DK960367 |
Clone id |
TST39A01NGRL0007_D16 |
Library |
TST39 |
Length |
559 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_D16. 5' end sequence. |
Accession |
DK960367 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL443Contig1 |
Sequence |
GAATGGGGCAGCCATTACCTGACAGTTCAAGGGTATCCACGTCATTGGCAGCATCGGAAG AGGCAAAGCAGGCCGCTTGCTGCAATGGCAACACGTCCAACACTTCTTCTGTGCAGCATG TGTTTGTGTACGGTAACTCCAGGCCTGACATCAGCCCCCCTCTTTCTGGCGAAGCGGTGC AAGCCAGGCGCGCCTGGCTTCTTGGAGGTCGTCTTTACTCCTGCAATTCTGGTGGAGTGA GTCGCCCTGCTTTGAGACTCGAGGAAGCAGGCCATGCTGTTCTCGGTTACACAATGTCTC TTGGTACTTCTGGTAATGTTGGAAGGTTGCTTGACATGTTTGAACGGAGAGAATATTCTC CGGACTTTTATGATCGAGAAGTTGTTGAGGTAGTGACAGAGGGAGGAGAACGTGTGCAAT CCTATGTTTACCATTGCCAAGAAGTTGATCTATCAAATCCTGTGCATGGTGGGGATTGGC TGCAACATGTACAACACTAGGCAGCCATGCGAGTATGATGTAAACTTGCTCGAGTAGCAC TGTTTCTCTATTGTGCTAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q0KL02 |
Definition |
sp|Q0KL02|TRIO_MOUSE Triple functional domain protein OS=Mus musculus |
Align length |
60 |
Score (bit) |
32.0 |
E-value |
2.1 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9P198 |
Definition |
tr|A9P198|A9P198_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
177 |
Score (bit) |
132.0 |
E-value |
1.0e-29 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960367|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0007_D16, 5' (559 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9P198|A9P198_PICSI Putative uncharacterized protein OS=Picea... 132 1e-29 tr|B4F131|B4F131_PROMH ADP-heptose--LPS heptosyltransferase II O... 36 1.2 tr|Q4D804|Q4D804_TRYCR Putative uncharacterized protein OS=Trypa... 36 1.2 tr|B2VL46|B2VL46_ERWT9 ADP-heptose--lps heptosyltransferase II O... 36 1.6 tr|A1JHX5|A1JHX5_YERE8 ADP-heptose--LPS heptosyltransferase II O... 36 1.6 tr|B8GR23|B8GR23_9GAMM Transcription-repair coupling factor OS=T... 35 2.1 tr|A1D8H1|A1D8H1_NEOFI R3H and G-patch domain protein, putative ... 35 2.1 tr|Q66GC8|Q66GC8_YERPS ADP-heptose--LPS heptosyltransferase II O... 34 4.6 tr|Q2NQV6|Q2NQV6_SODGM Lipopolysaccharide heptosyltransferase II... 34 4.6 tr|Q1CD10|Q1CD10_YERPN ADP-heptose--LPS heptosyltransferase II O... 34 4.6 tr|Q1C275|Q1C275_YERPA ADP-heptose--LPS heptosyltransferase II O... 34 4.6 tr|Q1B4D2|Q1B4D2_MYCSS Acyl-CoA dehydrogenase-like protein OS=My... 34 4.6 tr|Q0WKN5|Q0WKN5_YERPE ADP-heptose--LPS heptosyltransferase II O... 34 4.6 tr|B2JYP1|B2JYP1_YERPB Lipopolysaccharide heptosyltransferase II... 34 4.6 tr|B1JQW5|B1JQW5_YERPY Lipopolysaccharide heptosyltransferase II... 34 4.6 tr|A9R682|A9R682_YERPG Lipopolysaccharide heptosyltransferase II... 34 4.6 tr|A8GLC9|A8GLC9_SERP5 Lipopolysaccharide heptosyltransferase II... 34 4.6 tr|A7FCU2|A7FCU2_YERP3 Lipopolysaccharide heptosyltransferase II... 34 4.6 tr|A4TSC9|A4TSC9_YERPP ADP-heptose--LPS heptosyltransferase II O... 34 4.6 tr|A3Q4S2|A3Q4S2_MYCSJ Acyl-CoA dehydrogenase domain protein OS=... 34 4.6 tr|A1UKQ6|A1UKQ6_MYCSK Acyl-CoA dehydrogenase domain protein OS=... 