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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960371
Clone id TST39A01NGRL0007_D20
Library
Length 609
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_D20. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CACACACACACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGGGCGCATTTGGCAATG
GGGATCATCAAGTATGAGGAGCCGAAATATCCTGTTATCAACAGTGATCCTTCTGTCTCC
ATGATTTACTCCAACTTCAACACTACCGACTACTGCCGCATCACTACCTTCACCTCCGCT
TCCCTGGTCTACGGCTACCTTGCAGGCGTGAGTTGGAATGTGAGAGGCCCATCAATGTAC
ACAGCTGGCTTGCTGGGATTAGCTGGAGGAATAATGTATGCTTATCAGAATTCGGCATTC
CGGCTGATGGGACACTATCCCAATTATGAAGATCTTCCAAAATACAAGCTCAAAAAGTAG
TCCATCCTAGACATTGAATTTTATAGCACGTGTTCTAGAATTTTAAATGATATACATTGC
TTAAGGATGGTGGTGCTATTTCTCAGTTTCCCCACTATCATGCTCTTTTATCAGCATGTT
CTTTCATAATTTAAAGAGGGATGTTTCTCATGTGTGAGTGTTCTTCCTAATTGACGGTTT
ATTTTGTAGTGAAAGTTTTAAGCCCATTCATTTTCTTGATGCANAATGATTTCAGTAAAA
AAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q02854
Definition sp|Q02854|NUXM_NEUCR NADH-ubiquinone oxidoreductase 21 kDa subunit OS=Neurospora crassa
Align length 97
Score (bit) 35.4
E-value 0.22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960371|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_D20, 5'
         (596 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q02854|NUXM_NEUCR NADH-ubiquinone oxidoreductase 21 kDa subun...    35   0.22 

>sp|Q02854|NUXM_NEUCR NADH-ubiquinone oxidoreductase 21 kDa subunit
           OS=Neurospora crassa GN=nuo-21 PE=1 SV=1
          Length = 189

 Score = 35.4 bits (80), Expect = 0.22
 Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
 Frame = +1

Query: 64  IIKYEEPKYPVINSDPSVSMIYSNFNTTDYCRITTFTSASLVYGYL------AGVSWNVR 225
           I K     YP+I++DP    +      +DY   T   +A     YL      +GV     
Sbjct: 11  ISKTLNTNYPLIDNDPHFRRVIGYARPSDYVHGTVAGAAGPGLLYLMEKMAPSGVGKGGF 70

