdin OS=Mus musculus GN=Ccdc88a PE=1 SV=2 31 5.7
sp|Q3V6T2|GRDN_HUMAN Girdin OS=Homo sapiens GN=CCDC88A PE=1 SV=2 31 5.7
sp|Q2YDK0|FHL5_BOVIN Four and a half LIM domains protein 5 OS=Bo... 31 5.7
sp|Q7ZVS8|FTSJ1_DANRE FtsJ methyltransferase domain-containing p... 30 7.5
sp|O35115|FHL2_RAT Four and a half LIM domains protein 2 OS=Ratt... 30 7.5
sp|O70433|FHL2_MOUSE Four and a half LIM domains protein 2 OS=Mu... 30 7.5
sp|P53413|LMX1B_CHICK LIM/homeobox protein LMX-1.2 OS=Gallus gal... 30 9.7
sp|Q6CSS6|CWC24_KLULA Pre-mRNA-splicing factor CWC24 OS=Kluyvero... 30 9.7
sp|P22682|CBL_MOUSE E3 ubiquitin-protein ligase CBL OS=Mus muscu... 30 9.7

>sp|Q56R14|TRI33_XENLA E3 ubiquitin-protein ligase TRIM33 OS=Xenopus
laevis GN=trim33 PE=1 SV=1
Length = 1091

Score = 33.5 bits (75), Expect = 0.88
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1

Query: 382 VGIEALNATGNRQL-CSSCKESHLSLLCAVCNKAICMSCLIKESKYTSWQ 528
V E++ A+G R + C K+ L L C C++ C C + E K +Q
Sbjct: 230 VSSESVGASGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHRYQ 279


>sp|Q9UPN9|TRI33_HUMAN E3 ubiquitin-protein ligase TRIM33 OS=Homo
sapiens GN=TRIM33 PE=1 SV=2
Length = 1127

Score = 32.7 bits (73), Expect = 1.5
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1

Query: 391 EALNATGNRQL-CSSCKESHLSLLCAVCNKAICMSCLIKESKYTSWQ 528
E++ A+G R + C K+ L L C C++ C C + E K +Q
Sbjct: 264 ESVGASGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHRYQ 310


>sp|Q64127|TIF1A_MOUSE Transcription intermediary factor 1-alpha
OS=Mus musculus GN=Trim24 PE=1 SV=1
Length = 1051

Score = 32.7 bits (73), Expect = 1.5
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1

Query: 379 KVGIEALNATGNRQL-CSSCKESHLSLLCAVCNKAICMSCLIKESKYTSWQ 528
+V EA+ T R + C K+ L L C C+K C C + E K +Q
Sbjct: 207 EVSPEAVGVTSQRPVFCPFHKKEQLKLYCETCDKLTCRDCQLLEHKEHRYQ 257


>sp|O15164|TIF1A_HUMAN Transcription intermediary factor 1-alpha
OS=Homo sapiens GN=TRIM24 PE=1 SV=3
Length = 1050

Score = 32.7 bits (73), Expect = 1.5
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1

Query: 379 KVGIEALNATGNRQL-CSSCKESHLSLLCAVCNKAICMSCLIKESKYTSWQ 528
+V EA+ T R + C K+ L L C C+K C C + E K +Q
Sbjct: 207 EVSPEAVGVTSQRPVFCPFHKKEQLKLYCETCDKLTCRDCQLLEHKEHRYQ 257


>sp|P11835|ITB2_MOUSE Integrin beta-2 OS=Mus musculus GN=Itgb2 PE=2
SV=2
Length = 771

Score = 32.3 bits (72), Expect = 2.0
Identities = 14/59 (23%), Positives = 32/59 (54%)
Frame = +1

Query: 412 NRQLCSSCKESHLSLLCAVCNKAICMSCLIKESKYTSWQDFLKHSNCICPDCEQQNIQM 588
+++L +C++ + S++C+ IC C+ S + + F ++ C +CE+ N Q+
Sbjct: 491 SQELERNCRKDNSSIVCSGLGDCICGQCVCHTSDVPNKEIFGQYCECDNVNCERYNSQV 549


