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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960377
Clone id TST39A01NGRL0007_E02
Library
Length 661
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_E02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GAGTGTAGGGACAGCTCCATGGAGTTTGGGCGTTTCGCTCACGGGCCAACCTGCGTTGCG
CCATAGCTCACGCAGCCGACCACTAGTGAGCGTGCCATTGTCGCTCTCTTTTCCCCGTCT
CGTCACAGCTGCTGCGGCTGCCGCTGCGACTTCTCAAGTTGCTGCTGACGCCCCTCCCGC
CTCTTCTCCTCCTCTCGCTTCTCCTCCGTCTCCCTCTTCTGTTGAAGATGAAGAGGGCGG
TCCTATCCAGCTCCCAGATTCTGGGGACCCCTTGTCCTTTACGTCTGAAAAGATTACACC
TCTGCAGTCTGCAGCGAGCATCTTGCTCACTGGAATTATTGCAGTTCTCCTCTACCGGTC
CTTGCGTCGCAGGATGAAGCTCGCCAAGGAAATGAAAGTTCGCTCGACTGGTTTAGAAAA
CATTAATGAAGCACCCAAGAACGCATCTGTGGTGATTGAGAAAACAGAGAAGACAATGGC
AAAGGCTCCTCTGACGGCCTGGCAAACTTTCCAAGGGGCAGTCATTGCTGGTGCCATTGC
TTTTGTTCTCTACAGGTTCGCAACCTATGTGGAAGCAGGATTTGCCTTAAAACCTGTGTC
AAATGTTTATACGATACGACAGTTGACAATAACCGTCAGGACGATCTTGAATGGAATGTG
C
■■Homology search results ■■ -
sp_hit_id O28575
Definition sp|O28575|Y1698_ARCFU UPF0098 protein AF_1698 OS=Archaeoglobus fulgidus
Align length 44
Score (bit) 30.4
E-value 8.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960377|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_E02, 5'
         (661 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O28575|Y1698_ARCFU UPF0098 protein AF_1698 OS=Archaeoglobus f...    30   8.7  
sp|Q6ZR08|DNHD2_HUMAN Dynein heavy chain domain-containing prote...    30   8.7  

>sp|O28575|Y1698_ARCFU UPF0098 protein AF_1698 OS=Archaeoglobus
           fulgidus GN=AF_1698 PE=3 SV=1
          Length = 287

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +1

Query: 454 D*ENREDNGKGSSDGLANFPRGSHCWCHCFCSLQVRNLCGSRIC 585
           D   R + G+G       F   S  +C C C+ ++    G ++C
Sbjct: 6   DYSQRREEGEGRGSNFTRFSCWSCDFCRCLCNAEIAGESGGKVC 49


>sp|Q6ZR08|DNHD2_HUMAN Dynein heavy chain domain-containing protein
           2 OS=Homo sapiens GN=DNHD2 PE=2 SV=1
          Length = 1093

