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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960380
Clone id TST39A01NGRL0007_E05
Library
Length 613
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_E05. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GTCAAAGGGGGGTTAGTCTCCAAAAAAAACAAAGAAGCCATAGTGGGCACGCAAGGGGGT
CTCACGTTGGAGGGCGTATAAGGAGAGCTTGAGCGAGCTGCAGAGAGTGAGAGCTCATCA
CGGGCTGTAAGTGCAAAGGGAGCGGGGAGGAGTTGGTAAGCAAGAGTTGGCTCTAAGAGC
GTTCCAAGAGAAGGTAGTAGCAGAGATAAGGGAAGACGAGTTGCAGAGTCTTGACCATCA
CACGGGCGAAGTGGCTCGTTTTATTAAAAGGAGAAGGGGGAATTCCAATGGACAAGCATC
AAGGGCCTGTCAAACTGTAGAGAGCATGTGGGACTGGGGATGCTCTGGGAGTGAAGCAAA
AGAGAAGCCCTCTAGTGGAGATCAAGGAAACTCAAGAGCACCTGTAGAAGGCGTCGACTA
GCTGGAGCAGCTCACTAGCTGGAGCAGCTCACGGGGAAGAGTCAACAACAGAAGAAGCGA
GCTGCAGGGATCAGGTCACTACAGACTCAGATAAAAGGATGCCTTTCAGAGAGGGATATG
GCACTGAAGTTAAGGGGCCTACTTCAAATTGAGGCCCAATTCCAAAGGGGGACCACTCAC
AGAAGCTCGTGGA
■■Homology search results ■■ -
sp_hit_id Q90469
Definition sp|Q90469|HXDAA_DANRE Homeobox protein Hox-D10a OS=Danio rerio
Align length 72
Score (bit) 33.9
E-value 0.67
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960380|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_E05, 5'
         (613 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q90469|HXDAA_DANRE Homeobox protein Hox-D10a OS=Danio rerio G...    34   0.67 
sp|A2RSJ4|UH1BL_MOUSE UHRF1-binding protein 1-like OS=Mus muscul...    33   1.2  
sp|A1A5D9|CC64B_HUMAN Coiled-coil domain-containing protein 64B ...    33   1.2  
sp|Q80TN7|NAV3_MOUSE Neuron navigator 3 OS=Mus musculus GN=Nav3 ...    31   5.7  
sp|Q8IVL0|NAV3_HUMAN Neuron navigator 3 OS=Homo sapiens GN=NAV3 ...    31   5.7  
sp|P10220|TEGU_HHV11 Large tegument protein OS=Human herpesvirus...    30   9.7  
sp|P54697|MYOJ_DICDI Myosin IJ heavy chain OS=Dictyostelium disc...    30   9.8  
sp|Q864F6|MSHR_EULFU Melanocyte-stimulating hormone receptor OS=...    30   9.8  
sp|Q831N0|GCP_ENTFA Probable O-sialoglycoprotein endopeptidase O...    30   9.8  

>sp|Q90469|HXDAA_DANRE Homeobox protein Hox-D10a OS=Danio rerio
           GN=hoxd10a PE=2 SV=3
          Length = 343

 Score = 33.9 bits (76), Expect = 0.67
 Identities = 23/72 (31%), Positives = 38/72 (52%)
 Frame = +3

Query: 354 KQKRSPLVEIKETQEHL*KASTSWSSSLAGAAHGEESTTEEASCRDQVTTDSDKRMPFRE 533
           K + +P VE+++   H      + SSS A +   + ST EE +C  + +  S + +P RE
Sbjct: 184 KAQSTPFVEVEKKLAH---DRDTRSSSPAQSPEPKVSTLEEKNCSTEASVSSPE-LPHRE 239

Query: 534 GYGTEVKGPTSN 569
           G  ++   PTSN
Sbjct: 240 GKESKNDTPTSN 251


>sp|A2RSJ4|UH1BL_MOUSE UHRF1-binding protein 1-like OS=Mus musculus
            GN=Uhrf1bp1l PE=2 SV=1
          Length = 1457