Query: 226 GPSMYTAGLLGLAGGIMYAYQNSAFRLMGHYPNYEDL 336
             +M  A  +G  GG +Y YQ S  R  G   N  ++
Sbjct: 71  PKAMRLATAVGFFGGFLYFYQRSILRFYGMSENAREV 107
tr_hit_id A9NJY0
Definition tr|A9NJY0|A9NJY0_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 92
Score (bit) 112.0
E-value 2.0e-23
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960371|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_D20, 5'
         (596 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NJY0|A9NJY0_PICSI Putative uncharacterized protein OS=Picea...   112   2e-23
tr|A9STK6|A9STK6_PHYPA Predicted protein OS=Physcomitrella paten...   111   3e-23
tr|A5BYX3|A5BYX3_VITVI Putative uncharacterized protein OS=Vitis...   110   5e-23
tr|A7P0E7|A7P0E7_VITVI Chromosome chr19 scaffold_4, whole genome...   109   1e-22
tr|A9PA69|A9PA69_POPTR Putative uncharacterized protein OS=Popul...   108   2e-22
tr|Q8LE57|Q8LE57_ARATH Putative uncharacterized protein OS=Arabi...   104   4e-21
tr|Q6ZKB0|Q6ZKB0_ORYSJ Putative uncharacterized protein OJ1124_B...   104   4e-21
tr|Q0J5I8|Q0J5I8_ORYSJ Os08g0431500 protein (Fragment) OS=Oryza ...   104   4e-21
tr|A3BTD8|A3BTD8_ORYSJ cDNA clone:J023121F15, full insert sequen...   104   4e-21
tr|A2YVH0|A2YVH0_ORYSI Putative uncharacterized protein OS=Oryza...   104   4e-21
tr|B6SRG1|B6SRG1_MAIZE Putative uncharacterized protein OS=Zea m...   103   6e-21
tr|Q84W12|Q84W12_ARATH At4g16450 (Putative uncharacterized prote...   101   3e-20
tr|O23489|O23489_ARATH Putative uncharacterized protein dl4250w ...   101   4e-20
tr|B8RIL5|B8RIL5_PSEMZ Putative uncharacterized protein 207 (Fra...   100   5e-20
tr|B8RIL3|B8RIL3_9CONI Putative uncharacterized protein 207 (Fra...   100   6e-20
tr|B8RIK9|B8RIK9_PINPE Putative uncharacterized protein 207 (Fra...   100   6e-20
tr|B8RIK7|B8RIK7_PINLA Putative uncharacterized protein 207 (Fra...   100   6e-20
tr|B8RIL4|B8RIL4_PICAB Putative uncharacterized protein 207 (Fra...   100   1e-19
tr|B8RIL2|B8RIL2_PINRE Putative uncharacterized protein 207 (Fra...    97   9e-19
tr|B8RIL1|B8RIL1_PINPO Putative uncharacterized protein 207 (Fra...    97   9e-19
tr|B8RIL0|B8RIL0_PINPS Putative uncharacterized protein 207 (Fra...    97   9e-19
tr|B8RIK5|B8RIK5_PINBN Putative uncharacterized protein 207 (Fra...    97   9e-19
tr|B8RIK8|B8RIK8_9CONI Putative uncharacterized protein 207 (Fra...    95   3e-18
tr|B8RIK6|B8RIK6_PINCO Putative uncharacterized protein 207 (Fra...    95   3e-18
tr|B8RHS1|B8RHS1_PINSY Putative uncharacterized protein 207 (Fra...    95   3e-18
tr|B8BVH7|B8BVH7_THAPS Predicted protein OS=Thalassiosira pseudo...    56   2e-06
tr|Q4P5K7|Q4P5K7_USTMA Putative uncharacterized protein OS=Ustil...    52   2e-05
tr|Q2HS27|Q2HS27_MEDTR Putative uncharacterized protein OS=Medic...    47   6e-04
tr|A8N9C0|A8N9C0_COPC7 Putative uncharacterized protein OS=Copri...    46   0.002
tr|A8Q3H0|A8Q3H0_MALGO Putative uncharacterized protein OS=Malas...    45   0.002

>tr|A9NJY0|A9NJY0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 108

 Score =  112 bits (279), Expect = 2e-23
 Identities = 52/92 (56%), Positives = 71/92 (77%)
 Frame = +1

Query: 79  EPKYPVINSDPSVSMIYSNFNTTDYCRITTFTSASLVYGYLAGVSWNVRGPSMYTAGLLG 258
           +P+YPVI+ +P  +   +NF+  DY R+TT TSAS+ +GYLAG + ++RGPSM TAG++G
Sbjct: 13  KPEYPVIDKNPPFTKAVANFSFLDYLRMTTITSASVPFGYLAGGNCSLRGPSMVTAGIIG 72

Query: 259 LAGGIMYAYQNSAFRLMGHYPNYEDLPKYKLK 354
           L GG M+AYQNSA RLMG +PN ED+ +YK K
Sbjct: 73  LMGGFMFAYQNSAGRLMGLFPNEEDVARYKKK 104


>tr|A9STK6|A9STK6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_188302 PE=4 SV=1
          Length = 97

 Score =  111 bits (278), Expect = 3e-23
 Identities = 55/96 (57%), Positives = 70/96 (72%)
 Frame = +1

Query: 58  MGIIKYEEPKYPVINSDPSVSMIYSNFNTTDYCRITTFTSASLVYGYLAGVSWNVRGPSM 237
           MGI   +EPK+PVI  +P+ S   SNF+ +DY RI  FT  SL  GYLAG S N+RGPSM
Sbjct: 1   MGIF-LDEPKFPVIERNPTASSTISNFSFSDYVRIAAFTGGSLPVGYLAGGSVNIRGPSM 59

Query: 238 YTAGLLGLAGGIMYAYQNSAFRLMGHYPNYEDLPKY 345
           YTAG++GL GG MYAYQ SA RLMG +PN +++ ++
Sbjct: 60  YTAGIIGLMGGFMYAYQCSAGRLMGMFPNDDEVARH 95