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 262 WGPLVLYV*KDYTSAVCSEHLAHW--NYCSSPLPVLASQDEARQGNE 396
           W P++  + +D+TS  C+     W  +Y SS  PV   Q+  +  NE
Sbjct: 563 WMPMLEKICEDFTSETCNSSFRLWLTSYPSSKFPVTILQNGVKMTNE 609
tr_hit_id A9SV52
Definition tr|A9SV52|A9SV52_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 147
Score (bit) 123.0
E-value 9.0e-27
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960377|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_E02, 5'
         (661 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SV52|A9SV52_PHYPA Predicted protein OS=Physcomitrella paten...   123   9e-27
tr|Q8L954|Q8L954_ARATH Putative uncharacterized protein OS=Arabi...   115   2e-24
tr|Q2HIU0|Q2HIU0_ARATH At3g15110 OS=Arabidopsis thaliana PE=2 SV=1    115   3e-24
tr|A9PIQ9|A9PIQ9_POPJC Putative uncharacterized protein OS=Popul...   114   5e-24
tr|A7P1U3|A7P1U3_VITVI Chromosome chr19 scaffold_4, whole genome...   114   5e-24
tr|Q6Z0W7|Q6Z0W7_ORYSJ Os02g0307800 protein OS=Oryza sativa subs...   111   3e-23
tr|B6T671|B6T671_MAIZE Putative uncharacterized protein OS=Zea m...   110   8e-23
tr|B7FJ85|B7FJ85_MEDTR Putative uncharacterized protein OS=Medic...   110   1e-22
tr|B8AG73|B8AG73_ORYSI Putative uncharacterized protein OS=Oryza...    93   1e-17
tr|A4RWZ1|A4RWZ1_OSTLU Predicted protein (Fragment) OS=Ostreococ...    69   3e-10
tr|Q9LIM4|Q9LIM4_ARATH Arabidopsis thaliana genomic DNA, chromos...    63   1e-08
tr|A8IF56|A8IF56_CHLRE Predicted protein (Fragment) OS=Chlamydom...    53   2e-05
tr|B8HWT7|B8HWT7_9CHRO Putative uncharacterized protein OS=Cyano...    45   0.004
tr|B1XI35|B1XI35_SYNP2 Conserved hypothetical membrane protein O...    41   0.058
tr|B0C4K0|B0C4K0_ACAM1 Putative uncharacterized protein OS=Acary...    41   0.075
tr|B4WM34|B4WM34_9SYNE Putative uncharacterized protein OS=Synec...    40   0.098
tr|A0YKB3|A0YKB3_9CYAN Putative uncharacterized protein OS=Lyngb...    39   0.22 
tr|B1WTZ0|B1WTZ0_CYAA5 Putative uncharacterized protein OS=Cyano...    36   2.4  
tr|A7H6V2|A7H6V2_ANADF Putative uncharacterized protein OS=Anaer...    35   5.4  
tr|Q5N2C0|Q5N2C0_SYNP6 Putative uncharacterized protein OS=Synec...    34   7.1  
tr|Q31RZ2|Q31RZ2_SYNE7 Putative uncharacterized protein OS=Synec...    34   7.1  
tr|A8YXU2|A8YXU2_LACH4 Putative uncharacterized protein OS=Lacto...    34   9.2  
tr|A4T522|A4T522_MYCGI Aldehyde dehydrogenase OS=Mycobacterium g...    34   9.2  

>tr|A9SV52|A9SV52_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_188722 PE=4 SV=1
          Length = 277

 Score =  123 bits (309), Expect = 9e-27
 Identities = 76/147 (51%), Positives = 97/147 (65%), Gaps = 1/147 (0%)
 Frame = +2

Query: 224 EDEEGGPIQLP-DSGDPLSFTSEKITPLQSAASILLTGIIAVLLYRSLRRRMKLAKEMKV 400
           E+   GPI+LP +  DPL+    + +PLQ AAS++LTG+I VLL RSLRRR K AKE + 
Sbjct: 84  EEISDGPIELPPELLDPLAIP--EASPLQVAASVVLTGLITVLLIRSLRRRSKKAKETRF 141

Query: 401 RSTGLENINEAPKNASVVIEKTEKTMAKAPLTAWQTFQGAVIAGAIAFVLYRFATYVEAG 580
           RSTG E   +A K+A  ++ K  +     P +A QTF GAV+AG IA VLY+F   VE  
Sbjct: 142 RSTG-EIKEDARKSAMALLNKAPEVETPPP-SALQTFSGAVVAGFIALVLYKFTVTVEGS 199

Query: 581 FALKPVSNVYTIRQLTITVRTILNGMC 661
           F  K VS  Y+IR LTITVRTI+ G+C
Sbjct: 200 FTGKAVSMNYSIRNLTITVRTIVTGLC 226


>tr|Q8L954|Q8L954_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 266

 Score =  115 bits (289), Expect = 2e-24
 Identities = 66/154 (42%), Positives = 95/154 (61%), Gaps = 8/154 (5%)
 Frame = +2