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +3

Query: 390  TQEHL*KASTSWSSSLAGAAHGEESTTEEASCRDQVTTDSDKRMPFREG 536
            + +HL K S   SS L+  +   E T+E +  +D  +TDSD  + +R+G
Sbjct: 967  SDKHLGKISEDESSGLSHKSGSGEMTSEGSHTKDVASTDSDSVLNYRDG 1015


>sp|A1A5D9|CC64B_HUMAN Coiled-coil domain-containing protein 64B
           OS=Homo sapiens GN=CCDC64B PE=2 SV=1
          Length = 508

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = +2

Query: 53  KGVSRWRAYKESLSELQRVRAHHGL*VQRERGGVGKQELALRAFQEKVVAEIREDELQSL 232
           KG  R +   E L  L+R R  H L ++R R   G+   ALR  + +V     E  LQ  
Sbjct: 229 KGEGRLQTTHEELLLLRRERREHSLELERARSEAGEALSALRRLRRRVSELEEESRLQDA 288

Query: 233 D 235
           D
Sbjct: 289 D 289


>sp|Q80TN7|NAV3_MOUSE Neuron navigator 3 OS=Mus musculus GN=Nav3 PE=1
            SV=2
          Length = 2359

 Score = 30.8 bits (68), Expect = 5.7
 Identities = 15/52 (28%), Positives = 32/52 (61%)
 Frame = +3

Query: 354  KQKRSPLVEIKETQEHL*KASTSWSSSLAGAAHGEESTTEEASCRDQVTTDS 509
            +QK S L+E++ET E L   +++  +++ GA +G +   ++   R Q +++S
Sbjct: 1624 EQKESELIELRETIEMLKAQNSAAQAAIQGALNGPDHPPKDLRIRRQHSSES 1675


>sp|Q8IVL0|NAV3_HUMAN Neuron navigator 3 OS=Homo sapiens GN=NAV3 PE=1
            SV=2
          Length = 2385

 Score = 30.8 bits (68), Expect = 5.7
 Identities = 15/52 (28%), Positives = 32/52 (61%)
 Frame = +3

Query: 354  KQKRSPLVEIKETQEHL*KASTSWSSSLAGAAHGEESTTEEASCRDQVTTDS 509
            +QK S L+E++ET E L   +++  +++ GA +G +   ++   R Q +++S
Sbjct: 1621 EQKESELIELRETIEMLKAQNSAAQAAIQGALNGPDHPPKDLRIRRQHSSES 1672


>sp|P10220|TEGU_HHV11 Large tegument protein OS=Human herpesvirus 1
            (strain 17) GN=UL36 PE=1 SV=1
          Length = 3164

 Score = 30.0 bits (66), Expect = 9.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 113  LSLSAARSSSPYTPSNVRPPCVPTMASL 30
            L+L  A + +PYTP N R P +P +A++
Sbjct: 1415 LALETALAFNPYTPENQRHPMLPPLAAI 1442


>sp|P54697|MYOJ_DICDI Myosin IJ heavy chain OS=Dictyostelium
            discoideum GN=myoJ PE=4 SV=2
          Length = 2245

 Score = 30.0 bits (66), Expect = 9.8
 Identities = 13/29 (44%), Positives = 24/29 (82%)
 Frame = +1

Query: 499  LQTQIKGCLSERDMALKLRGLLQIEAQFQ 585
            LQT+I+  LS+R++  KLRG++ I+A+++
Sbjct: 927  LQTKIRQILSKREVDKKLRGIILIQARWR 955


>sp|Q864F6|MSHR_EULFU Melanocyte-stimulating hormone receptor
           OS=Eulemur fulvus fulvus GN=MC1R PE=3 SV=1
          Length = 317

 Score = 30.0 bits (66), Expect = 9.8
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 379 STRGLLFC--FTPRASPVPHALYSLTGP*CLSIGIPPSPF 266
           S RGLL    FTP A+P      + TGP CL + +P   F
Sbjct: 6   SQRGLLGAVNFTPTATPHLRPAANQTGPQCLEVSVPDGLF 45


