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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960374
Clone id TST39A01NGRL0007_D23
Library
Length 636
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_D23. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GTGAGAAGATTAGTCGCACAATTCGATGGCCAGGTGCATGAGCTGGAGAGGGACTTGGAT
GATTTTAATGAACAGATAACAGACTTCTACAATCGGATTGTTTCAGCTAGGTTAGAAATA
TACGACTTGATGAGCAATACCACGGTCTAATAGTTTGATTGGGAATGGGATTTCTTTAGA
AATACAGTTTCAATTGATTTAGTTTTCTATATTGCGGGCTGATGTCCGTAAAGAATACTA
TTCTGGCGATAGATCATGATGCAGTTCTGTTGTATATTGCAAGGCAGGCTCGACGGGTGA
TATGCAGCTATGAGTGGTGGGAAAATTTGTATCGAATAAGACCAACTTGCTTGTTACCTT
GCCATCATGCTACCCCTCATTTCTATTCACTTGTCCTTCTTGTGAACGCCAGAGCTAACT
TTGTTTGCTGATAAAGTGGGCTCTCGAGGGACTTCTCAAACTTTGCTTTTGCAGATTGCA
ACATTTGTCTTGGTTATCCTTCCATTCGCATAGTGTGGCCTGCTTAGTATATGAAGTTAC
TATCTGTATGCTGCTTTGCGATATTTCTTAAGGCTCTTCAAAACCTCAGTTTTTGACGCG
CATAGACGCCACCAGAGAGAGGAGGTGGGTGGCAAT
■■Homology search results ■■ -
sp_hit_id Q039E2
Definition sp|Q039E2|TRMFO_LACC3 Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase trmFO OS=Lactobacillus casei (strain ATCC 334)
Align length 43
Score (bit) 30.4
E-value 8.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960374|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_D23, 5'
         (636 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q039E2|TRMFO_LACC3 Methylenetetrahydrofolate--tRNA-(uracil-5-...    30   8.0  

>sp|Q039E2|TRMFO_LACC3
           Methylenetetrahydrofolate--tRNA-(uracil-5-)-
           methyltransferase trmFO OS=Lactobacillus casei (strain
           ATCC 334) GN=trmFO PE=3 SV=1
          Length = 439

 Score = 30.4 bits (67), Expect = 8.0
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +3

Query: 324 NLYRIRPTCLLPCHHATPHFYSLVLLVNARANFVC**SGLSRD 452
           NLY +RP  + P HH T +F  LV   + RAN +    GL ++
Sbjct: 28  NLYEMRPVKMTPAHH-TSNFAELVCTNSLRANQITNAVGLLKE 69
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960374|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_D23, 5'
         (636 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******