DK960370 |
Clone id |
TST39A01NGRL0007_D19 |
Library |
TST39 |
Length |
650 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_D19. 5' end sequence. |
Accession |
DK960370 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL3307Contig1 |
Sequence |
CGAGAGATAGAGAGCGCAAAGGTAGGAACAGAGCTTCCTGCCTCTCATTGATTCCAGCCA TGGACTCCAAGGGTGCAGGCGGTAAAGGCGGCAGGGGCAAGCCCAAAAAGAAAGCTGTCT CCAAAACGGTCAAGGCAGGCCTCCAATTTCCTGTGGGTCGTCTCGCTCGCTATCTCAAGA AGGGCCGCTATGCTCAACGCATTGGATCTGGCGCTCCTGTATACCTTGCAGCTGTTCTCG AGTATCTTGCAGCTGAGGTGCTTGAGCTAGCTGGTAATGCTGCCCGTGACAATAAGAAGA ACAGGATAATTCCTCGCCATATTCAACTGGCAATCAGGAATGATGAAGAGCTCGGTAAAT TGCTAAGTGGAGTTACTATTGCGCATGGTGGAGTGTTACCAAATATTCATCAAGTGCTCT TACCTAAGAAGTCTGCAGAGAAGGCAGAGAAGAAAGAGAAAGCCCCTAAGGCTGCTAAGT CTCCTGCCAAGGAGTCAAAGTGATTTTCTCTATCACTTTGTTCTAGGGGGGGTTTTGTAT ATACTTAGCTTTAACAAGGCAGCATTGTGCATTCACCCTTCTTTCTTTTGATTGAGGTTA ACATTTCAAATGCTATTTTAAGATTTCAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q94E96 |
Definition |
sp|Q94E96|H2A5_ORYSJ Probable histone H2A.5 OS=Oryza sativa subsp. japonica |
Align length |
95 |
Score (bit) |
136.0 |
E-value |
8.0e-32 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9STN0 |
Definition |
tr|A9STN0|A9STN0_PHYPA Histone H2A OS=Physcomitrella patens subsp. patens |
Align length |
95 |
Score (bit) |
140.0 |
E-value |
8.0e-32 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960370|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0007_D19, 5' (627 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9STN0|A9STN0_PHYPA Histone H2A OS=Physcomitrella patens subs... 140 8e-32 tr|A9SF19|A9SF19_PHYPA Histone H2A OS=Physcomitrella patens subs... 140 8e-32 tr|A9P1T9|A9P1T9_PICSI Histone H2A OS=Picea sitchensis PE=2 SV=1 137 5e-31 tr|A9NQY2|A9NQY2_PICSI Histone H2A OS=Picea sitchensis PE=2 SV=1 137 5e-31 tr|A5C1C4|A5C1C4_VITVI Histone H2A OS=Vitis vinifera GN=GSVIVT00... 137 5e-31 tr|Q677E7|Q677E7_HYAOR Histone H2A OS=Hyacinthus orientalis PE=2... 136 9e-31 tr|Q677E4|Q677E4_HYAOR Histone H2A OS=Hyacinthus orientalis PE=2... 136 9e-31 tr|B7F7N8|B7F7N8_ORYSJ cDNA clone:J033087I02, full insert sequen... 136 9e-31 tr|B7EN17|B7EN17_ORYSJ cDNA clone:J033075N03, full insert sequen... 136 1e-30 tr|A9P2K6|A9P2K6_PICSI Histone H2A OS=Picea sitchensis PE=2 SV=1 136 1e-30 tr|B6SI29|B6SI29_MAIZE Histone H2A OS=Zea mays PE=2 SV=1 135 2e-30 tr|A9PDX1|A9PDX1_POPTR Histone H2A OS=Populus trichocarpa PE=2 SV=1 135 2e-30 tr|A5AFR3|A5AFR3_VITVI Histone H2A OS=Vitis vinifera GN=GSVIVT00... 135 2e-30 tr|Q9ST30|Q9ST30_SOLME Histone H2A (Fragment) OS=Solanum melonge... 135 3e-30 tr|A5BE97|A5BE97_VITVI Histone H2A OS=Vitis vinifera GN=GSVIVT00... 134 3e-30 tr|Q42680|Q42680_CHLRE Histone H2A OS=Chlamydomonas reinhardtii ... 134 4e-30 tr|A8JJE0|A8JJE0_CHLRE Histone H2A (Fragment) OS=Chlamydomonas r... 134 4e-30 tr|A8IR81|A8IR81_CHLRE Histone H2A OS=Chlamydomonas reinhardtii ... 134 4e-30 tr|A8HWM8|A8HWM8_CHLRE Histone H2A OS=Chlamydomonas reinhardtii ... 134 4e-30 tr|A8HWF6|A8HWF6_CHLRE Histone H2A OS=Chlamydomonas reinhardtii ... 134 4e-30 tr|A8HSB5|A8HSB5_CHLRE Histone H2A OS=Chlamydomonas reinhardtii ... 