>tr|A5BYX3|A5BYX3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_010564 PE=4 SV=1
          Length = 116

 Score =  110 bits (276), Expect = 5e-23
 Identities = 49/101 (48%), Positives = 70/101 (69%)
 Frame = +1

Query: 46  AHLAMGIIKYEEPKYPVINSDPSVSMIYSNFNTTDYCRITTFTSASLVYGYLAGVSWNVR 225
           A++   I   E+P+YPVI+ +P ++ +  NF+  DY R  T T  S+  GYL+G+  N+R
Sbjct: 15  ANMNTDITASEKPQYPVIDRNPPLTKVVGNFSALDYLRFVTITGVSVTVGYLSGIKPNIR 74

Query: 226 GPSMYTAGLLGLAGGIMYAYQNSAFRLMGHYPNYEDLPKYK 348
           GPSM T GL+G+ GG MYAYQNSA RLMG +PN +++ +YK
Sbjct: 75  GPSMVTGGLIGIMGGFMYAYQNSAGRLMGFFPNEDEVARYK 115


>tr|A7P0E7|A7P0E7_VITVI Chromosome chr19 scaffold_4, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00027202001
           PE=4 SV=1
          Length = 100

 Score =  109 bits (273), Expect = 1e-22
 Identities = 47/91 (51%), Positives = 66/91 (72%)
 Frame = +1

Query: 76  EEPKYPVINSDPSVSMIYSNFNTTDYCRITTFTSASLVYGYLAGVSWNVRGPSMYTAGLL 255
           E+P+YPVI+ +P ++ +  NF+  DY R  T T  S+  GYL+G+  N+RGPSM T GL+
Sbjct: 9   EKPQYPVIDRNPPLTKVVGNFSALDYLRFVTITGVSVTVGYLSGIKPNIRGPSMVTGGLI 68

Query: 256 GLAGGIMYAYQNSAFRLMGHYPNYEDLPKYK 348
           G+ GG MYAYQNSA RLMG +PN +++ +YK
Sbjct: 69  GIMGGFMYAYQNSAGRLMGFFPNEDEVARYK 99


>tr|A9PA69|A9PA69_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 105

 Score =  108 bits (271), Expect = 2e-22
 Identities = 47/90 (52%), Positives = 64/90 (71%)
 Frame = +1

Query: 79  EPKYPVINSDPSVSMIYSNFNTTDYCRITTFTSASLVYGYLAGVSWNVRGPSMYTAGLLG 258
           +P+YPVI+ +P  + +  NFNT DYCR  T T  S+  GYL+G+   ++GPSM T GL+G
Sbjct: 10  KPEYPVIDRNPEFTKVVGNFNTLDYCRFITLTGVSVTVGYLSGIKPGIKGPSMVTGGLIG 69

Query: 259 LAGGIMYAYQNSAFRLMGHYPNYEDLPKYK 348
           L GG MYAYQNSA RLMG +PN  ++ +Y+
Sbjct: 70  LMGGFMYAYQNSAGRLMGFFPNEGEVARYQ 99


>tr|Q8LE57|Q8LE57_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 106

 Score =  104 bits (259), Expect = 4e-21
 Identities = 46/94 (48%), Positives = 65/94 (69%)
 Frame = +1

Query: 64  IIKYEEPKYPVINSDPSVSMIYSNFNTTDYCRITTFTSASLVYGYLAGVSWNVRGPSMYT 243
           I   E+P+YPV++ +P+ + +  NF+T DY R +T T  S+  GYL+G+   ++GPSM T
Sbjct: 5   ITALEKPQYPVVDRNPAFTKVVGNFSTLDYLRFSTITGISVTVGYLSGIKPGIKGPSMVT 64

Query: 244 AGLLGLAGGIMYAYQNSAFRLMGHYPNYEDLPKY 345
            GL+GL GG MYAYQNSA RLMG +PN  ++  Y
Sbjct: 65  GGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVASY 98