Query: 224 EDEEGGPIQLPDSG-------DPLSFTSEKITPLQSAASILLTGIIAVLLYRSLRRRMKL 382
           E EE GPI+LP S        + +  TS+  TPLQ A S+LLTG I V L RS+RRR K 
Sbjct: 53  EVEEDGPIELPTSSTSPFSSTNSIFATSDDPTPLQLATSVLLTGAITVFLIRSVRRRAKR 112

Query: 383 AKEMKVRSTGLE-NINEAPKNASVVIEKTEKTMAKAPLTAWQTFQGAVIAGAIAFVLYRF 559
           AKE++ RSTG + ++ E   +    +  T      +  +A Q F GA+ AG IA +LY+F
Sbjct: 113 AKELQFRSTGAKKSLKEEAMDNLKALSSTPIEGGNSTPSAAQAFLGAIAAGVIALILYKF 172

Query: 560 ATYVEAGFALKPVSNVYTIRQLTITVRTILNGMC 661
              VE+G   + +S+ +++RQ+T+TVRTI+NG+C
Sbjct: 173 TVTVESGLNRQTISDNFSVRQITVTVRTIINGIC 206


>tr|Q2HIU0|Q2HIU0_ARATH At3g15110 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 266

 Score =  115 bits (287), Expect = 3e-24
 Identities = 66/154 (42%), Positives = 94/154 (61%), Gaps = 8/154 (5%)
 Frame = +2

Query: 224 EDEEGGPIQLPDSG-------DPLSFTSEKITPLQSAASILLTGIIAVLLYRSLRRRMKL 382
           E EE GPI+LP S        + +  TS+  TPLQ A S+LLTG I V L RS+RRR K 
Sbjct: 53  EVEEDGPIELPTSSTSPFSSTNSIFATSDDPTPLQLATSVLLTGAITVFLIRSVRRRAKR 112

Query: 383 AKEMKVRSTGLE-NINEAPKNASVVIEKTEKTMAKAPLTAWQTFQGAVIAGAIAFVLYRF 559
           AKE+  RSTG + ++ E   +    +  T      +  +A Q F GA+ AG IA +LY+F
Sbjct: 113 AKELTFRSTGAKKSLKEEAMDNLKALSSTPIEGGNSTPSAAQAFLGAIAAGVIALILYKF 172

Query: 560 ATYVEAGFALKPVSNVYTIRQLTITVRTILNGMC 661
              VE+G   + +S+ +++RQ+T+TVRTI+NG+C
Sbjct: 173 TVTVESGLNRQTISDNFSVRQITVTVRTIINGIC 206


>tr|A9PIQ9|A9PIQ9_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 238

 Score =  114 bits (285), Expect = 5e-24
 Identities = 62/146 (42%), Positives = 92/146 (63%)
 Frame = +2

Query: 224 EDEEGGPIQLPDSGDPLSFTSEKITPLQSAASILLTGIIAVLLYRSLRRRMKLAKEMKVR 403
           E EE GPI++  S   +  TS+  + +Q A S+LLTG I+V L+RSLRRR K +KE+K R
Sbjct: 68  EPEEEGPIEILRSSPSIFATSDDPSSIQVATSVLLTGAISVFLFRSLRRRAKRSKELKFR 127

Query: 404 STGLENINEAPKNASVVIEKTEKTMAKAPLTAWQTFQGAVIAGAIAFVLYRFATYVEAGF 583
           S+G +   +     S+    +     K P +  Q F GA+ AG IA +LY+F T +EA  
Sbjct: 128 SSGAKKTLKEEALDSLKTFGSAPIDVKKPPSPVQAFLGAISAGVIALILYKFTTTIEASL 187

Query: 584 ALKPVSNVYTIRQLTITVRTILNGMC 661
             + VS+ +++RQ+T+TVRTI+NG+C
Sbjct: 188 NRQTVSDNFSVRQITVTVRTIVNGLC 213


>tr|A7P1U3|A7P1U3_VITVI Chromosome chr19 scaffold_4, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00027754001
           PE=4 SV=1
          Length = 277