>sp|Q6PDQ2|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4
OS=Mus musculus GN=Chd4 PE=1 SV=1
Length = 1915

Score = 32.3 bits (72), Expect = 2.0
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +1

Query: 406 TGNRQLCSSCKESHLSLLCAVCNKAICMSCL---IKESKYTSWQDFLKHSNCICPDCEQQ 576
T ++ C C++ +LC C +A M CL ++++ W CP CE++
Sbjct: 360 TDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWS---------CPHCEKE 410

Query: 577 NIQ 585
IQ
Sbjct: 411 GIQ 413


>sp|Q14839|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4
OS=Homo sapiens GN=CHD4 PE=1 SV=1
Length = 1912

Score = 32.3 bits (72), Expect = 2.0
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +1

Query: 406 TGNRQLCSSCKESHLSLLCAVCNKAICMSCL---IKESKYTSWQDFLKHSNCICPDCEQQ 576
T ++ C C++ +LC C +A M CL ++++ W CP CE++
Sbjct: 367 TDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWS---------CPHCEKE 417

Query: 577 NIQ 585
IQ
Sbjct: 418 GIQ 420


>sp|Q924W6|TRI66_MOUSE Tripartite motif-containing protein 66 OS=Mus
musculus GN=Trim66 PE=1 SV=2
Length = 1242

Score = 32.0 bits (71), Expect = 2.6
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +1

Query: 424 CSSCKESHLS-LLCAVCNKAICMSC 495
CS CKE + +LC CN+ +C SC
Sbjct: 5 CSECKEKRAAHILCTYCNRWLCSSC 29


>sp|O15016|TRI66_HUMAN Tripartite motif-containing protein 66
OS=Homo sapiens GN=TRIM66 PE=2 SV=3
Length = 1214

Score = 32.0 bits (71), Expect = 2.6
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +1

Query: 424 CSSCKESHLS-LLCAVCNKAICMSC 495
CS CKE + +LC CN+ +C SC
Sbjct: 5 CSECKEKRAAHILCTYCNRWLCSSC 29


>sp|Q14192|FHL2_HUMAN Four and a half LIM domains protein 2 OS=Homo
sapiens GN=FHL2 PE=1 SV=3
Length = 279

Score = 32.0 bits (71), Expect = 2.6
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +1

Query: 403 ATGNRQLCSSCKESHLSLLCAVCNKAICMSCLIKESKYTSWQDFLKHSNC-ICPDCEQ 573
A ++ LC+ C + S C C K I E K +SW H C IC C+Q
Sbjct: 82 AKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGSSW-----HETCFICHRCQQ 134


tr_hit_id B0EAQ7
Definition tr|B0EAQ7|B0EAQ7_ENTDI Protein serine/threonine kinase, putative OS=Entamoeba dispar SAW760
Align length 72
Score (bit) 36.2
E-value 1.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960332|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_C03, 5'
(609 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B0EAQ7|B0EAQ7_ENTDI Protein serine/threonine kinase, putative... 36 1.5
tr|Q5CV66|Q5CV66_CRYPV Protein with 2x PHD domains OS=Cryptospor... 36 2.0
tr|Q4RIQ2|Q4RIQ2_TETNG Chromosome 7 SCAF15042, whole genome shot... 35 3.4
tr|O65596|O65596_ARATH Putative uncharacterized protein M3E9.190... 35 3.4
tr|B0EP22|B0EP22_ENTDI Rho/RAC guanine nucleotide exchange facto... 35 3.4
tr|Q2VPL5|Q2VPL5_XENLA MGC131247 protein OS=Xenopus laevis GN=MG... 34 5.8
tr|Q28FL8|Q28FL8_XENTR Tripartite motif-containing 33 (Fragment)... 34 5.8
tr|Q0P4M9|Q0P4M9_XENTR Tripartite motif-containing 33 OS=Xenopus... 34 5.8
tr|Q235Z7|Q235Z7_TETTH Putative uncharacterized protein OS=Tetra... 34 5.8
tr|B7PFS9|B7PFS9_IXOSC Transcription intermediary factor 1-alpha... 34 5.8
tr|Q23D60|Q23D60_TETTH SNF2 family N-terminal domain containing ... 34 7.6
tr|A8BMX2|A8BMX2_GIALA GTP-binding protein ARD-1, putative OS=Gi... 34 7.6
tr|Q66KN8|Q66KN8_XENLA MGC85575 protein OS=Xenopus laevis GN=fhl... 33 10.0
tr|B8A5M1|B8A5M1_DANRE Novel protein similar to vertebrate tripa... 33 10.0
tr|B7ZRX2|B7ZRX2_XENLA Ectodermin OS=Xenopus laevis GN=LOC733198... 33 10.0
tr|B7ZRU5|B7ZRU5_XENLA Ectodermin OS=Xenopus laevis GN=LOC733198... 33 10.0
tr|B6P9C0|B6P9C0_BRAFL Putative uncharacterized protein OS=Branc... 33 10.0
tr|B6MF98|B6MF98_BRAFL Putative uncharacterized protein (Fragmen... 33 10.0
tr|B6AA85|B6AA85_9CRYT SNF2 family N-terminal domain-containing ... 33 10.0
tr|B4PUT9|B4PUT9_DROYA GE24161 OS=Drosophila yakuba GN=GE24161 P... 33 10.0
tr|B3P2F8|B3P2F8_DROER GG10942 OS=Drosophila erecta GN=GG10942 P... 33 10.0
tr|A7S6L0|A7S6L0_NEMVE Predicted protein OS=Nematostella vectens... 33 10.0