34 4.6 tr|Q8D1S4|Q8D1S4_YERPE ADP-heptose--lps heptosyltransferase II O... 34 4.6 tr|B0HYY9|B0HYY9_YERPE Lipopolysaccharide heptosyltransferase II... 34 4.6 tr|B0HLD7|B0HLD7_YERPE Lipopolysaccharide heptosyltransferase II... 34 4.6 tr|B0HAF3|B0HAF3_YERPE Lipopolysaccharide heptosyltransferase II... 34 4.6 tr|B0GPK6|B0GPK6_YERPE Lipopolysaccharide heptosyltransferase II... 34 4.6 tr|B0GLC4|B0GLC4_YERPE Lipopolysaccharide heptosyltransferase II... 34 4.6 tr|A9ZYY3|A9ZYY3_YERPE Lipopolysaccharide heptosyltransferase II... 34 4.6 tr|A9Z468|A9Z468_YERPE Lipopolysaccharide heptosyltransferase II... 34 4.6 tr|A6BW71|A6BW71_YERPE ADP-heptose--LPS heptosyltransferase II O... 34 4.6
>tr|A9P198|A9P198_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 178
Score = 132 bits (333), Expect = 1e-29 Identities = 75/177 (42%), Positives = 103/177 (58%), Gaps = 16/177 (9%) Frame = +3
Query: 3 MGQPLPDSSRVSTSLAASEEAKQA-----ACCNGNTSNTSSVQ----------HVFVYGN 137 MG PL + S S++AS + A NGN+++++ V H+F+YG+ Sbjct: 1 MGIPLKNEESSSASISASSPVNHSSYHANASANGNSNSSNGVDSSHSSSGAPSHIFLYGD 60
Query: 138 SRPDI-SPPLSGEAVQARRAWLLGGRLYSCNSGGVSRPALRLEEAGHAVLGYTMSLGTSG 314 SRPD S + +Q +RAWLLG RLYS ++GGV R A++LEE+GHAVLGY +S S Sbjct: 61 SRPDAPSNTQNLPGLQNKRAWLLGSRLYSFSTGGVRRAAVKLEESGHAVLGYAVSTNDSM 120
Query: 315 NVGRLLDMFERREYSPDFYDXXXXXXXXXXXXXXQSYVYHCQEVDLSNPVHGGDWLQ 485 + RLLD FERREY PD Y+ QSY+YH +V+ SN + GDWL+ Sbjct: 121 GITRLLDEFERREYLPDLYERDIVEVISERGERLQSYIYHRPDVNPSNLIPTGDWLR 177
>tr|B4F131|B4F131_PROMH ADP-heptose--LPS heptosyltransferase II OS=Proteus mirabilis (strain HI4320) GN=waaF PE=4 SV=1 Length = 350
Score = 36.2 bits (82), Expect = 1.2 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 13/66 (19%) Frame = +3
Query: 18 PDSSRVSTSLAASEEAKQA----ACCNGNTSNTSSVQHVF---------VYGNSRPDISP 158 PD+ +LA +QA A C SN S + HV +YG S PD +P Sbjct: 238 PDAQAACINLAGETSLEQAVNLIAACKAVVSNDSGLMHVAAALERPLVALYGPSSPDFTP 297
Query: 159 PLSGEA 176 PLS +A Sbjct: 298 PLSDKA 303
>tr|Q4D804|Q4D804_TRYCR Putative uncharacterized protein OS=Trypanosoma cruzi GN=Tc00.1047053508149.65 PE=4 SV=1 Length = 253
Score = 36.2 bits (82), Expect = 1.2 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Frame = -2
Query: 237 LHQNCRSKDDLQEARRAWLAPLRQK--EGG*CQAWSYRTQTHAAQKKCWTCCHCSKRPAL 64 L + CR +D L + RRAW + Q GG ++ R Q + CW C C PA+ Sbjct: 172 LSRRCREQDVLTQPRRAWSVTMAQSAVAGG---IFTSRRQQRESCSCCWCRC-CLLWPAM 227
Query: 63 PLPMLPM 43 P+ + P+ Sbjct: 228 PIIVCPL 234
>tr|B2VL46|B2VL46_ERWT9 ADP-heptose--lps heptosyltransferase II OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=waaF PE=4 SV=1 Length = 348
Score = 35.8 bits (81), Expect = 1.6 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 13/58 (22%) Frame = +3
Query: 42 SLAASEEAKQA----ACCNGNTSNTSSVQHVF---------VYGNSRPDISPPLSGEA 176 +LA + +QA ACC+ SN S + H+ +YG S PD +PPLS +A Sbjct: 245 NLAGETQLEQAVILLACCHAIVSNDSGLMHIAAALDRPLIALYGPSSPDFTPPLSEKA 302
>tr|A1JHX5|A1JHX5_YERE8 ADP-heptose--LPS heptosyltransferase II OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rfaF PE=4 SV=1 Length = 354
