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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960340
Clone id TST39A01NGRL0007_C12
Library
Length 582
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_C12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GAAGGTTTGCAGGTTCTCAACAGCGACCGGCCTCTTACCTTCTTTTCCTTGGGTCTTCTG
TGCAGAGTGACCCATTACTAGTAACATCTCTTTTCATAAAAAATGCAGCTGGAAAGCTCG
TCTACCGGTCTCTCGACTCTCTCCATCACCTTCCTTGTTGTCCTCAAATCTTTCTATAGT
GCCAGATGGGTATGGCTTTGAGCGCTGCAGCCCACAGAACCTGAATCTCCCCTTTTGGAT
TGCTGCATTCCAAGCTTGCCCTTGCTGATCAAGCTAAATGCTAGTTGTGCCTTCGTGCAA
GCGTGGAATCAATTCTGATCCCATGGAGAGCTTGCACATTATCTGTGTACTCCTTTGGCT
CACCTTGAGCATTGCCCCTTTCGATGGAGCTCAAGGGTCTGTGCATCAGTACTCTGTTGA
GGAATTTAAAGCAAGCCAGAATGGTTTTCTCTTCTATGGAGGCAGCGAAGGAGTGCATGC
ATCAACATCAACTGATGTGAATGCGGGCGGTATTGCAAATGGCAGATCTTATATCAGATT
TGATACCATCAAATTTAGACGGCCAGCGTTGTCTGCTCATGA
■■Homology search results ■■ -
sp_hit_id A8G2P6
Definition sp|A8G2P6|SYI_PROM2 Isoleucyl-tRNA synthetase OS=Prochlorococcus marinus (strain MIT 9215)
Align length 25
Score (bit) 31.2
E-value 3.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960340|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_C12, 5'
         (582 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A8G2P6|SYI_PROM2 Isoleucyl-tRNA synthetase OS=Prochlorococcus...    31   3.9  

>sp|A8G2P6|SYI_PROM2 Isoleucyl-tRNA synthetase OS=Prochlorococcus
           marinus (strain MIT 9215) GN=ileS PE=3 SV=1
          Length = 965

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 244 SNPKGEIQVLWAAALKAIPIWHYRK 170
           SN  GEIQ+L A  LK    WHY+K
Sbjct: 920 SNELGEIQILKARGLKCDRCWHYQK 944
tr_hit_id A7P6G1
Definition tr|A7P6G1|A7P6G1_VITVI Chromosome chr9 scaffold_7, whole genome shotgun sequence OS=Vitis vinifera
Align length 58
Score (bit) 59.7
E-value 1.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960340|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_C12, 5'
         (582 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7P6G1|A7P6G1_VITVI Chromosome chr9 scaffold_7, whole genome ...    60   1e-07
tr|A5CA53|A5CA53_VITVI Putative uncharacterized protein OS=Vitis...    60   1e-07
tr|Q9C9E6|Q9C9E6_ARATH Putative uncharacterized protein T10D10.5...    59   2e-07
tr|Q56YA4|Q56YA4_ARATH Putative uncharacterized protein At1g7248...    59   2e-07
tr|Q9SYA2|Q9SYA2_ARATH Putative uncharacterized protein T13M11.2...    59   3e-07
tr|Q8GYD0|Q8GYD0_ARATH Putative uncharacterized protein At1g6167...    59   3e-07
tr|A9RV88|A9RV88_PHYPA Predicted protein OS=Physcomitrella paten...    59   3e-07
tr|Q10LU2|Q10LU2_ORYSJ Os03g0334800 protein OS=Oryza sativa subs...    54   8e-06
tr|Q10LU1|Q10LU1_ORYSJ Lung seven transmembrane receptor family ...    54   8e-06
tr|B8ANZ7|B8ANZ7_ORYSI Putative uncharacterized protein OS=Oryza...    54   8e-06
tr|A2Q492|A2Q492_MEDTR Lung seven transmembrane receptor OS=Medi...    53   1e-05
tr|B4FGE8|B4FGE8_MAIZE Putative uncharacterized protein OS=Zea m...    53   1e-05
tr|A9S9W2|A9S9W2_PHYPA Predicted protein OS=Physcomitrella paten...    51   4e-05
tr|Q8H399|Q8H399_ORYSJ Putative membrane protein PTM1 OS=Oryza s...    51   5e-05
tr|Q0D4P4|Q0D4P4_ORYSJ Os07g0614600 protein OS=Oryza sativa subs...    51   5e-05
tr|B7F9V1|B7F9V1_ORYSJ cDNA, clone: J090095G09, full insert sequ...    51   5e-05
tr|A7Q3Y0|A7Q3Y0_VITVI Chromosome chr13 scaffold_48, whole genom...    51   5e-05
tr|A2YNN9|A2YNN9_ORYSI Putative uncharacterized protein OS=Oryza...    51   5e-05
tr|A7QFP3|A7QFP3_VITVI Chromosome chr8 scaffold_88, whole genome...    47   6e-04
tr|A5C8D1|A5C8D1_VITVI Putative uncharacterized protein OS=Vitis...    47   6e-04
tr|Q69P89|Q69P89_ORYSJ Os09g0439700 protein OS=Oryza sativa subs...    47   0.001
tr|A2Z1N7|A2Z1N7_ORYSI Putative uncharacterized protein OS=Oryza...    47   0.001
tr|A4S8K7|A4S8K7_OSTLU Predicted protein OS=Ostreococcus lucimar...    45   0.002
tr|B4F8U5|B4F8U5_MAIZE Putative uncharacterized protein OS=Zea m...    45   0.004
tr|Q00U00|Q00U00_OSTTA Predicted membrane protein (ISS) OS=Ostre...    44   0.009
tr|O04088|O04088_ARATH Membrane protein PTM1 isolog; 58165-60455...    42   0.019
tr|A7PYV2|A7PYV2_VITVI Chromosome chr12 scaffold_38, whole genom...    42   0.019
tr|A3CC61|A3CC61_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.072
tr|Q2R2X1|Q2R2X1_ORYSJ Lung seven transmembrane receptor family ...    40   0.12 
tr|A2ZF63|A2ZF63_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.12 