>sp|Q831N0|GCP_ENTFA Probable O-sialoglycoprotein endopeptidase
           OS=Enterococcus faecalis GN=gcp PE=3 SV=1
          Length = 348

 Score = 30.0 bits (66), Expect = 9.8
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 402 GALEFP*SPLEGFSFA-SLPEHPQSHMLSTV*QALDACPLEFPLLLLI 262
           GAL    S  + F++A  LP  P +HM   +  A    PLEFPL+ L+
Sbjct: 94  GALLIGLSAAKAFAWAHQLPLIPVNHMAGHIYAARFVAPLEFPLMALL 141
tr_hit_id Q3JRN2
Definition tr|Q3JRN2|Q3JRN2_BURP1 Putative uncharacterized protein OS=Burkholderia pseudomallei (strain 1710b)
Align length 81
Score (bit) 40.4
E-value 0.083
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960380|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_E05, 5'
         (613 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3JRN2|Q3JRN2_BURP1 Putative uncharacterized protein OS=Burkh...    40   0.083
tr|A8JIF3|A8JIF3_CHLRE Predicted protein (Fragment) OS=Chlamydom...    38   0.54 
tr|Q5Y0R6|Q5Y0R6_9ALPH Very large tegument protein OS=Cercopithe...    34   5.8  
tr|A8E5N6|A8E5N6_DANRE Homeo box D10a OS=Danio rerio GN=hoxd10a ...    34   7.6  
tr|Q6N6Y4|Q6N6Y4_RHOPA Methyl-accepting chemotaxis receptor/sens...    34   7.7  
tr|B3QH77|B3QH77_RHOPT Methyl-accepting chemotaxis sensory trans...    34   7.7  
tr|Q4DA17|Q4DA17_TRYCR Mucin-associated surface protein (MASP), ...    34   7.7  

>tr|Q3JRN2|Q3JRN2_BURP1 Putative uncharacterized protein
           OS=Burkholderia pseudomallei (strain 1710b)
           GN=BURPS1710b_2376 PE=4 SV=1
          Length = 453

 Score = 40.4 bits (93), Expect = 0.083
 Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
 Frame = +2

Query: 71  RAYKESLSELQRVR---AHHGL*VQRERGGVGKQELALRAFQEKVVAEIREDELQSLDHH 241
           R  +E+L  LQRVR   A   L  +R+ G VG +E   R  Q+  V    ++ L  LDHH
Sbjct: 153 RRAEEALRALQRVRVDAARQHLAGRRDHGVVGARETRDRVEQDHDVVLHLDEALGLLDHH 212

Query: 242 TGEV----ARFIKRRRGNSNG 292
            G++     RF++RRR +  G
Sbjct: 213 FGDLHVARGRFVERRRDHFAG 233


>tr|A8JIF3|A8JIF3_CHLRE Predicted protein (Fragment)
           OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_154897 PE=4
           SV=1
          Length = 188

 Score = 37.7 bits (86), Expect = 0.54
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
 Frame = +2

Query: 191 KVVAEIREDELQSLDHHTGEVARFIKRRRGNSNGQASRACQTVESMWDWGCSGSEAKEK- 367
           K  A I+ ++L+   + +G    ++K              +T E  W+WG SG EAKEK 
Sbjct: 46  KKKAAIKLEDLERAGYKSGPSVLYVKP-----------PAETGEQNWNWG-SGREAKEKG 93

Query: 368 -PSSGDQGNSRAPVEGVD 418
             S  D+G +RA V+GV+
Sbjct: 94  EDSDEDRGATRAAVQGVE 111


>tr|Q5Y0R6|Q5Y0R6_9ALPH Very large tegument protein OS=Cercopithecine
            herpesvirus 2 GN=UL36 PE=4 SV=1
          Length = 3070

 Score = 34.3 bits (77), Expect = 5.8
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = -3