Score = 35.8 bits (81), Expect = 1.6 Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 14/74 (18%) Frame = +3
Query: 9 QPLPDSSR-VSTSLAASEEAKQA----ACCNGNTSNTSSVQHVF---------VYGNSRP 146 Q L +S+R +LA QA A CN SN S + HV +YG S P Sbjct: 233 QALDESAREYCLNLAGQTSLDQAVVMIAACNAVVSNDSGLMHVAAALNKPLVALYGPSSP 292
Query: 147 DISPPLSGEAVQAR 188 D +PPLS +A R Sbjct: 293 DFTPPLSDKATVIR 306
>tr|B8GR23|B8GR23_9GAMM Transcription-repair coupling factor OS=Thioalkalivibrio sp. HL-EbGR7 GN=Tgr7_1358 PE=4 SV=1 Length = 1157
Score = 35.4 bits (80), Expect = 2.1 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Frame = +3
Query: 183 ARRAWLLGGRLYSCNSGGVSRPALR--LEEAGHAVLGYTMSLGTSGNVGRLLDMFERREY 356 A RAWL G L N + R ALR LE+AG+ + M G G L+D+F Sbjct: 124 APRAWLQGRVLMLANGDRLDRDALRRNLEQAGYHCVSQVMEHGEFAVRGSLIDLFPMGSL 183
Query: 357 SP 362 P Sbjct: 184 EP 185
>tr|A1D8H1|A1D8H1_NEOFI R3H and G-patch domain protein, putative OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) GN=NFIA_071860 PE=4 SV=1 Length = 658
Score = 35.4 bits (80), Expect = 2.1 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 2/82 (2%) Frame = +3
Query: 48 AASEEAKQAACCNGNTSNTSSVQHVF--VYGNSRPDISPPLSGEAVQARRAWLLGGRLYS 221 A S+ K+ A +G TSSV ++ V G S P+I G A+ R W LG L + Sbjct: 578 ARSQNNKKLAKASGGRP-TSSVSYMEGDVVGASAPEIGAENKGRAMLERMGWSLGTPLGA 636
Query: 222 CNSGGVSRPALRLEEAGHAVLG 287 N+ G+ P + + A LG Sbjct: 637 INNKGILLPVAHVVKNSKAGLG 658
>tr|Q66GC8|Q66GC8_YERPS ADP-heptose--LPS heptosyltransferase II OS=Yersinia pseudotuberculosis GN=rfaF PE=4 SV=1 Length = 354
Score = 34.3 bits (77), Expect = 4.6 Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 14/74 (18%) Frame = +3
Query: 9 QPLPDSSR-VSTSLAASEEAKQA----ACCNGNTSNTSSVQHVF---------VYGNSRP 146 Q L D+ R +LA +QA A C+ SN S + HV +YG S P Sbjct: 233 QALSDTDREYCLNLAGQTSLEQAVVLIAACSAVVSNDSGLMHVAAALNKPLVALYGPSSP 292
Query: 147 DISPPLSGEAVQAR 188 D +PPLS +A R Sbjct: 293 DFTPPLSEKATVIR 306
>tr|Q2NQV6|Q2NQV6_SODGM Lipopolysaccharide heptosyltransferase II OS=Sodalis glossinidius (strain morsitans) GN=SG2194 PE=4 SV=1 Length = 349
Score = 34.3 bits (77), Expect = 4.6 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 13/58 (22%) Frame = +3
Query: 42 SLAASEEAKQA----ACCNGNTSNTSSVQHVF---------VYGNSRPDISPPLSGEA 176 +LA +QA A C G SN S + HV +YG S PD +PPLS +A Sbjct: 245 NLAGQTSLEQAVTLIAACQGIVSNDSGLMHVASALDRPLVALYGPSSPDFTPPLSHQA 302
>tr|Q1CD10|Q1CD10_YERPN ADP-heptose--LPS heptosyltransferase II OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=YPN_3793 PE=4 SV=1 Length = 354
Score = 34.3 bits (77), Expect = 4.6 Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 14/74 (18%) Frame = +3
Query: 9 QPLPDSSR-VSTSLAASEEAKQA----ACCNGNTSNTSSVQHVF---------VYGNSRP 146 Q L D+ R +LA +QA A C+ SN S + HV +YG S P Sbjct: 233 QALSDTDREYCLNLAGQTSLEQAVVLIAACSAVVSNDSGLMHVAAALNKPLVALYGPSSP 292
Query: 147 DISPPLSGEAVQAR 188 D +PPLS +A R Sbjct: 293 DFTPPLSEKATVIR 306
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