>tr|A7P6G1|A7P6G1_VITVI Chromosome chr9 scaffold_7, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034052001
           PE=4 SV=1
          Length = 510

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 26/58 (44%), Positives = 38/58 (65%)
 Frame = +2

Query: 392 QGSVHQYSVEEFKASQNGFLFYGGSEGVHASTSTDVNAGGIANGRSYIRFDTIKFRRP 565
           + SVH+Y+   F    N F+ +GGSEG+++S  T      +ANG ++IRF+ IKFRRP
Sbjct: 22  EASVHEYAGVRFVGKGNAFVVHGGSEGIYSSHPTHNTTAAVANGDAFIRFEKIKFRRP 79


>tr|A5CA53|A5CA53_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_033728 PE=4 SV=1
          Length = 510

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 26/58 (44%), Positives = 38/58 (65%)
 Frame = +2

Query: 392 QGSVHQYSVEEFKASQNGFLFYGGSEGVHASTSTDVNAGGIANGRSYIRFDTIKFRRP 565
           + SVH+Y+   F    N F+ +GGSEG+++S  T      +ANG ++IRF+ IKFRRP
Sbjct: 22  EASVHEYAGVRFVGKGNAFVVHGGSEGIYSSHPTHNTTAAVANGDAFIRFEKIKFRRP 79


>tr|Q9C9E6|Q9C9E6_ARATH Putative uncharacterized protein T10D10.5
           OS=Arabidopsis thaliana GN=At1g72480 PE=4 SV=1
          Length = 509

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 33/78 (42%), Positives = 52/78 (66%)
 Frame = +2

Query: 332 LHIICVLLWLTLSIAPFDGAQGSVHQYSVEEFKASQNGFLFYGGSEGVHASTSTDVNAGG 511
           LH++ +LL L+ S+      Q SVH+Y  E F +  N F+F+GGSEG+++S+ +D N   
Sbjct: 3   LHLL-LLLCLSSSLK----VQASVHEYRSERFVSKGNAFVFHGGSEGIYSSSPSD-NFTS 56

Query: 512 IANGRSYIRFDTIKFRRP 565
            ++  S+IRF+ IKF+RP
Sbjct: 57  DSDSVSFIRFEKIKFQRP 74


>tr|Q56YA4|Q56YA4_ARATH Putative uncharacterized protein At1g72480
           OS=Arabidopsis thaliana GN=At1g72480 PE=2 SV=1
          Length = 268

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 33/78 (42%), Positives = 52/78 (66%)
 Frame = +2

Query: 332 LHIICVLLWLTLSIAPFDGAQGSVHQYSVEEFKASQNGFLFYGGSEGVHASTSTDVNAGG 511
           LH++ +LL L+ S+      Q SVH+Y  E F +  N F+F+GGSEG+++S+ +D N   
Sbjct: 3   LHLL-LLLCLSSSLK----VQASVHEYRSERFVSKGNAFVFHGGSEGIYSSSPSD-NFTS 56

Query: 512 IANGRSYIRFDTIKFRRP 565
            ++  S+IRF+ IKF+RP
Sbjct: 57  DSDSVSFIRFEKIKFQRP 74


>tr|Q9SYA2|Q9SYA2_ARATH Putative uncharacterized protein T13M11.2
           OS=Arabidopsis thaliana GN=T13M11.2 PE=4 SV=1
          Length = 534