 Score =  114 bits (285), Expect = 5e-24
 Identities = 61/143 (42%), Positives = 92/143 (64%)
 Frame = +2

Query: 233 EGGPIQLPDSGDPLSFTSEKITPLQSAASILLTGIIAVLLYRSLRRRMKLAKEMKVRSTG 412
           E GPI+LP S   +  T++  TPLQ A S+LLTG I+V L+RS+RRR+K AKE++ RS+G
Sbjct: 64  EEGPIELPPSSSSIFATNDDPTPLQVATSVLLTGAISVFLFRSIRRRVKRAKELRFRSSG 123

Query: 413 LENINEAPKNASVVIEKTEKTMAKAPLTAWQTFQGAVIAGAIAFVLYRFATYVEAGFALK 592
           ++   +     S+    +    A AP +  Q   G + AG IA +LY+F   +EA    +
Sbjct: 124 VKKTLKEEALDSLKAMGSGSVKA-APPSPVQALLGGITAGVIALILYKFTITIEASLNRQ 182

Query: 593 PVSNVYTIRQLTITVRTILNGMC 661
            VS+ +++RQ+TIT+RTI+NG+C
Sbjct: 183 TVSDNFSVRQITITIRTIINGLC 205


>tr|Q6Z0W7|Q6Z0W7_ORYSJ Os02g0307800 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0026D20.9 PE=2 SV=1
          Length = 273

 Score =  111 bits (278), Expect = 3e-23
 Identities = 63/150 (42%), Positives = 94/150 (62%), Gaps = 4/150 (2%)
 Frame = +2

Query: 224 EDEEG-GPIQLPDSGDPLSFT-SEKITPLQSAASILLTGIIAVLLYRSLRRRMKLAKEMK 397
           +D EG GP++L     P  F+  E  TPLQ+A S+LLTG I+V L+RS+RRR++ AKE++
Sbjct: 58  DDGEGDGPVELRT---PTLFSIDENPTPLQTATSVLLTGAISVFLFRSIRRRVRRAKELR 114

Query: 398 VRSTGLENINEAPKNA--SVVIEKTEKTMAKAPLTAWQTFQGAVIAGAIAFVLYRFATYV 571
           VRS G+E  N   K A   + +          P +  Q   G + AG IA +LY+F T +
Sbjct: 115 VRSGGVEKPNNLSKEALEGLRLVSASPIEVDKPPSPVQALLGGIAAGVIALILYKFTTTI 174

Query: 572 EAGFALKPVSNVYTIRQLTITVRTILNGMC 661
           EA    + +S+ +++RQ+TIT+RTI+NG+C
Sbjct: 175 EAALNRQTISDSFSVRQITITIRTIINGIC 204


>tr|B6T671|B6T671_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 285

 Score =  110 bits (275), Expect = 8e-23
 Identities = 66/154 (42%), Positives = 97/154 (62%), Gaps = 7/154 (4%)
 Frame = +2

Query: 221 VEDEEGGPIQLPDSGDPLSFTSEKITPLQSAASILLTGIIAVLLYRSLRRRMKLAKEMKV 400
           VE E  GP++L      L  T +  TPLQ+A S+LLTG I+V L+R+LRRR + AKE++V
Sbjct: 63  VEAEGQGPVEL--RAPTLFSTDDNPTPLQTATSLLLTGAISVFLFRALRRRARRAKELRV 120

Query: 401 RSTGLENINEAPKNA-------SVVIEKTEKTMAKAPLTAWQTFQGAVIAGAIAFVLYRF 559
           RS+GL+  N   + A       S    +TEK  A +P+   Q   G + AG IA +LY+F
Sbjct: 121 RSSGLKKPNNLTEEALERLRLMSASPIETEK--ATSPI---QALLGGIAAGVIALILYKF 175

Query: 560 ATYVEAGFALKPVSNVYTIRQLTITVRTILNGMC 661
           +T VEA    + +S+ +++RQ+TIT+RTI+ G+C
Sbjct: 176 STTVEAALNRQTISDSFSVRQITITIRTIVTGLC 209