>tr|B0EAQ7|B0EAQ7_ENTDI Protein serine/threonine kinase, putative
OS=Entamoeba dispar SAW760 GN=EDI_017280 PE=4 SV=1
Length = 2024

Score = 36.2 bits (82), Expect = 1.5
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Frame = +1

Query: 412 NRQLCSSCKESHLS-----LLCAVCNKAICMSCLIKESKYTSWQDFLKHSNCI-CPDCEQ 573
N+ LC+SCKE L+ + + C SC+ + KY +L+ +NCI CPD Q
Sbjct: 1175 NKMLCTSCKEGILTSEGKCVTASNCETFTNSSCVKCKPKY-----YLEDNNCINCPDGCQ 1229

Query: 574 QNIQMHIQLTCK 609
+ I+++ + C+
Sbjct: 1230 ECIKVNSGVKCR 1241


>tr|Q5CV66|Q5CV66_CRYPV Protein with 2x PHD domains
OS=Cryptosporidium parvum Iowa II GN=cgd8_5250 PE=4 SV=1
Length = 336

Score = 35.8 bits (81), Expect = 2.0
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +1

Query: 385 GIEALNATGNRQLCSSCKESHLSLLCAVCNKAICMSCLIKESKYTSWQDFLKHSNC---- 552
G + L++ ++C CKE L+C VCN A+ S ++ S H+NC
Sbjct: 274 GFDYLDSKYGTRICYECKEDEKDLICGVCNCALYKS----GNRVCSLCKMYVHNNCLNAQ 329

Query: 553 ICPDCEQ 573
IC C Q
Sbjct: 330 ICNLCNQ 336


>tr|Q4RIQ2|Q4RIQ2_TETNG Chromosome 7 SCAF15042, whole genome shotgun
sequence OS=Tetraodon nigroviridis GN=GSTENG00033796001
PE=4 SV=1
Length = 953

Score = 35.0 bits (79), Expect = 3.4
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1

Query: 382 VGIEALNATGNRQLCSSCKESHLSLLCAVCNKAICMSCLIKESKYTSWQDFLKHSNC-IC 558
+G ++ + G+ CS C + + C CNKAI S S+QD HS+C +C
Sbjct: 136 IGTQSFLSKGSDVYCSPCYDKKFAKHCVGCNKAI-------TSGGVSYQDQPWHSHCFVC 188

Query: 559 PDCEQ 573
C +
Sbjct: 189 SSCSK 193


>tr|O65596|O65596_ARATH Putative uncharacterized protein M3E9.190
(Putative uncharacterized protein AT4g26380)
OS=Arabidopsis thaliana GN=M3E9.190 PE=2 SV=2
Length = 1016

Score = 35.0 bits (79), Expect = 3.4
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Frame = +1