 Score = 58.5 bits (140), Expect = 3e-07
 Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 4/66 (6%)
 Frame = +2

Query: 392 QGSVHQYSVEEFKASQNGFLFYGGSEGVHASTSTDVNAGGIAN----GRSYIRFDTIKFR 559
           +GS+H+Y+ E+F A  N   F+GGSEG++AS S D+N+   ++    G+S+IRFD + F 
Sbjct: 24  EGSIHEYNNEKFTAKFNARFFHGGSEGLYASKSQDLNSSSSSDNSFKGKSFIRFDDVTFV 83

Query: 560 RPALSA 577
           R   SA
Sbjct: 84  RTKESA 89


>tr|Q8GYD0|Q8GYD0_ARATH Putative uncharacterized protein
           At1g61670/T13M11_2 OS=Arabidopsis thaliana
           GN=At1g61670/T13M11_2 PE=2 SV=1
          Length = 513

 Score = 58.5 bits (140), Expect = 3e-07
 Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 4/66 (6%)
 Frame = +2

Query: 392 QGSVHQYSVEEFKASQNGFLFYGGSEGVHASTSTDVNAGGIAN----GRSYIRFDTIKFR 559
           +GS+H+Y+ E+F A  N   F+GGSEG++AS S D+N+   ++    G+S+IRFD + F 
Sbjct: 24  EGSIHEYNNEKFTAKFNARFFHGGSEGLYASKSQDLNSSSSSDNSFKGKSFIRFDDVTFV 83

Query: 560 RPALSA 577
           R   SA
Sbjct: 84  RTKESA 89


>tr|A9RV88|A9RV88_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_119808 PE=4 SV=1
          Length = 523

 Score = 58.5 bits (140), Expect = 3e-07
 Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
 Frame = +2

Query: 344 CVLLWLTLSIAPFDG--AQGSVHQYSVEEFKASQNGFLFYGGSEGVHASTSTDVNAGGIA 517
           C  +WL  S+          S+H Y   +F A  N F+++GG+EG++AS S  V   G A
Sbjct: 6   CAPVWLLFSVLMLRALHVDASIHTYKNGKFAAESNAFIYWGGNEGLYAS-SNHVQGQGAA 64

Query: 518 NGRSYIRFDTIKFRR 562
           NGRS+I F+++ F R
Sbjct: 65  NGRSFISFESVTFTR 79


>tr|Q10LU2|Q10LU2_ORYSJ Os03g0334800 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0334800 PE=4 SV=1
          Length = 494

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 29/64 (45%), Positives = 38/64 (59%)
 Frame = +2

Query: 386 GAQGSVHQYSVEEFKASQNGFLFYGGSEGVHASTSTDVNAGGIANGRSYIRFDTIKFRRP 565
           GA  SVH+YS   F    N F F+GGSEG++AS  T  ++       S+IRFD++ FRR 
Sbjct: 20  GADASVHEYSGGGFAPRANSFFFHGGSEGLYASDPTSNSSA------SFIRFDSVTFRRT 73

Query: 566 ALSA 577
             SA
Sbjct: 74  QESA 77


>tr|Q10LU1|Q10LU1_ORYSJ Lung seven transmembrane receptor family
           protein, expressed OS=Oryza sativa subsp. japonica
           GN=LOC_Os03g21690 PE=4 SV=1
          Length = 434

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 29/64 (45%), Positives = 38/64 (59%)
 Frame = +2

Query: 386 GAQGSVHQYSVEEFKASQNGFLFYGGSEGVHASTSTDVNAGGIANGRSYIRFDTIKFRRP 565
           GA  SVH+YS   F    N F F+GGSEG++AS  T  ++       S+IRFD++ FRR 
Sbjct: 20  GADASVHEYSGGGFAPRANSFFFHGGSEGLYASDPTSNSSA------SFIRFDSVTFRRT 73

Query: 566 ALSA 577
             SA
Sbjct: 74  QESA 77


>tr|B8ANZ7|B8ANZ7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_11451 PE=4 SV=1
          Length = 482

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 29/64 (45%), Positives = 38/64 (59%)
 Frame = +2

Query: 386 GAQGSVHQYSVEEFKASQNGFLFYGGSEGVHASTSTDVNAGGIANGRSYIRFDTIKFRRP 565
           GA  SVH+YS   F    N F F+GGSEG++AS  T  ++       S+IRFD++ FRR 
Sbjct: 20  GADASVHEYSGGGFAPRANSFFFHGGSEGLYASDPTSNSSA------SFIRFDSVTFRRT 73

Query: 566 ALSA 577
             SA
Sbjct: 74  QESA 77