Query: 134  ALTARDE---LSLSAARSSSPYTPSNVRPPCVPTMASLFFLETNP 9
            AL A  E   L+L AA + +PYTP N R P +P +A++  L+  P
Sbjct: 1375 ALAANAETATLALEAAFAFNPYTPENQRHPALPPLAAVHRLDWGP 1419


>tr|A8E5N6|A8E5N6_DANRE Homeo box D10a OS=Danio rerio GN=hoxd10a
           PE=2 SV=1
          Length = 332

 Score = 33.9 bits (76), Expect = 7.6
 Identities = 23/72 (31%), Positives = 38/72 (52%)
 Frame = +3

Query: 354 KQKRSPLVEIKETQEHL*KASTSWSSSLAGAAHGEESTTEEASCRDQVTTDSDKRMPFRE 533
           K + +P VE+++   H      + SSS A +   + ST EE +C  + +  S + +P RE
Sbjct: 184 KAQSTPFVEVEKKLAH---DRDTRSSSPAQSPEPKVSTLEEKNCSTEASVSSPE-LPHRE 239

Query: 534 GYGTEVKGPTSN 569
           G  ++   PTSN
Sbjct: 240 GKESKNDTPTSN 251


>tr|Q6N6Y4|Q6N6Y4_RHOPA Methyl-accepting chemotaxis receptor/sensory
           transducer OS=Rhodopseudomonas palustris GN=RPA2479 PE=4
           SV=1
          Length = 579

 Score = 33.9 bits (76), Expect = 7.7
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
 Frame = +2

Query: 158 KQELALRAFQEKVVAEIREDELQSLDHH----TGEVARFIKRRRGNSNGQASRACQTVES 325
           +QE A +A Q++++A  R+ E++ L HH     GEV R +          A+    + + 
Sbjct: 281 RQEAAGKAEQDRIIAVQRKQEMEKLAHHFEAAVGEVIRAVSSASTELEASATTLTSSAQR 340

Query: 326 MWDWGCSGSEAKEKPSSGDQGNSRAPVE 409
             +   S + A E+ S+  Q  + A  E
Sbjct: 341 AQEVTTSVAAASEQASANVQSVASATEE 368


>tr|B3QH77|B3QH77_RHOPT Methyl-accepting chemotaxis sensory
           transducer OS=Rhodopseudomonas palustris (strain TIE-1)
           GN=Rpal_2757 PE=3 SV=1
          Length = 561

 Score = 33.9 bits (76), Expect = 7.7
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
 Frame = +2

Query: 158 KQELALRAFQEKVVAEIREDELQSLDHH----TGEVARFIKRRRGNSNGQASRACQTVES 325
           +QE A +A Q++++A  R+ E++ L HH     GEV R +          A+    + + 
Sbjct: 263 RQEAAGKAEQDRIIAVQRKQEMEKLAHHFEAAVGEVIRAVSSASTELEASATTLTSSAQR 322

Query: 326 MWDWGCSGSEAKEKPSSGDQGNSRAPVE 409
             +   S + A E+ S+  Q  + A  E
Sbjct: 323 AQEVTTSVAAASEQASANVQSVASATEE 350


>tr|Q4DA17|Q4DA17_TRYCR Mucin-associated surface protein (MASP),
           putative OS=Trypanosoma cruzi GN=Tc00.1047053510213.70
           PE=4 SV=1
          Length = 411

 Score = 33.9 bits (76), Expect = 7.7
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
 Frame = +2

Query: 146 GGVGKQELALRAFQEKVVAEIREDELQSLDHHTGEVARFIKRRRGN-SNGQASRACQTVE 322
           GGVG Q  A+         E +  EL  +D + G+VA   +++ GN ++ Q     Q   
Sbjct: 112 GGVGGQPAAVTPKPGGSDTEEQVGELGVMDTNNGKVAGDEEQKDGNEADSQQQSVDQLTS 171

Query: 323 SMWDWGCSGSEAKEKPSSGDQGNSRAPVE 409
           S    G SG+E  ++PSS     S+  ++
Sbjct: 172 SSSSSGSSGTEGVKQPSSRANSKSKETLD 200