>tr|Q6ZKB0|Q6ZKB0_ORYSJ Putative uncharacterized protein
           OJ1124_B05.23 (Putative uncharacterized protein
           OJ1111_B08.14) OS=Oryza sativa subsp. japonica
           GN=OJ1124_B05.23 PE=4 SV=1
          Length = 187

 Score =  104 bits (259), Expect = 4e-21
 Identities = 44/92 (47%), Positives = 66/92 (71%)
 Frame = +1

Query: 79  EPKYPVINSDPSVSMIYSNFNTTDYCRITTFTSASLVYGYLAGVSWNVRGPSMYTAGLLG 258
           +P+YPV++ +P  + +  NF+  DY R++T ++ S+  GYL+G+   +RGPSM T GL+G
Sbjct: 95  KPEYPVVDRNPPFTKVVGNFSALDYLRLSTISAVSVTVGYLSGIKPGIRGPSMVTGGLIG 154

Query: 259 LAGGIMYAYQNSAFRLMGHYPNYEDLPKYKLK 354
           + GG MYAYQNSA RLMG +PN  ++ +YK K
Sbjct: 155 VMGGFMYAYQNSAGRLMGFFPNDSEVARYKYK 186


>tr|Q0J5I8|Q0J5I8_ORYSJ Os08g0431500 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os08g0431500 PE=4 SV=1
          Length = 138

 Score =  104 bits (259), Expect = 4e-21
 Identities = 44/92 (47%), Positives = 66/92 (71%)
 Frame = +1

Query: 79  EPKYPVINSDPSVSMIYSNFNTTDYCRITTFTSASLVYGYLAGVSWNVRGPSMYTAGLLG 258
           +P+YPV++ +P  + +  NF+  DY R++T ++ S+  GYL+G+   +RGPSM T GL+G
Sbjct: 46  KPEYPVVDRNPPFTKVVGNFSALDYLRLSTISAVSVTVGYLSGIKPGIRGPSMVTGGLIG 105

Query: 259 LAGGIMYAYQNSAFRLMGHYPNYEDLPKYKLK 354
           + GG MYAYQNSA RLMG +PN  ++ +YK K
Sbjct: 106 VMGGFMYAYQNSAGRLMGFFPNDSEVARYKYK 137


>tr|A3BTD8|A3BTD8_ORYSJ cDNA clone:J023121F15, full insert sequence
           OS=Oryza sativa subsp. japonica GN=OsJ_026310 PE=4 SV=1
          Length = 102

 Score =  104 bits (259), Expect = 4e-21
 Identities = 44/92 (47%), Positives = 66/92 (71%)
 Frame = +1

Query: 79  EPKYPVINSDPSVSMIYSNFNTTDYCRITTFTSASLVYGYLAGVSWNVRGPSMYTAGLLG 258
           +P+YPV++ +P  + +  NF+  DY R++T ++ S+  GYL+G+   +RGPSM T GL+G
Sbjct: 10  KPEYPVVDRNPPFTKVVGNFSALDYLRLSTISAVSVTVGYLSGIKPGIRGPSMVTGGLIG 69

Query: 259 LAGGIMYAYQNSAFRLMGHYPNYEDLPKYKLK 354
           + GG MYAYQNSA RLMG +PN  ++ +YK K
Sbjct: 70  VMGGFMYAYQNSAGRLMGFFPNDSEVARYKYK 101


>tr|A2YVH0|A2YVH0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_29327 PE=4 SV=1
          Length = 102

 Score =  104 bits (259), Expect = 4e-21
 Identities = 44/92 (47%), Positives = 66/92 (71%)
 Frame = +1

Query: 79  EPKYPVINSDPSVSMIYSNFNTTDYCRITTFTSASLVYGYLAGVSWNVRGPSMYTAGLLG 258
           +P+YPV++ +P  + +  NF+  DY R++T ++ S+  GYL+G+   +RGPSM T GL+G
Sbjct: 10  KPEYPVVDRNPPFTKVVGNFSALDYLRLSTISAVSVTVGYLSGIKPGIRGPSMVTGGLIG 69

Query: 259 LAGGIMYAYQNSAFRLMGHYPNYEDLPKYKLK 354
           + GG MYAYQNSA RLMG +PN  ++ +YK K
Sbjct: 70  VMGGFMYAYQNSAGRLMGFFPNDSEVARYKYK 101