>tr|B7FJ85|B7FJ85_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 271

 Score =  110 bits (274), Expect = 1e-22
 Identities = 60/141 (42%), Positives = 91/141 (64%), Gaps = 1/141 (0%)
 Frame = +2

Query: 239 GPIQLP-DSGDPLSFTSEKITPLQSAASILLTGIIAVLLYRSLRRRMKLAKEMKVRSTGL 415
           GPI++P DS   L  +++  + +Q AAS+LLTG I+VLL+RS RRR K  K+ + RS+G 
Sbjct: 58  GPIEIPYDSTPSLLSSTDDPSFIQIAASLLLTGAISVLLFRSFRRRAKRLKQTQFRSSGE 117

Query: 416 ENINEAPKNASVVIEKTEKTMAKAPLTAWQTFQGAVIAGAIAFVLYRFATYVEAGFALKP 595
           +++ E                 K P +  QTF GA+ AG I+ +LY+FAT +EAG + + 
Sbjct: 118 KSVKEEALETLKATGTASIETTKGPPSPVQTFLGAISAGVISLILYKFATIIEAGLSRQT 177

Query: 596 VSNVYTIRQLTITVRTILNGM 658
           +S+ ++ RQ+TITVRTI+NG+
Sbjct: 178 ISDDFSARQITITVRTIINGL 198


>tr|B8AG73|B8AG73_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06901 PE=4 SV=1
          Length = 325

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 62/180 (34%), Positives = 92/180 (51%), Gaps = 34/180 (18%)
 Frame = +2

Query: 224 EDEEG-GPIQLPDSGDPLSFT-SEKITPLQSAASILLTGIIAVLLYRSLRRRMKLAKEMK 397
           +D EG GP++L     P  F+  E  TPLQ+A S+LLTG I+V L+RS+RRR + AKE+ 
Sbjct: 80  DDGEGDGPVELRT---PTLFSIDENPTPLQTATSVLLTGAISVFLFRSIRRRARRAKELV 136

Query: 398 V------------------------------RSTGLENINEAPKNA--SVVIEKTEKTMA 481
           +                              RS G+E  N   K A   + +        
Sbjct: 137 IPSLLIHLRCAFSTGEHTWSTNPISFRDTEGRSGGVEKPNNLSKEALEGLRLVSASPIEV 196

Query: 482 KAPLTAWQTFQGAVIAGAIAFVLYRFATYVEAGFALKPVSNVYTIRQLTITVRTILNGMC 661
             P +  Q   G + AG IA +LY+F T +EA    + +S+ +++RQ+TIT+RTI+NG+C
Sbjct: 197 DKPPSPVQALLGGIAAGVIALILYKFTTTIEAALNRQTISDSFSVRQITITIRTIINGIC 256


>tr|A4RWZ1|A4RWZ1_OSTLU Predicted protein (Fragment) OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_92691 PE=4 SV=1
          Length = 181

 Score = 68.9 bits (167), Expect = 3e-10
 Identities = 44/131 (33%), Positives = 68/131 (51%)
 Frame = +2

Query: 266 DPLSFTSEKITPLQSAASILLTGIIAVLLYRSLRRRMKLAKEMKVRSTGLENINEAPKNA 445
           D     +E+ TPLQ+   +L TG       R++++R   A+E +V        N  P+  
Sbjct: 3   DSYGVPTEEATPLQNVFGVLFTGFSFWYFARAVQKRSGKAREFRVA-------NRLPEEE 55

Query: 446 SVVIEKTEKTMAKAPLTAWQTFQGAVIAGAIAFVLYRFATYVEAGFALKPVSNVYTIRQL 625
              I++ E+      LTA Q+F G +    I+ VLY FA+ V A F  K +    T+RQ+
Sbjct: 56  RAKIDE-ERAKKTKELTAMQSFTGGLTGIGISVVLYAFASKVSASFDGKALPESETVRQI 114

Query: 626 TITVRTILNGM 658
           +ITVRTI+ G+
Sbjct: 115 SITVRTIVEGL 125