DK960346 [AcEST]

DK960346
Clone id	TST39A01NGRL0007_C18
Library	TST39
Length	611
Definition	Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_C18. 5' end sequence.
Accession	DK960346
Tissue type	prothallia with plantlets
Developmental stage	gametophytes with sporophytes
Contig ID	-
Sequence	ATCAGTGCATCAAGAGCTCCATGTGTTCCTGCCTGTGACCAATATTTTCCTTTCTACCCC TGACTTTCTATGTTGCCCATCATCCACCTTGGTTTCTTCTTCTGCTCCCTCATCCTAAGG CTTGATAGCAATGCAAGTGTAGCTGTCGCTGCAAGGAAAGCAACAGATTTGATTTGTTTA TCAGGTGCAAGCATCCATCCATACAAATAAAGACCCTTGGATCTAATGCATGGATGGTCA AGAGGCAGAGTTCGCAGGTCATCGATGGGAAGCAGATGATGTAACAATTAGGAAAGGTCT CTGAGATTAGCTTGAATGTCAAGCAAGCTCATGATTGATGCCTAAAGACATAGAGAGTGA AGTGCTGATATTTGAGGGTAAGCGGCTCTATGGCGCATTTCTGCATCGAGTTTATTTGAA TGGTATCTAGTTTCTGACTAAACGGGTAGTGAAACCAGCTCGTTATCTTACAGCCATTCC ATTGATATGTGATTCCTTCATTGCCACACCATGGACGGACCATCTGGTTCTCATGTTGTT CAATATGATGATGACGGCGATGATGATGAGTCAGAGGCTGAAGACCCTTTGTCAGCAATT GCCGTGGTTCA
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	Q8EUC1
Definition	sp\|Q8EUC1\|RS3_MYCPE 30S ribosomal protein S3 OS=Mycoplasma penetrans
Align length	56
Score (bit)	30.0
E-value	9.7
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK960346\|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0007_C18, 5' (611 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|Q8EUC1\|RS3_MYCPE 30S ribosomal protein S3 OS=Mycoplasma penet... 30 9.7 >sp\|Q8EUC1\|RS3_MYCPE 30S ribosomal protein S3 OS=Mycoplasma penetrans GN=rpsC PE=3 SV=1 Length = 417 Score = 30.0 bits (66), Expect = 9.7 Identities = 15/56 (26%), Positives = 30/56 (53%) Frame = +3 Query: 153 KESNRFDLFIRCKHPSIQIKTLGSNAWMVKRQSSQVIDGKQMM*QLGKVSEISLNV 320 + N+ D+FI C P I + SN ++K+Q S ++ G+ +++++NV Sbjct: 60 RTQNKVDIFIHCSQPGIVLGKEMSNLKVLKQQLSYIV---------GRKTKVNVNV 106
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	B7ZBX6
Definition	tr\|B7ZBX6\|B7ZBX6_HUMAN Coiled-coil and C2 domain containing 2B (Fragment) OS=Homo sapiens
Align length	66
Score (bit)	35.8
E-value	2.0
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK960346\|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0007_C18, 5' (611 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|B7ZBX6\|B7ZBX6_HUMAN Coiled-coil and C2 domain containing 2B (... 36 2.0 >tr\|B7ZBX6\|B7ZBX6_HUMAN Coiled-coil and C2 domain containing 2B (Fragment) OS=Homo sapiens GN=CC2D2B PE=4 SV=1 Length = 195 Score = 35.8 bits (81), Expect = 2.0 Identities = 20/66 (30%), Positives = 31/66 (46%) Frame = -2 Query: 541 EQHENQMVRPWCGNEGITYQWNGCKITSWFHYPFSQKLDTIQINSMQKCAIEPLTLKYQH 362 E+HE+ ++ G+ I W GC + +PFS L +I+ + I P+ L Y Sbjct: 4 EKHEDHCLKSCSGHSYIRKNWLGCIV-----FPFSALLQQSEISGTFQVTIPPVLLGYTW 58 Query: 361 FTLYVF 344 YVF Sbjct: 59 SNTYVF 64