134 4e-30 tr|B7EDG0|B7EDG0_ORYSJ cDNA clone:J013099N23, full insert sequen... 134 6e-30 tr|B6TH74|B6TH74_MAIZE Histone H2A OS=Zea mays PE=2 SV=1 134 6e-30 tr|B6SJU3|B6SJU3_MAIZE Histone H2A OS=Zea mays PE=2 SV=1 134 6e-30 tr|B6SIR8|B6SIR8_MAIZE Histone H2A OS=Zea mays PE=2 SV=1 134 6e-30 tr|B6SHX9|B6SHX9_MAIZE Histone H2A OS=Zea mays PE=2 SV=1 134 6e-30 tr|B4FU52|B4FU52_MAIZE Histone H2A OS=Zea mays PE=2 SV=1 134 6e-30 tr|B6TMR1|B6TMR1_MAIZE Histone H2A OS=Zea mays PE=2 SV=1 133 8e-30 tr|B6T832|B6T832_MAIZE Histone H2A OS=Zea mays PE=2 SV=1 133 8e-30 tr|B6T7E7|B6T7E7_MAIZE Histone H2A OS=Zea mays PE=2 SV=1 133 8e-30
>tr|A9STN0|A9STN0_PHYPA Histone H2A OS=Physcomitrella patens subsp. patens GN=HTA1504 PE=3 SV=1 Length = 148
Score = 140 bits (352), Expect = 8e-32 Identities = 71/95 (74%), Positives = 75/95 (78%) Frame = +3
Query: 138 GLQFPVGRLARYLKKGRYAQRIGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPR 317 GLQFPVGRL RYLKKGRYAQR+GSGAP GNA+RDNKK+RIIPR Sbjct: 24 GLQFPVGRLGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNASRDNKKSRIIPR 83
Query: 318 HIQLAIRNDEELGKLLSGVTIAHGGVLPNIHQVLL 422 HIQLAIRNDEELGKLLSGVTIA+GGVLPNIH VLL Sbjct: 84 HIQLAIRNDEELGKLLSGVTIAYGGVLPNIHSVLL 118
>tr|A9SF19|A9SF19_PHYPA Histone H2A OS=Physcomitrella patens subsp. patens GN=HTA1503 PE=3 SV=1 Length = 148
Score = 140 bits (352), Expect = 8e-32 Identities = 71/95 (74%), Positives = 75/95 (78%) Frame = +3
Query: 138 GLQFPVGRLARYLKKGRYAQRIGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPR 317 GLQFPVGRL RYLKKGRYAQR+GSGAP GNA+RDNKK+RIIPR Sbjct: 24 GLQFPVGRLGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNASRDNKKSRIIPR 83
Query: 318 HIQLAIRNDEELGKLLSGVTIAHGGVLPNIHQVLL 422 HIQLAIRNDEELGKLLSGVTIA+GGVLPNIH VLL Sbjct: 84 HIQLAIRNDEELGKLLSGVTIAYGGVLPNIHSVLL 118
>tr|A9P1T9|A9P1T9_PICSI Histone H2A OS=Picea sitchensis PE=2 SV=1 Length = 141
Score = 137 bits (345), Expect = 5e-31 Identities = 68/95 (71%), Positives = 75/95 (78%) Frame = +3
Query: 138 GLQFPVGRLARYLKKGRYAQRIGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPR 317 GLQFPVGR+ARYLKKGRYAQR+G+GAP GNAARDNKKNRIIPR Sbjct: 31 GLQFPVGRIARYLKKGRYAQRLGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPR 90
Query: 318 HIQLAIRNDEELGKLLSGVTIAHGGVLPNIHQVLL 422 H+ LA+RNDEELGKL++GVTIA GGVLPNIHQVLL Sbjct: 91 HLLLAVRNDEELGKLMAGVTIASGGVLPNIHQVLL 125
>tr|A9NQY2|A9NQY2_PICSI Histone H2A OS=Picea sitchensis PE=2 SV=1 Length = 141
Score = 137 bits (345), Expect = 5e-31 Identities = 68/95 (71%), Positives = 75/95 (78%) Frame = +3
Query: 138 GLQFPVGRLARYLKKGRYAQRIGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPR 317 GLQFPVGR+ARYLKKGRYAQR+G+GAP GNAARDNKKNRIIPR Sbjct: 31 GLQFPVGRIARYLKKGRYAQRLGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPR 90
Query: 318 HIQLAIRNDEELGKLLSGVTIAHGGVLPNIHQVLL 422 H+ LA+RNDEELGKL++GVTIA GGVLPNIHQVLL Sbjct: 91 HLLLAVRNDEELGKLMAGVTIASGGVLPNIHQVLL 125
>tr|A5C1C4|A5C1C4_VITVI Histone H2A OS=Vitis vinifera GN=GSVIVT00023623001 PE=3 SV=1 Length = 138
Score = 137 bits (345), Expect = 5e-31 Identities = 69/95 (72%), Positives = 74/95 (77%) Frame = +3