Query: 409 GNRQLCSSCKESHLSLL-----CAVCNKAICMSC 495
G R+LCS+CKES+ S+ C C+ A+C C
Sbjct: 872 GERRLCSACKESYFSVTRETFNCIECDFALCFRC 905


>tr|B0EP22|B0EP22_ENTDI Rho/RAC guanine nucleotide exchange factor,
putative OS=Entamoeba dispar SAW760 GN=EDI_242090 PE=4
SV=1
Length = 636

Score = 35.0 bits (79), Expect = 3.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1

Query: 391 EALNATGNRQLCSSCKESHLSLLCAVCNKAICMSCLIKESKYT 519
E + T ++ C C ++++S C VCNK +C C +S Y+
Sbjct: 314 EEIYQTLGKKCCVFCHKANISTKCPVCNKTVCDECKNDKSCYS 356


>tr|Q2VPL5|Q2VPL5_XENLA MGC131247 protein OS=Xenopus laevis
GN=MGC131247 PE=2 SV=1
Length = 543

Score = 34.3 bits (77), Expect = 5.8
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +1

Query: 355 FSLDQDIIK---VGIEALNATGNRQL-CSSCKESHLSLLCAVCNKAICMSCLIKESKYTS 522
F+ D I K V E++ A+G R + C K+ L L C C++ C C + E K
Sbjct: 226 FTKDHVITKKEDVSSESVGASGQRPVFCPIHKQEQLKLFCETCDRLTCRDCQLLEHKEHR 285

Query: 523 WQ 528
+Q
Sbjct: 286 YQ 287


>tr|Q28FL8|Q28FL8_XENTR Tripartite motif-containing 33 (Fragment)
OS=Xenopus tropicalis GN=trim33 PE=2 SV=1
Length = 320

Score = 34.3 bits (77), Expect = 5.8
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +1

Query: 355 FSLDQDIIK---VGIEALNATGNRQL-CSSCKESHLSLLCAVCNKAICMSCLIKESKYTS 522
F+ D I K V E++ A+G R + C K+ L L C C++ C C + E K
Sbjct: 222 FTKDHIITKKEDVSSESVGASGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHR 281

Query: 523 WQ 528
+Q
Sbjct: 282 YQ 283


>tr|Q0P4M9|Q0P4M9_XENTR Tripartite motif-containing 33 OS=Xenopus
tropicalis GN=trim33 PE=2 SV=1
Length = 711

Score = 34.3 bits (77), Expect = 5.8
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +1

Query: 355 FSLDQDIIK---VGIEALNATGNRQL-CSSCKESHLSLLCAVCNKAICMSCLIKESKYTS 522
F+ D I K V E++ A+G R + C K+ L L C C++ C C + E K
Sbjct: 222 FTKDHIITKKEDVSSESVGASGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHR 281

Query: 523 WQ 528
+Q
Sbjct: 282 YQ 283


>tr|Q235Z7|Q235Z7_TETTH Putative uncharacterized protein
OS=Tetrahymena thermophila SB210 GN=TTHERM_00093940 PE=4
SV=1
Length = 1404

Score = 34.3 bits (77), Expect = 5.8
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1

Query: 457 LCAVCNKAICMSCLIKESKYTSWQD-FLKHSNCICPDCEQQNIQMHIQLTC 606
+C C+K C +C+ +SK TS D + H N DC + I+ + C
Sbjct: 1185 MCLQCDKQKCQTCIDNKSKCTSCHDGYFLHKNQCLSDCPKGTIKNLVTQNC 1235


>tr|B7PFS9|B7PFS9_IXOSC Transcription intermediary factor 1-alpha,
putative (Fragment) OS=Ixodes scapularis
GN=IscW_ISCW017611 PE=4 SV=1
Length = 907

Score = 34.3 bits (77), Expect = 5.8
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1

Query: 424 CSSCKESHLSLLCAVCNKAICMSCLIKESKYTSWQDFLKHSNCICPDCEQQNIQMH 591
C + K+ L L C C+K C C ++E K +Q I CEQQ ++
Sbjct: 103 CENHKQEQLKLYCETCDKLTCRDCQLQEHKDHKYQ-------FISSACEQQKTSLN 151