Query: 138 GLQFPVGRLARYLKKGRYAQRIGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPR 317 GLQFPVGR+AR+LKKGRYAQR+GSG+P GNAARDNKKNRIIPR Sbjct: 26 GLQFPVGRIARFLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPR 85
Query: 318 HIQLAIRNDEELGKLLSGVTIAHGGVLPNIHQVLL 422 HIQLA+RNDEELGKLL GVTIA GGVLPNIHQ LL Sbjct: 86 HIQLAVRNDEELGKLLGGVTIASGGVLPNIHQNLL 120
>tr|Q677E7|Q677E7_HYAOR Histone H2A OS=Hyacinthus orientalis PE=2 SV=1 Length = 152
Score = 136 bits (343), Expect = 9e-31 Identities = 68/95 (71%), Positives = 74/95 (77%) Frame = +3
Query: 138 GLQFPVGRLARYLKKGRYAQRIGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPR 317 GLQFPVGRL RYLKKGRYAQR+G+GAP GNAARDNKKNRIIPR Sbjct: 31 GLQFPVGRLGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPR 90
Query: 318 HIQLAIRNDEELGKLLSGVTIAHGGVLPNIHQVLL 422 H+ LA+RNDEELGKLL+GVTIAHGGVLPNI+ VLL Sbjct: 91 HVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLL 125
>tr|Q677E4|Q677E4_HYAOR Histone H2A OS=Hyacinthus orientalis PE=2 SV=1 Length = 152
Score = 136 bits (343), Expect = 9e-31 Identities = 68/95 (71%), Positives = 74/95 (77%) Frame = +3
Query: 138 GLQFPVGRLARYLKKGRYAQRIGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPR 317 GLQFPVGRL RYLKKGRYAQR+G+GAP GNAARDNKKNRIIPR Sbjct: 31 GLQFPVGRLGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPR 90
Query: 318 HIQLAIRNDEELGKLLSGVTIAHGGVLPNIHQVLL 422 H+ LA+RNDEELGKLL+GVTIAHGGVLPNI+ VLL Sbjct: 91 HVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLL 125
>tr|B7F7N8|B7F7N8_ORYSJ cDNA clone:J033087I02, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 159
Score = 136 bits (343), Expect = 9e-31 Identities = 69/95 (72%), Positives = 74/95 (77%) Frame = +3
Query: 138 GLQFPVGRLARYLKKGRYAQRIGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPR 317 GLQFPVGR+ RYLKKGRYAQRIG+GAP GNAARDNKKNRIIPR Sbjct: 36 GLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPR 95
Query: 318 HIQLAIRNDEELGKLLSGVTIAHGGVLPNIHQVLL 422 H+ LAIRNDEELGKLL+GVTIAHGGVLPNI+ VLL Sbjct: 96 HVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLL 130
>tr|B7EN17|B7EN17_ORYSJ cDNA clone:J033075N03, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 156
Score = 136 bits (342), Expect = 1e-30 Identities = 68/95 (71%), Positives = 74/95 (77%) Frame = +3
Query: 138 GLQFPVGRLARYLKKGRYAQRIGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPR 317 GLQFPVGR+ RYLKKGRYAQR+G+GAP GNAARDNKKNRIIPR Sbjct: 33 GLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPR 92
Query: 318 HIQLAIRNDEELGKLLSGVTIAHGGVLPNIHQVLL 422 H+ LAIRNDEELGKLL+GVTIAHGGVLPNI+ VLL Sbjct: 93 HVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLL 127
>tr|A9P2K6|A9P2K6_PICSI Histone H2A OS=Picea sitchensis PE=2 SV=1 Length = 142
Score = 136 bits (342), Expect = 1e-30 Identities = 68/95 (71%), Positives = 73/95 (76%) Frame = +3
Query: 138 GLQFPVGRLARYLKKGRYAQRIGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPR 317 GLQFPVGRLARYLK GRYA+R+G GAP GNAARDNKKNRIIPR Sbjct: 30 GLQFPVGRLARYLKNGRYAKRVGIGAPIFLAAVLEYLAAEVLELAGNAARDNKKNRIIPR 89
Query: 318 HIQLAIRNDEELGKLLSGVTIAHGGVLPNIHQVLL 422 HIQLA+RND+ELGKLL VTIAHGGV+PNIHQVLL Sbjct: 90 HIQLAVRNDDELGKLLGKVTIAHGGVIPNIHQVLL 124
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